Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03687 and MPMX19_03688 overlap by 4 nucleotides MPMX19_03688 and MPMX19_03689 are separated by 6 nucleotides MPMX19_03689 and MPMX19_03690 are separated by 69 nucleotides
MPMX19_03687: MPMX19_03687 - hypothetical protein, at 1,127,706 to 1,129,040
_03687
MPMX19_03688: MPMX19_03688 - Response regulator UvrY, at 1,129,037 to 1,129,669
_03688
MPMX19_03689: MPMX19_03689 - Transcriptional regulator MntR, at 1,129,676 to 1,130,158
_03689
MPMX19_03690: MPMX19_03690 - Divalent metal cation transporter MntH, at 1,130,228 to 1,131,586
_03690
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.204 kb on + strand, within MPMX19_03688 at 1129.205 kb on - strand, within MPMX19_03688 at 1129.340 kb on + strand, within MPMX19_03688 at 1129.340 kb on + strand, within MPMX19_03688 at 1129.340 kb on + strand, within MPMX19_03688 at 1129.340 kb on + strand, within MPMX19_03688 at 1129.341 kb on - strand, within MPMX19_03688 at 1129.341 kb on - strand, within MPMX19_03688 at 1129.341 kb on - strand, within MPMX19_03688 at 1129.884 kb on + strand, within MPMX19_03689 at 1129.884 kb on + strand, within MPMX19_03689 at 1129.884 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.016 kb on + strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.017 kb on - strand, within MPMX19_03689 at 1130.151 kb on + strand at 1130.151 kb on + strand at 1130.152 kb on - strand at 1130.152 kb on - strand at 1130.153 kb on + strand at 1130.153 kb on + strand at 1130.153 kb on + strand at 1130.153 kb on + strand at 1130.154 kb on - strand at 1130.154 kb on - strand at 1130.154 kb on - strand at 1130.154 kb on - strand at 1130.154 kb on - strand at 1130.165 kb on + strand at 1130.166 kb on - strand at 1130.166 kb on - strand at 1130.180 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.184 kb on + strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.185 kb on - strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.273 kb on + strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.274 kb on - strand at 1130.387 kb on + strand, within MPMX19_03690 at 1130.387 kb on + strand, within MPMX19_03690 at 1130.387 kb on + strand, within MPMX19_03690 at 1130.387 kb on + strand, within MPMX19_03690 at 1130.388 kb on - strand, within MPMX19_03690 at 1130.388 kb on - strand, within MPMX19_03690 at 1130.388 kb on - strand, within MPMX19_03690 at 1130.388 kb on - strand, within MPMX19_03690 at 1130.388 kb on - strand, within MPMX19_03690 at 1130.405 kb on + strand, within MPMX19_03690 at 1130.405 kb on + strand, within MPMX19_03690 at 1130.405 kb on + strand, within MPMX19_03690 at 1130.405 kb on + strand, within MPMX19_03690 at 1130.405 kb on + strand, within MPMX19_03690 at 1130.406 kb on - strand, within MPMX19_03690 at 1130.406 kb on - strand, within MPMX19_03690 at 1130.406 kb on - strand, within MPMX19_03690 at 1130.406 kb on - strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.407 kb on + strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.408 kb on - strand, within MPMX19_03690 at 1130.459 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.461 kb on + strand, within MPMX19_03690 at 1130.462 kb on - strand, within MPMX19_03690 at 1130.462 kb on - strand, within MPMX19_03690 at 1130.462 kb on - strand, within MPMX19_03690 at 1130.462 kb on - strand, within MPMX19_03690 at 1130.462 kb on - strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.909 kb on + strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.910 kb on - strand, within MPMX19_03690 at 1130.957 kb on + strand, within MPMX19_03690 at 1130.957 kb on + strand, within MPMX19_03690 at 1130.958 kb on - strand, within MPMX19_03690 at 1130.958 kb on - strand, within MPMX19_03690 at 1130.958 kb on - strand, within MPMX19_03690 at 1130.958 kb on - strand, within MPMX19_03690 at 1130.991 kb on - strand, within MPMX19_03690
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,129,204 + MPMX19_03688 0.26 -0.2 1,129,204 + MPMX19_03688 0.26 +0.3 1,129,204 + MPMX19_03688 0.26 -1.5 1,129,204 + MPMX19_03688 0.26 +0.4 1,129,204 + MPMX19_03688 0.26 +0.6 1,129,204 + MPMX19_03688 0.26 -1.3 1,129,204 + MPMX19_03688 0.26 +1.6 1,129,204 + MPMX19_03688 0.26 -0.8 1,129,205 - MPMX19_03688 0.27 -0.2 1,129,340 + MPMX19_03688 0.48 -0.7 1,129,340 + MPMX19_03688 0.48 -0.7 1,129,340 + MPMX19_03688 0.48 +0.9 1,129,340 + MPMX19_03688 0.48 -1.0 1,129,341 - MPMX19_03688 0.48 +0.2 1,129,341 - MPMX19_03688 0.48 -0.2 1,129,341 - MPMX19_03688 0.48 -1.8 1,129,884 + MPMX19_03689 0.43 -1.2 1,129,884 + MPMX19_03689 0.43 -1.4 1,129,884 + MPMX19_03689 0.43 +0.0 1,130,016 + MPMX19_03689 0.70 -1.8 1,130,016 + MPMX19_03689 0.70 -1.5 1,130,016 + MPMX19_03689 0.70 -0.8 1,130,016 + MPMX19_03689 0.70 -0.4 1,130,016 + MPMX19_03689 0.70 +0.3 1,130,016 + MPMX19_03689 0.70 +0.6 1,130,016 + MPMX19_03689 0.70 -1.0 1,130,016 + MPMX19_03689 0.70 -0.8 1,130,016 + MPMX19_03689 0.70 -3.6 1,130,016 + MPMX19_03689 0.70 -1.0 1,130,017 - MPMX19_03689 0.71 -0.7 1,130,017 - MPMX19_03689 0.71 -0.7 1,130,017 - MPMX19_03689 0.71 -2.4 1,130,017 - MPMX19_03689 0.71 -1.4 1,130,017 - MPMX19_03689 0.71 -0.4 1,130,017 - MPMX19_03689 0.71 -1.7 1,130,017 - MPMX19_03689 0.71 -2.3 1,130,017 - MPMX19_03689 0.71 +2.4 1,130,017 - MPMX19_03689 0.71 +1.0 1,130,017 - MPMX19_03689 0.71 -2.0 1,130,017 - MPMX19_03689 0.71 -1.0 1,130,017 - MPMX19_03689 0.71 -1.3 1,130,151 + -2.4 1,130,151 + -0.2 1,130,152 - +1.6 1,130,152 - -1.8 1,130,153 + -2.3 1,130,153 + -0.4 1,130,153 + +0.6 1,130,153 + -0.4 1,130,154 - -2.2 1,130,154 - -0.2 1,130,154 - +1.2 1,130,154 - -1.9 1,130,154 - -0.7 1,130,165 + -1.2 1,130,166 - -0.8 1,130,166 - +0.6 1,130,180 + -1.0 1,130,184 + -0.4 1,130,184 + +0.6 1,130,184 + -1.5 1,130,184 + -1.0 1,130,184 + -1.0 1,130,184 + -0.5 1,130,184 + +1.0 1,130,184 + -2.0 1,130,184 + -0.4 1,130,184 + -0.6 1,130,184 + -2.8 1,130,184 + -1.2 1,130,184 + +0.6 1,130,184 + -2.1 1,130,184 + +0.6 1,130,185 - +1.2 1,130,185 - -1.2 1,130,185 - -1.0 1,130,185 - -1.0 1,130,185 - -1.2 1,130,185 - -0.1 1,130,185 - -1.5 1,130,185 - -1.8 1,130,185 - -0.8 1,130,185 - -1.9 1,130,185 - -1.0 1,130,185 - +0.3 1,130,273 + -2.5 1,130,273 + +0.2 1,130,273 + +0.4 1,130,273 + -0.5 1,130,273 + +1.6 1,130,273 + -1.1 1,130,273 + -0.2 1,130,273 + -0.2 1,130,273 + -1.4 1,130,273 + -2.0 1,130,274 - -1.2 1,130,274 - -0.7 1,130,274 - -0.7 1,130,274 - -0.7 1,130,274 - -0.7 1,130,274 - +0.0 1,130,274 - -1.2 1,130,274 - -0.7 1,130,274 - -0.2 1,130,387 + MPMX19_03690 0.12 -0.7 1,130,387 + MPMX19_03690 0.12 -0.7 1,130,387 + MPMX19_03690 0.12 +0.0 1,130,387 + MPMX19_03690 0.12 +0.5 1,130,388 - MPMX19_03690 0.12 -1.2 1,130,388 - MPMX19_03690 0.12 -0.2 1,130,388 - MPMX19_03690 0.12 -2.0 1,130,388 - MPMX19_03690 0.12 +0.5 1,130,388 - MPMX19_03690 0.12 -0.2 1,130,405 + MPMX19_03690 0.13 +0.0 1,130,405 + MPMX19_03690 0.13 +0.3 1,130,405 + MPMX19_03690 0.13 -0.4 1,130,405 + MPMX19_03690 0.13 +0.2 1,130,405 + MPMX19_03690 0.13 -0.4 1,130,406 - MPMX19_03690 0.13 -0.4 1,130,406 - MPMX19_03690 0.13 +0.6 1,130,406 - MPMX19_03690 0.13 +0.3 1,130,406 - MPMX19_03690 0.13 -0.5 1,130,407 + MPMX19_03690 0.13 +0.3 1,130,407 + MPMX19_03690 0.13 -1.5 1,130,407 + MPMX19_03690 0.13 -1.4 1,130,407 + MPMX19_03690 0.13 +0.3 1,130,407 + MPMX19_03690 0.13 +0.6 1,130,407 + MPMX19_03690 0.13 -0.6 1,130,407 + MPMX19_03690 0.13 +0.6 1,130,407 + MPMX19_03690 0.13 +0.0 1,130,407 + MPMX19_03690 0.13 -1.5 1,130,407 + MPMX19_03690 0.13 -0.4 1,130,408 - MPMX19_03690 0.13 +0.9 1,130,408 - MPMX19_03690 0.13 -0.4 1,130,408 - MPMX19_03690 0.13 -0.7 1,130,408 - MPMX19_03690 0.13 +1.3 1,130,408 - MPMX19_03690 0.13 -1.2 1,130,408 - MPMX19_03690 0.13 +0.0 1,130,408 - MPMX19_03690 0.13 +0.3 1,130,408 - MPMX19_03690 0.13 -1.0 1,130,408 - MPMX19_03690 0.13 +0.2 1,130,408 - MPMX19_03690 0.13 -1.8 1,130,408 - MPMX19_03690 0.13 +0.4 1,130,408 - MPMX19_03690 0.13 +1.6 1,130,459 + MPMX19_03690 0.17 -1.4 1,130,461 + MPMX19_03690 0.17 -0.2 1,130,461 + MPMX19_03690 0.17 +0.4 1,130,461 + MPMX19_03690 0.17 -0.4 1,130,461 + MPMX19_03690 0.17 -0.7 1,130,461 + MPMX19_03690 0.17 -1.2 1,130,461 + MPMX19_03690 0.17 -0.5 1,130,461 + MPMX19_03690 0.17 -1.4 1,130,462 - MPMX19_03690 0.17 +0.9 1,130,462 - MPMX19_03690 0.17 +0.6 1,130,462 - MPMX19_03690 0.17 -1.4 1,130,462 - MPMX19_03690 0.17 -1.8 1,130,462 - MPMX19_03690 0.17 -1.4 1,130,909 + MPMX19_03690 0.50 -0.7 1,130,909 + MPMX19_03690 0.50 -1.1 1,130,909 + MPMX19_03690 0.50 -0.7 1,130,909 + MPMX19_03690 0.50 -3.0 1,130,909 + MPMX19_03690 0.50 +1.3 1,130,909 + MPMX19_03690 0.50 -0.8 1,130,910 - MPMX19_03690 0.50 +0.5 1,130,910 - MPMX19_03690 0.50 -0.5 1,130,910 - MPMX19_03690 0.50 -1.1 1,130,910 - MPMX19_03690 0.50 -1.1 1,130,910 - MPMX19_03690 0.50 -0.1 1,130,910 - MPMX19_03690 0.50 +0.0 1,130,910 - MPMX19_03690 0.50 +0.3 1,130,910 - MPMX19_03690 0.50 -0.3 1,130,910 - MPMX19_03690 0.50 -0.4 1,130,910 - MPMX19_03690 0.50 -2.1 1,130,910 - MPMX19_03690 0.50 +0.8 1,130,910 - MPMX19_03690 0.50 -0.4 1,130,957 + MPMX19_03690 0.54 -2.4 1,130,957 + MPMX19_03690 0.54 -1.5 1,130,958 - MPMX19_03690 0.54 -0.4 1,130,958 - MPMX19_03690 0.54 -0.4 1,130,958 - MPMX19_03690 0.54 -0.4 1,130,958 - MPMX19_03690 0.54 -1.5 1,130,991 - MPMX19_03690 0.56 -0.7
Or see this region's nucleotide sequence