Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03798 and MPMX19_03799 are separated by 383 nucleotides MPMX19_03799 and MPMX19_03800 are separated by 13 nucleotides MPMX19_03800 and MPMX19_03801 are separated by 9 nucleotides
MPMX19_03798: MPMX19_03798 - hypothetical protein, at 33,462 to 34,343
_03798
MPMX19_03799: MPMX19_03799 - hypothetical protein, at 34,727 to 35,869
_03799
MPMX19_03800: MPMX19_03800 - hypothetical protein, at 35,883 to 36,302
_03800
MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238
_03801
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.792 kb on + strand, within MPMX19_03798 at 33.792 kb on + strand, within MPMX19_03798 at 33.795 kb on - strand, within MPMX19_03798 at 33.795 kb on - strand, within MPMX19_03798 at 33.804 kb on + strand, within MPMX19_03798 at 33.805 kb on - strand, within MPMX19_03798 at 33.807 kb on - strand, within MPMX19_03798 at 33.826 kb on + strand, within MPMX19_03798 at 33.983 kb on + strand, within MPMX19_03798 at 34.347 kb on + strand at 34.404 kb on + strand at 34.412 kb on + strand at 34.413 kb on - strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.414 kb on + strand at 34.415 kb on - strand at 34.415 kb on - strand at 34.569 kb on + strand at 34.570 kb on - strand at 34.570 kb on - strand at 34.651 kb on + strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.652 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.654 kb on - strand at 34.685 kb on + strand at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.847 kb on + strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.848 kb on - strand, within MPMX19_03799 at 34.849 kb on - strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.910 kb on + strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 34.911 kb on - strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.075 kb on + strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.076 kb on - strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.246 kb on + strand, within MPMX19_03799 at 35.247 kb on - strand, within MPMX19_03799 at 35.247 kb on - strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.389 kb on + strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.390 kb on - strand, within MPMX19_03799 at 35.759 kb on + strand at 35.759 kb on + strand at 35.760 kb on - strand at 35.760 kb on - strand at 35.760 kb on - strand at 35.760 kb on - strand at 35.760 kb on - strand at 35.834 kb on + strand at 35.835 kb on - strand at 35.896 kb on + strand at 35.897 kb on - strand at 36.012 kb on + strand, within MPMX19_03800 at 36.012 kb on + strand, within MPMX19_03800 at 36.012 kb on + strand, within MPMX19_03800 at 36.012 kb on + strand, within MPMX19_03800 at 36.012 kb on + strand, within MPMX19_03800 at 36.301 kb on - strand at 36.301 kb on - strand at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.480 kb on + strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.481 kb on - strand, within MPMX19_03801 at 36.531 kb on + strand, within MPMX19_03801 at 36.532 kb on - strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.825 kb on - strand, within MPMX19_03801
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 33,792 + MPMX19_03798 0.37 -1.1 33,792 + MPMX19_03798 0.37 +1.5 33,795 - MPMX19_03798 0.38 -1.1 33,795 - MPMX19_03798 0.38 -0.7 33,804 + MPMX19_03798 0.39 -1.5 33,805 - MPMX19_03798 0.39 -0.7 33,807 - MPMX19_03798 0.39 -0.9 33,826 + MPMX19_03798 0.41 +0.5 33,983 + MPMX19_03798 0.59 +0.6 34,347 + -1.0 34,404 + -1.6 34,412 + -1.1 34,413 - +0.5 34,414 + -0.1 34,414 + -0.5 34,414 + -2.1 34,414 + -1.5 34,414 + -0.1 34,414 + -1.4 34,414 + -0.5 34,414 + -1.1 34,415 - -0.3 34,415 - +0.2 34,569 + -1.5 34,570 - -1.1 34,570 - -1.5 34,651 + -2.5 34,652 - -0.9 34,652 - +0.9 34,652 - +0.2 34,652 - -1.0 34,654 - -1.4 34,654 - -0.1 34,654 - -1.9 34,654 - -0.9 34,685 + -0.9 34,847 + MPMX19_03799 0.10 -0.9 34,847 + MPMX19_03799 0.10 +0.7 34,847 + MPMX19_03799 0.10 -1.1 34,847 + MPMX19_03799 0.10 -0.5 34,847 + MPMX19_03799 0.10 -0.6 34,847 + MPMX19_03799 0.10 -0.4 34,847 + MPMX19_03799 0.10 -0.5 34,847 + MPMX19_03799 0.10 +0.5 34,847 + MPMX19_03799 0.10 -0.4 34,848 - MPMX19_03799 0.11 -0.8 34,848 - MPMX19_03799 0.11 -0.9 34,848 - MPMX19_03799 0.11 -0.2 34,848 - MPMX19_03799 0.11 -1.5 34,848 - MPMX19_03799 0.11 +0.7 34,848 - MPMX19_03799 0.11 -0.1 34,848 - MPMX19_03799 0.11 -2.1 34,848 - MPMX19_03799 0.11 -0.8 34,848 - MPMX19_03799 0.11 +1.0 34,848 - MPMX19_03799 0.11 -0.9 34,848 - MPMX19_03799 0.11 -0.1 34,848 - MPMX19_03799 0.11 +1.5 34,848 - MPMX19_03799 0.11 +0.0 34,848 - MPMX19_03799 0.11 -0.7 34,848 - MPMX19_03799 0.11 -0.5 34,848 - MPMX19_03799 0.11 -0.4 34,848 - MPMX19_03799 0.11 -0.0 34,848 - MPMX19_03799 0.11 -0.9 34,848 - MPMX19_03799 0.11 -1.8 34,848 - MPMX19_03799 0.11 -1.9 34,849 - MPMX19_03799 0.11 -1.5 34,910 + MPMX19_03799 0.16 +0.9 34,910 + MPMX19_03799 0.16 -1.3 34,910 + MPMX19_03799 0.16 +0.5 34,910 + MPMX19_03799 0.16 -1.5 34,910 + MPMX19_03799 0.16 -1.4 34,910 + MPMX19_03799 0.16 +1.1 34,910 + MPMX19_03799 0.16 -0.3 34,911 - MPMX19_03799 0.16 -0.9 34,911 - MPMX19_03799 0.16 -0.8 34,911 - MPMX19_03799 0.16 -0.1 35,075 + MPMX19_03799 0.30 -0.9 35,075 + MPMX19_03799 0.30 +0.5 35,075 + MPMX19_03799 0.30 +0.4 35,075 + MPMX19_03799 0.30 -1.8 35,075 + MPMX19_03799 0.30 -1.9 35,075 + MPMX19_03799 0.30 -0.0 35,075 + MPMX19_03799 0.30 -1.0 35,075 + MPMX19_03799 0.30 -1.3 35,075 + MPMX19_03799 0.30 +0.3 35,075 + MPMX19_03799 0.30 -1.2 35,076 - MPMX19_03799 0.31 -0.5 35,076 - MPMX19_03799 0.31 -0.5 35,076 - MPMX19_03799 0.31 -0.7 35,076 - MPMX19_03799 0.31 +1.1 35,076 - MPMX19_03799 0.31 -0.7 35,076 - MPMX19_03799 0.31 -0.4 35,076 - MPMX19_03799 0.31 -2.1 35,076 - MPMX19_03799 0.31 +0.1 35,076 - MPMX19_03799 0.31 -2.6 35,246 + MPMX19_03799 0.45 -2.8 35,246 + MPMX19_03799 0.45 -0.4 35,246 + MPMX19_03799 0.45 -0.5 35,247 - MPMX19_03799 0.45 -1.4 35,247 - MPMX19_03799 0.45 -0.5 35,389 + MPMX19_03799 0.58 +1.1 35,389 + MPMX19_03799 0.58 -1.1 35,389 + MPMX19_03799 0.58 -1.9 35,389 + MPMX19_03799 0.58 -2.1 35,389 + MPMX19_03799 0.58 -1.9 35,389 + MPMX19_03799 0.58 -0.9 35,389 + MPMX19_03799 0.58 -1.4 35,389 + MPMX19_03799 0.58 +0.0 35,389 + MPMX19_03799 0.58 -0.9 35,389 + MPMX19_03799 0.58 +1.0 35,389 + MPMX19_03799 0.58 -1.5 35,389 + MPMX19_03799 0.58 -0.5 35,389 + MPMX19_03799 0.58 -0.6 35,389 + MPMX19_03799 0.58 +0.5 35,389 + MPMX19_03799 0.58 -1.5 35,390 - MPMX19_03799 0.58 -0.1 35,390 - MPMX19_03799 0.58 -1.0 35,390 - MPMX19_03799 0.58 -0.5 35,390 - MPMX19_03799 0.58 -0.1 35,390 - MPMX19_03799 0.58 -0.1 35,390 - MPMX19_03799 0.58 +0.5 35,390 - MPMX19_03799 0.58 -0.5 35,390 - MPMX19_03799 0.58 -0.9 35,390 - MPMX19_03799 0.58 -1.4 35,390 - MPMX19_03799 0.58 +0.5 35,390 - MPMX19_03799 0.58 -0.1 35,390 - MPMX19_03799 0.58 +0.6 35,390 - MPMX19_03799 0.58 -0.9 35,390 - MPMX19_03799 0.58 -0.5 35,390 - MPMX19_03799 0.58 -0.7 35,390 - MPMX19_03799 0.58 -0.2 35,759 + -0.5 35,759 + -0.1 35,760 - +0.6 35,760 - -0.9 35,760 - -1.4 35,760 - -0.1 35,760 - +1.6 35,834 + +1.5 35,835 - -0.9 35,896 + -1.3 35,897 - +1.5 36,012 + MPMX19_03800 0.31 -0.5 36,012 + MPMX19_03800 0.31 -1.5 36,012 + MPMX19_03800 0.31 +0.9 36,012 + MPMX19_03800 0.31 -1.2 36,012 + MPMX19_03800 0.31 +1.5 36,301 - +1.0 36,301 - -1.5 36,480 + MPMX19_03801 0.18 -1.5 36,480 + MPMX19_03801 0.18 +0.5 36,480 + MPMX19_03801 0.18 -0.4 36,480 + MPMX19_03801 0.18 -0.7 36,480 + MPMX19_03801 0.18 -0.1 36,480 + MPMX19_03801 0.18 -0.1 36,480 + MPMX19_03801 0.18 -1.9 36,481 - MPMX19_03801 0.18 -1.4 36,481 - MPMX19_03801 0.18 -0.5 36,481 - MPMX19_03801 0.18 +0.9 36,481 - MPMX19_03801 0.18 -1.1 36,481 - MPMX19_03801 0.18 -0.1 36,481 - MPMX19_03801 0.18 +0.1 36,481 - MPMX19_03801 0.18 -0.1 36,481 - MPMX19_03801 0.18 -1.4 36,531 + MPMX19_03801 0.24 -0.5 36,532 - MPMX19_03801 0.24 -1.0 36,681 + MPMX19_03801 0.40 -1.7 36,681 + MPMX19_03801 0.40 -2.5 36,681 + MPMX19_03801 0.40 -0.7 36,717 + MPMX19_03801 0.44 -1.4 36,717 + MPMX19_03801 0.44 -0.9 36,717 + MPMX19_03801 0.44 +1.5 36,717 + MPMX19_03801 0.44 -0.5 36,718 - MPMX19_03801 0.44 -0.4 36,718 - MPMX19_03801 0.44 +1.0 36,825 - MPMX19_03801 0.55 -1.0
Or see this region's nucleotide sequence