Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03567

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03565 and MPMX19_03566 are separated by 33 nucleotidesMPMX19_03566 and MPMX19_03567 are separated by 51 nucleotidesMPMX19_03567 and MPMX19_03568 are separated by 77 nucleotides MPMX19_03565: MPMX19_03565 - hypothetical protein, at 987,474 to 987,866 _03565 MPMX19_03566: MPMX19_03566 - Lactoylglutathione lyase, at 987,900 to 988,295 _03566 MPMX19_03567: MPMX19_03567 - hypothetical protein, at 988,347 to 988,901 _03567 MPMX19_03568: MPMX19_03568 - 2-methyl-1,2-propanediol dehydrogenase, at 988,979 to 990,550 _03568 Position (kb) 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1at 987.529 kb on + strand, within MPMX19_03565at 987.530 kb on - strand, within MPMX19_03565at 987.651 kb on + strand, within MPMX19_03565at 987.651 kb on + strand, within MPMX19_03565at 987.652 kb on - strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.960 kb on + strand, within MPMX19_03566at 987.960 kb on + strand, within MPMX19_03566at 987.960 kb on + strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.090 kb on - strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.293 kb on + strandat 988.318 kb on - strandat 988.540 kb on - strand, within MPMX19_03567at 988.540 kb on - strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.825 kb on - strand, within MPMX19_03567at 988.845 kb on + strand, within MPMX19_03567at 988.854 kb on + strandat 988.854 kb on + strandat 988.854 kb on + strandat 988.855 kb on - strandat 988.855 kb on - strandat 988.855 kb on - strandat 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.322 kb on - strand, within MPMX19_03568at 989.322 kb on - strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.385 kb on - strand, within MPMX19_03568at 989.385 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.496 kb on - strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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987,529 + MPMX19_03565 0.14 -0.7
987,530 - MPMX19_03565 0.14 +1.0
987,651 + MPMX19_03565 0.45 +0.8
987,651 + MPMX19_03565 0.45 -1.7
987,652 - MPMX19_03565 0.45 -1.4
987,789 + MPMX19_03565 0.80 +1.0
987,789 + MPMX19_03565 0.80 +0.6
987,789 + MPMX19_03565 0.80 -1.0
987,789 + MPMX19_03565 0.80 +0.6
987,789 + MPMX19_03565 0.80 +0.0
987,789 + MPMX19_03565 0.80 -1.1
987,789 + MPMX19_03565 0.80 -0.3
987,789 + MPMX19_03565 0.80 -2.6
987,789 + MPMX19_03565 0.80 -1.6
987,789 + MPMX19_03565 0.80 -0.4
987,789 + MPMX19_03565 0.80 +0.0
987,789 + MPMX19_03565 0.80 +0.8
987,789 + MPMX19_03565 0.80 +0.0
987,789 + MPMX19_03565 0.80 +1.0
987,790 - MPMX19_03565 0.80 -1.0
987,790 - MPMX19_03565 0.80 +0.6
987,790 - MPMX19_03565 0.80 -0.9
987,790 - MPMX19_03565 0.80 +0.0
987,790 - MPMX19_03565 0.80 -0.6
987,790 - MPMX19_03565 0.80 -0.8
987,798 + MPMX19_03565 0.82 +0.6
987,798 + MPMX19_03565 0.82 -0.1
987,798 + MPMX19_03565 0.82 -0.4
987,960 + MPMX19_03566 0.15 -2.6
987,960 + MPMX19_03566 0.15 -3.4
987,960 + MPMX19_03566 0.15 -2.0
987,961 - MPMX19_03566 0.15 -0.9
987,961 - MPMX19_03566 0.15 +0.0
987,961 - MPMX19_03566 0.15 -1.1
987,961 - MPMX19_03566 0.15 -1.1
987,961 - MPMX19_03566 0.15 +0.4
988,023 + MPMX19_03566 0.31 -2.0
988,023 + MPMX19_03566 0.31 -0.5
988,023 + MPMX19_03566 0.31 -0.6
988,024 - MPMX19_03566 0.31 -1.6
988,024 - MPMX19_03566 0.31 -0.4
988,089 + MPMX19_03566 0.48 -1.0
988,089 + MPMX19_03566 0.48 -1.0
988,089 + MPMX19_03566 0.48 -0.6
988,089 + MPMX19_03566 0.48 -1.6
988,089 + MPMX19_03566 0.48 -1.3
988,090 - MPMX19_03566 0.48 -0.9
988,254 + MPMX19_03566 0.89 +1.2
988,254 + MPMX19_03566 0.89 -0.4
988,254 + MPMX19_03566 0.89 +0.0
988,255 - MPMX19_03566 0.90 -0.0
988,255 - MPMX19_03566 0.90 +0.3
988,255 - MPMX19_03566 0.90 -1.4
988,293 + -2.2
988,318 - +0.5
988,540 - MPMX19_03567 0.35 -1.0
988,540 - MPMX19_03567 0.35 +0.6
988,566 + MPMX19_03567 0.39 +0.4
988,566 + MPMX19_03567 0.39 +0.0
988,567 - MPMX19_03567 0.40 +0.6
988,567 - MPMX19_03567 0.40 -0.1
988,567 - MPMX19_03567 0.40 -0.7
988,567 - MPMX19_03567 0.40 -0.7
988,567 - MPMX19_03567 0.40 +0.4
988,569 + MPMX19_03567 0.40 -1.4
988,569 + MPMX19_03567 0.40 -1.0
988,569 + MPMX19_03567 0.40 +1.0
988,569 + MPMX19_03567 0.40 -0.3
988,570 - MPMX19_03567 0.40 +1.3
988,570 - MPMX19_03567 0.40 +1.6
988,689 + MPMX19_03567 0.62 -1.6
988,689 + MPMX19_03567 0.62 -1.4
988,689 + MPMX19_03567 0.62 -1.9
988,689 + MPMX19_03567 0.62 +1.6
988,689 + MPMX19_03567 0.62 -1.2
988,689 + MPMX19_03567 0.62 -1.0
988,689 + MPMX19_03567 0.62 -1.0
988,689 + MPMX19_03567 0.62 +0.3
988,690 - MPMX19_03567 0.62 -0.2
988,690 - MPMX19_03567 0.62 -0.7
988,690 - MPMX19_03567 0.62 -0.4
988,791 + MPMX19_03567 0.80 +0.0
988,791 + MPMX19_03567 0.80 -1.2
988,792 - MPMX19_03567 0.80 -1.4
988,792 - MPMX19_03567 0.80 -1.9
988,825 - MPMX19_03567 0.86 -1.4
988,845 + MPMX19_03567 0.90 -0.4
988,854 + -2.4
988,854 + -0.7
988,854 + -0.7
988,855 - -0.8
988,855 - +0.2
988,855 - -0.6
989,321 + MPMX19_03568 0.22 +0.6
989,321 + MPMX19_03568 0.22 -1.0
989,321 + MPMX19_03568 0.22 -0.2
989,321 + MPMX19_03568 0.22 +0.6
989,322 - MPMX19_03568 0.22 +1.6
989,322 - MPMX19_03568 0.22 -0.8
989,384 + MPMX19_03568 0.26 -0.7
989,384 + MPMX19_03568 0.26 +0.6
989,384 + MPMX19_03568 0.26 -2.1
989,385 - MPMX19_03568 0.26 +0.9
989,385 - MPMX19_03568 0.26 -0.4
989,388 - MPMX19_03568 0.26 -1.0
989,388 - MPMX19_03568 0.26 -0.9
989,388 - MPMX19_03568 0.26 -1.9
989,388 - MPMX19_03568 0.26 -1.0
989,459 + MPMX19_03568 0.31 -0.4
989,459 + MPMX19_03568 0.31 -0.5
989,459 + MPMX19_03568 0.31 +0.2
989,459 + MPMX19_03568 0.31 -1.5
989,459 + MPMX19_03568 0.31 -1.2
989,459 + MPMX19_03568 0.31 -1.9
989,459 + MPMX19_03568 0.31 -1.0
989,460 - MPMX19_03568 0.31 -1.0
989,460 - MPMX19_03568 0.31 +1.1
989,460 - MPMX19_03568 0.31 -1.1
989,460 - MPMX19_03568 0.31 +0.6
989,460 - MPMX19_03568 0.31 -0.7
989,460 - MPMX19_03568 0.31 +0.1
989,460 - MPMX19_03568 0.31 -0.4
989,460 - MPMX19_03568 0.31 -1.6
989,460 - MPMX19_03568 0.31 -0.7
989,496 - MPMX19_03568 0.33 +1.0
989,618 + MPMX19_03568 0.41 -1.7
989,618 + MPMX19_03568 0.41 -0.7
989,618 + MPMX19_03568 0.41 +0.2
989,618 + MPMX19_03568 0.41 -1.2
989,619 - MPMX19_03568 0.41 -1.9
989,619 - MPMX19_03568 0.41 -0.9
989,726 + MPMX19_03568 0.48 -0.7
989,726 + MPMX19_03568 0.48 +0.0
989,726 + MPMX19_03568 0.48 -0.7
989,726 + MPMX19_03568 0.48 -1.2
989,727 - MPMX19_03568 0.48 -1.6
989,727 - MPMX19_03568 0.48 -0.7
989,727 - MPMX19_03568 0.48 -0.9
989,879 + MPMX19_03568 0.57 -1.4
989,879 + MPMX19_03568 0.57 -1.0
989,879 + MPMX19_03568 0.57 -1.5
989,879 + MPMX19_03568 0.57 -0.4
989,879 + MPMX19_03568 0.57 -1.0
989,879 + MPMX19_03568 0.57 -0.2
989,880 - MPMX19_03568 0.57 -1.3
989,880 - MPMX19_03568 0.57 -0.5
989,880 - MPMX19_03568 0.57 -0.4
989,880 - MPMX19_03568 0.57 -0.4
989,880 - MPMX19_03568 0.57 -0.6
989,880 - MPMX19_03568 0.57 -1.4
989,880 - MPMX19_03568 0.57 -0.5

Or see this region's nucleotide sequence