Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03524 and MPMX19_03525 are separated by 40 nucleotides MPMX19_03525 and MPMX19_03526 overlap by 4 nucleotides MPMX19_03526 and MPMX19_03527 are separated by 57 nucleotides MPMX19_03527 and MPMX19_03528 are separated by 12 nucleotides
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805
_03525
MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704
_03526
MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388
_03527
MPMX19_03528: MPMX19_03528 - Sialic acid TRAP transporter large permease protein SiaM, at 947,401 to 948,681
_03528
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.058 kb on + strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.131 kb on - strand at 945.131 kb on - strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.167 kb on - strand at 945.304 kb on + strand at 945.304 kb on + strand at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.843 kb on + strand at 945.843 kb on + strand at 945.843 kb on + strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.705 kb on + strand at 946.706 kb on - strand at 946.722 kb on + strand at 946.722 kb on + strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.784 kb on - strand at 946.784 kb on - strand at 946.865 kb on - strand, within MPMX19_03527 at 946.981 kb on - strand, within MPMX19_03527 at 947.147 kb on - strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.349 kb on + strand at 947.349 kb on + strand at 947.350 kb on - strand at 947.350 kb on - strand at 947.464 kb on + strand at 947.465 kb on - strand at 947.683 kb on + strand, within MPMX19_03528 at 947.684 kb on - strand, within MPMX19_03528 at 947.684 kb on - strand, within MPMX19_03528
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 945,055 + MPMX19_03524 0.86 -0.4 945,055 + MPMX19_03524 0.86 -1.7 945,055 + MPMX19_03524 0.86 -0.2 945,055 + MPMX19_03524 0.86 -0.7 945,055 + MPMX19_03524 0.86 -0.0 945,056 - MPMX19_03524 0.87 -0.0 945,056 - MPMX19_03524 0.87 -0.0 945,056 - MPMX19_03524 0.87 +0.6 945,056 - MPMX19_03524 0.87 -0.7 945,056 - MPMX19_03524 0.87 -1.0 945,056 - MPMX19_03524 0.87 +0.3 945,056 - MPMX19_03524 0.87 -1.4 945,056 - MPMX19_03524 0.87 +0.2 945,056 - MPMX19_03524 0.87 -1.7 945,058 + MPMX19_03524 0.87 -0.0 945,059 - MPMX19_03524 0.87 -1.2 945,059 - MPMX19_03524 0.87 -0.0 945,130 + -1.6 945,130 + -0.7 945,130 + -0.0 945,130 + -0.0 945,130 + -0.7 945,130 + -1.9 945,130 + -2.0 945,131 - -1.1 945,131 - -1.2 945,166 + -1.0 945,166 + -0.7 945,166 + -0.5 945,166 + +2.2 945,166 + -1.0 945,166 + -0.0 945,166 + -0.9 945,166 + -0.9 945,166 + -1.8 945,166 + +0.3 945,166 + -2.0 945,166 + -0.7 945,167 - -2.0 945,304 + +0.5 945,304 + -1.6 945,425 + MPMX19_03525 0.15 -0.4 945,425 + MPMX19_03525 0.15 -0.2 945,425 + MPMX19_03525 0.15 -0.4 945,425 + MPMX19_03525 0.15 -1.7 945,425 + MPMX19_03525 0.15 +0.2 945,425 + MPMX19_03525 0.15 +0.4 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 +1.6 945,425 + MPMX19_03525 0.15 +0.6 945,425 + MPMX19_03525 0.15 -1.6 945,425 + MPMX19_03525 0.15 +0.5 945,425 + MPMX19_03525 0.15 -0.9 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 +0.6 945,425 + MPMX19_03525 0.15 -1.9 945,426 - MPMX19_03525 0.16 +0.4 945,426 - MPMX19_03525 0.16 -0.9 945,426 - MPMX19_03525 0.16 -1.3 945,426 - MPMX19_03525 0.16 +0.8 945,426 - MPMX19_03525 0.16 -0.2 945,426 - MPMX19_03525 0.16 -0.7 945,426 - MPMX19_03525 0.16 -1.6 945,426 - MPMX19_03525 0.16 -0.4 945,426 - MPMX19_03525 0.16 -1.2 945,426 - MPMX19_03525 0.16 +0.6 945,426 - MPMX19_03525 0.16 -1.2 945,426 - MPMX19_03525 0.16 -0.0 945,426 - MPMX19_03525 0.16 -2.3 945,702 - MPMX19_03525 0.77 -1.2 945,702 - MPMX19_03525 0.77 +0.3 945,752 + MPMX19_03525 0.88 +0.6 945,752 + MPMX19_03525 0.88 -0.6 945,752 + MPMX19_03525 0.88 -1.6 945,752 + MPMX19_03525 0.88 -0.0 945,752 + MPMX19_03525 0.88 -0.0 945,753 - MPMX19_03525 0.88 +0.3 945,753 - MPMX19_03525 0.88 -1.2 945,753 - MPMX19_03525 0.88 -2.1 945,753 - MPMX19_03525 0.88 -0.4 945,843 + +0.6 945,843 + -1.3 945,843 + +0.3 945,844 - -0.7 945,844 - -1.4 945,844 - -0.4 945,844 - -0.7 945,844 - +0.5 945,938 - MPMX19_03526 0.15 -0.7 945,938 - MPMX19_03526 0.15 -1.1 945,938 - MPMX19_03526 0.15 -0.4 946,018 + MPMX19_03526 0.24 -1.4 946,018 + MPMX19_03526 0.24 -1.4 946,018 + MPMX19_03526 0.24 -0.0 946,019 - MPMX19_03526 0.24 -0.4 946,019 - MPMX19_03526 0.24 -1.2 946,019 - MPMX19_03526 0.24 -1.2 946,039 + MPMX19_03526 0.26 -1.1 946,039 + MPMX19_03526 0.26 -0.2 946,039 + MPMX19_03526 0.26 -1.0 946,039 + MPMX19_03526 0.26 -1.1 946,040 - MPMX19_03526 0.26 +0.8 946,040 - MPMX19_03526 0.26 -1.0 946,040 - MPMX19_03526 0.26 -2.4 946,519 + MPMX19_03526 0.79 -2.2 946,519 + MPMX19_03526 0.79 -1.9 946,520 - MPMX19_03526 0.80 -1.0 946,520 - MPMX19_03526 0.80 +1.6 946,705 + -1.2 946,706 - -0.0 946,722 + -1.2 946,722 + -0.7 946,723 - -0.7 946,723 - -1.4 946,723 - -3.0 946,723 - +2.0 946,728 + -2.2 946,728 + -0.9 946,728 + +0.8 946,728 + -2.3 946,728 + +0.7 946,728 + +0.8 946,728 + -1.6 946,728 + -0.2 946,728 + -0.4 946,728 + -0.4 946,728 + -1.5 946,729 - +0.4 946,729 - +1.1 946,729 - -0.0 946,729 - +0.8 946,729 - -1.2 946,729 - +0.6 946,729 - -1.0 946,729 - -1.4 946,729 - -0.0 946,729 - -1.2 946,783 + -0.0 946,783 + -1.6 946,783 + -1.1 946,783 + -0.5 946,783 + -1.6 946,783 + -0.7 946,784 - +0.4 946,784 - -2.1 946,865 - MPMX19_03527 0.16 -0.7 946,981 - MPMX19_03527 0.35 -0.4 947,147 - MPMX19_03527 0.61 -2.0 947,203 + MPMX19_03527 0.70 -0.7 947,203 + MPMX19_03527 0.70 -2.5 947,203 + MPMX19_03527 0.70 +0.3 947,203 + MPMX19_03527 0.70 -0.7 947,203 + MPMX19_03527 0.70 -0.5 947,203 + MPMX19_03527 0.70 -0.7 947,204 - MPMX19_03527 0.70 -1.5 947,204 - MPMX19_03527 0.70 -0.0 947,204 - MPMX19_03527 0.70 -0.7 947,204 - MPMX19_03527 0.70 +0.4 947,204 - MPMX19_03527 0.70 -0.4 947,204 - MPMX19_03527 0.70 -1.9 947,349 + -0.4 947,349 + -0.4 947,350 - -0.7 947,350 - -0.0 947,464 + -1.2 947,465 - -1.7 947,683 + MPMX19_03528 0.22 -0.0 947,684 - MPMX19_03528 0.22 -1.0 947,684 - MPMX19_03528 0.22 -1.0
Or see this region's nucleotide sequence