Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03801

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03799 and MPMX19_03800 are separated by 13 nucleotidesMPMX19_03800 and MPMX19_03801 are separated by 9 nucleotidesMPMX19_03801 and MPMX19_03802 are separated by 10 nucleotidesMPMX19_03802 and MPMX19_03803 overlap by 4 nucleotidesMPMX19_03803 and MPMX19_03804 overlap by 4 nucleotides MPMX19_03799: MPMX19_03799 - hypothetical protein, at 34,727 to 35,869 _03799 MPMX19_03800: MPMX19_03800 - hypothetical protein, at 35,883 to 36,302 _03800 MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238 _03801 MPMX19_03802: MPMX19_03802 - hypothetical protein, at 37,249 to 37,623 _03802 MPMX19_03803: MPMX19_03803 - hypothetical protein, at 37,620 to 38,057 _03803 MPMX19_03804: MPMX19_03804 - hypothetical protein, at 38,054 to 38,587 _03804 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.759 kb on + strandat 35.759 kb on + strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.834 kb on + strandat 35.835 kb on - strandat 35.896 kb on + strandat 35.897 kb on - strandat 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.301 kb on - strandat 36.301 kb on - strandat 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.531 kb on + strand, within MPMX19_03801at 36.532 kb on - strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.718 kb on - strand, within MPMX19_03801at 36.718 kb on - strand, within MPMX19_03801at 36.825 kb on - strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.912 kb on + strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.913 kb on - strand, within MPMX19_03801at 36.993 kb on + strand, within MPMX19_03801at 36.993 kb on + strand, within MPMX19_03801at 36.994 kb on - strand, within MPMX19_03801at 36.994 kb on - strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.021 kb on + strand, within MPMX19_03801at 37.022 kb on - strand, within MPMX19_03801at 37.022 kb on - strand, within MPMX19_03801at 37.022 kb on - strand, within MPMX19_03801at 37.022 kb on - strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.047 kb on + strand, within MPMX19_03801at 37.048 kb on - strand, within MPMX19_03801at 37.048 kb on - strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.087 kb on - strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.137 kb on + strand, within MPMX19_03801at 37.137 kb on + strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.164 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.771 kb on - strand, within MPMX19_03803at 37.771 kb on - strand, within MPMX19_03803at 37.857 kb on + strand, within MPMX19_03803at 37.857 kb on + strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.900 kb on - strand, within MPMX19_03803at 37.900 kb on - strand, within MPMX19_03803at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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35,389 + MPMX19_03799 0.58 +1.1
35,389 + MPMX19_03799 0.58 -1.1
35,389 + MPMX19_03799 0.58 -1.9
35,389 + MPMX19_03799 0.58 -2.1
35,389 + MPMX19_03799 0.58 -1.9
35,389 + MPMX19_03799 0.58 -0.9
35,389 + MPMX19_03799 0.58 -1.4
35,389 + MPMX19_03799 0.58 +0.0
35,389 + MPMX19_03799 0.58 -0.9
35,389 + MPMX19_03799 0.58 +1.0
35,389 + MPMX19_03799 0.58 -1.5
35,389 + MPMX19_03799 0.58 -0.5
35,389 + MPMX19_03799 0.58 -0.6
35,389 + MPMX19_03799 0.58 +0.5
35,389 + MPMX19_03799 0.58 -1.5
35,390 - MPMX19_03799 0.58 -0.1
35,390 - MPMX19_03799 0.58 -1.0
35,390 - MPMX19_03799 0.58 -0.5
35,390 - MPMX19_03799 0.58 -0.1
35,390 - MPMX19_03799 0.58 -0.1
35,390 - MPMX19_03799 0.58 +0.5
35,390 - MPMX19_03799 0.58 -0.5
35,390 - MPMX19_03799 0.58 -0.9
35,390 - MPMX19_03799 0.58 -1.4
35,390 - MPMX19_03799 0.58 +0.5
35,390 - MPMX19_03799 0.58 -0.1
35,390 - MPMX19_03799 0.58 +0.6
35,390 - MPMX19_03799 0.58 -0.9
35,390 - MPMX19_03799 0.58 -0.5
35,390 - MPMX19_03799 0.58 -0.7
35,390 - MPMX19_03799 0.58 -0.2
35,759 + -0.5
35,759 + -0.1
35,760 - +0.6
35,760 - -0.9
35,760 - -1.4
35,760 - -0.1
35,760 - +1.6
35,834 + +1.5
35,835 - -0.9
35,896 + -1.3
35,897 - +1.5
36,012 + MPMX19_03800 0.31 -0.5
36,012 + MPMX19_03800 0.31 -1.5
36,012 + MPMX19_03800 0.31 +0.9
36,012 + MPMX19_03800 0.31 -1.2
36,012 + MPMX19_03800 0.31 +1.5
36,301 - +1.0
36,301 - -1.5
36,480 + MPMX19_03801 0.18 -1.5
36,480 + MPMX19_03801 0.18 +0.5
36,480 + MPMX19_03801 0.18 -0.4
36,480 + MPMX19_03801 0.18 -0.7
36,480 + MPMX19_03801 0.18 -0.1
36,480 + MPMX19_03801 0.18 -0.1
36,480 + MPMX19_03801 0.18 -1.9
36,481 - MPMX19_03801 0.18 -1.4
36,481 - MPMX19_03801 0.18 -0.5
36,481 - MPMX19_03801 0.18 +0.9
36,481 - MPMX19_03801 0.18 -1.1
36,481 - MPMX19_03801 0.18 -0.1
36,481 - MPMX19_03801 0.18 +0.1
36,481 - MPMX19_03801 0.18 -0.1
36,481 - MPMX19_03801 0.18 -1.4
36,531 + MPMX19_03801 0.24 -0.5
36,532 - MPMX19_03801 0.24 -1.0
36,681 + MPMX19_03801 0.40 -1.7
36,681 + MPMX19_03801 0.40 -2.5
36,681 + MPMX19_03801 0.40 -0.7
36,717 + MPMX19_03801 0.44 -1.4
36,717 + MPMX19_03801 0.44 -0.9
36,717 + MPMX19_03801 0.44 +1.5
36,717 + MPMX19_03801 0.44 -0.5
36,718 - MPMX19_03801 0.44 -0.4
36,718 - MPMX19_03801 0.44 +1.0
36,825 - MPMX19_03801 0.55 -1.0
36,912 + MPMX19_03801 0.65 -0.7
36,912 + MPMX19_03801 0.65 -0.4
36,912 + MPMX19_03801 0.65 -1.4
36,912 + MPMX19_03801 0.65 -0.9
36,912 + MPMX19_03801 0.65 +0.5
36,912 + MPMX19_03801 0.65 -0.5
36,912 + MPMX19_03801 0.65 -0.9
36,912 + MPMX19_03801 0.65 +0.5
36,913 - MPMX19_03801 0.65 -0.4
36,913 - MPMX19_03801 0.65 -0.9
36,913 - MPMX19_03801 0.65 -0.9
36,913 - MPMX19_03801 0.65 -1.7
36,913 - MPMX19_03801 0.65 -0.5
36,913 - MPMX19_03801 0.65 +0.1
36,913 - MPMX19_03801 0.65 -0.4
36,913 - MPMX19_03801 0.65 -1.1
36,993 + MPMX19_03801 0.73 -0.9
36,993 + MPMX19_03801 0.73 -0.1
36,994 - MPMX19_03801 0.74 -0.5
36,994 - MPMX19_03801 0.74 -0.5
37,021 + MPMX19_03801 0.76 -0.1
37,021 + MPMX19_03801 0.76 -0.9
37,021 + MPMX19_03801 0.76 -0.1
37,021 + MPMX19_03801 0.76 -0.4
37,021 + MPMX19_03801 0.76 -0.1
37,021 + MPMX19_03801 0.76 +0.1
37,021 + MPMX19_03801 0.76 +0.1
37,021 + MPMX19_03801 0.76 +0.5
37,022 - MPMX19_03801 0.77 -0.3
37,022 - MPMX19_03801 0.77 -1.5
37,022 - MPMX19_03801 0.77 -0.3
37,022 - MPMX19_03801 0.77 +0.0
37,047 + MPMX19_03801 0.79 +0.1
37,047 + MPMX19_03801 0.79 -0.1
37,047 + MPMX19_03801 0.79 -0.9
37,047 + MPMX19_03801 0.79 +1.5
37,047 + MPMX19_03801 0.79 -0.1
37,047 + MPMX19_03801 0.79 +0.5
37,048 - MPMX19_03801 0.79 -0.9
37,048 - MPMX19_03801 0.79 -1.0
37,086 + MPMX19_03801 0.83 -1.4
37,086 + MPMX19_03801 0.83 -1.7
37,086 + MPMX19_03801 0.83 +1.8
37,086 + MPMX19_03801 0.83 +1.5
37,086 + MPMX19_03801 0.83 +0.5
37,086 + MPMX19_03801 0.83 -0.9
37,087 - MPMX19_03801 0.84 -1.3
37,092 + MPMX19_03801 0.84 +0.5
37,092 + MPMX19_03801 0.84 -0.5
37,092 + MPMX19_03801 0.84 +1.0
37,093 - MPMX19_03801 0.84 -0.9
37,093 - MPMX19_03801 0.84 -0.1
37,093 - MPMX19_03801 0.84 -0.5
37,093 - MPMX19_03801 0.84 +0.2
37,093 - MPMX19_03801 0.84 -0.9
37,093 - MPMX19_03801 0.84 -0.8
37,098 + MPMX19_03801 0.85 -0.5
37,098 + MPMX19_03801 0.85 +0.1
37,098 + MPMX19_03801 0.85 +0.5
37,098 + MPMX19_03801 0.85 -1.4
37,098 + MPMX19_03801 0.85 -0.9
37,098 + MPMX19_03801 0.85 +0.5
37,098 + MPMX19_03801 0.85 -0.3
37,098 + MPMX19_03801 0.85 -0.7
37,098 + MPMX19_03801 0.85 -0.9
37,098 + MPMX19_03801 0.85 +0.0
37,098 + MPMX19_03801 0.85 -1.2
37,098 + MPMX19_03801 0.85 -0.5
37,099 - MPMX19_03801 0.85 -0.4
37,099 - MPMX19_03801 0.85 -1.1
37,099 - MPMX19_03801 0.85 -0.5
37,099 - MPMX19_03801 0.85 -1.0
37,099 - MPMX19_03801 0.85 -1.3
37,099 - MPMX19_03801 0.85 -0.1
37,099 - MPMX19_03801 0.85 -1.1
37,099 - MPMX19_03801 0.85 +0.5
37,134 + MPMX19_03801 0.89 -0.1
37,134 + MPMX19_03801 0.89 -1.4
37,134 + MPMX19_03801 0.89 -1.5
37,134 + MPMX19_03801 0.89 +0.5
37,134 + MPMX19_03801 0.89 +1.0
37,134 + MPMX19_03801 0.89 -0.6
37,134 + MPMX19_03801 0.89 -1.4
37,135 - MPMX19_03801 0.89 -0.1
37,135 - MPMX19_03801 0.89 -0.5
37,135 - MPMX19_03801 0.89 +0.6
37,135 - MPMX19_03801 0.89 +0.7
37,135 - MPMX19_03801 0.89 +0.5
37,135 - MPMX19_03801 0.89 -0.1
37,135 - MPMX19_03801 0.89 -2.6
37,135 - MPMX19_03801 0.89 -1.9
37,137 + MPMX19_03801 0.89 -1.1
37,137 + MPMX19_03801 0.89 +0.7
37,138 - MPMX19_03801 0.89 -0.7
37,138 - MPMX19_03801 0.89 -0.4
37,138 - MPMX19_03801 0.89 -0.2
37,138 - MPMX19_03801 0.89 +0.5
37,138 - MPMX19_03801 0.89 +1.5
37,138 - MPMX19_03801 0.89 +0.6
37,138 - MPMX19_03801 0.89 -1.1
37,138 - MPMX19_03801 0.89 +0.2
37,138 - MPMX19_03801 0.89 -0.9
37,164 + +0.5
37,236 + -2.0
37,236 + +1.2
37,236 + -1.6
37,236 + -0.5
37,236 + +0.1
37,236 + -2.1
37,237 - +0.2
37,237 - -0.9
37,237 - -0.9
37,237 - -1.4
37,237 - -0.1
37,237 - -0.4
37,237 - -0.5
37,626 + -2.4
37,626 + -0.9
37,626 + -1.0
37,626 + +0.2
37,627 - -1.5
37,627 - -0.5
37,627 - -0.7
37,627 - -0.0
37,627 - +1.9
37,627 - +0.7
37,627 - -0.1
37,627 - -0.5
37,627 - -0.0
37,627 - +0.5
37,771 - MPMX19_03803 0.34 -0.5
37,771 - MPMX19_03803 0.34 +0.5
37,857 + MPMX19_03803 0.54 -0.1
37,857 + MPMX19_03803 0.54 -0.1
37,858 - MPMX19_03803 0.54 +1.0
37,858 - MPMX19_03803 0.54 -0.5
37,858 - MPMX19_03803 0.54 -0.5
37,900 - MPMX19_03803 0.64 +0.5
37,900 - MPMX19_03803 0.64 -0.9
38,163 + MPMX19_03804 0.20 +1.5
38,163 + MPMX19_03804 0.20 -1.6
38,163 + MPMX19_03804 0.20 -1.4
38,163 + MPMX19_03804 0.20 -0.1
38,164 - MPMX19_03804 0.21 -1.1
38,164 - MPMX19_03804 0.21 +0.5
38,164 - MPMX19_03804 0.21 +0.9
38,164 - MPMX19_03804 0.21 -1.1
38,164 - MPMX19_03804 0.21 -0.5
38,164 - MPMX19_03804 0.21 -0.1
38,164 - MPMX19_03804 0.21 +0.1
38,164 - MPMX19_03804 0.21 -1.4
38,164 - MPMX19_03804 0.21 -0.7
38,164 - MPMX19_03804 0.21 -0.9
38,164 - MPMX19_03804 0.21 -0.4

Or see this region's nucleotide sequence