Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03500 and MPMX19_03501 are separated by 120 nucleotides MPMX19_03501 and MPMX19_03502 are separated by 44 nucleotides MPMX19_03502 and MPMX19_03503 are separated by 23 nucleotides MPMX19_03503 and MPMX19_03504 are separated by 483 nucleotides
MPMX19_03500: MPMX19_03500 - Sulfur carrier protein FdhD, at 918,791 to 919,627
_03500
MPMX19_03501: MPMX19_03501 - hypothetical protein, at 919,748 to 920,326
_03501
MPMX19_03502: MPMX19_03502 - Hydrogenase maturation factor HybG, at 920,371 to 920,652
_03502
MPMX19_03503: MPMX19_03503 - Hydrogenase maturation factor HybF, at 920,676 to 921,017
_03503
MPMX19_03504: MPMX19_03504 - Sulfur carrier protein FdhD, at 921,501 to 922,283
_03504
Position (kb) 920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.598 kb on + strand at 919.598 kb on + strand at 919.598 kb on + strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.664 kb on + strand at 919.664 kb on + strand at 919.890 kb on + strand, within MPMX19_03501 at 920.855 kb on + strand, within MPMX19_03503 at 920.856 kb on - strand, within MPMX19_03503 at 920.856 kb on - strand, within MPMX19_03503 at 921.046 kb on + strand at 921.152 kb on - strand at 921.337 kb on + strand at 921.338 kb on - strand at 921.414 kb on - strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.438 kb on - strand at 921.438 kb on - strand at 921.582 kb on + strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 919,598 + -0.7 919,598 + -0.7 919,598 + -1.3 919,599 - -0.7 919,599 - +0.8 919,599 - -1.2 919,664 + -0.9 919,664 + -1.6 919,890 + MPMX19_03501 0.25 -1.2 920,855 + MPMX19_03503 0.52 -1.4 920,856 - MPMX19_03503 0.53 -0.4 920,856 - MPMX19_03503 0.53 +0.3 921,046 + +0.4 921,152 - -2.0 921,337 + +0.8 921,338 - -1.0 921,414 - -2.6 921,437 + -1.4 921,437 + -0.5 921,437 + -0.2 921,438 - +0.0 921,438 - -1.0 921,582 + MPMX19_03504 0.10 -0.4 921,583 - MPMX19_03504 0.10 -0.9 921,583 - MPMX19_03504 0.10 -2.6 921,583 - MPMX19_03504 0.10 -0.9 921,583 - MPMX19_03504 0.10 -0.7 921,583 - MPMX19_03504 0.10 +2.2 921,583 - MPMX19_03504 0.10 +0.0
Or see this region's nucleotide sequence