Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03449

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03448 and MPMX19_03449 are separated by 211 nucleotidesMPMX19_03449 and MPMX19_03450 are separated by 192 nucleotidesMPMX19_03450 and MPMX19_03451 are separated by 137 nucleotides MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423 _03448 MPMX19_03449: MPMX19_03449 - hypothetical protein, at 845,635 to 846,339 _03449 MPMX19_03450: MPMX19_03450 - hypothetical protein, at 846,532 to 846,750 _03450 MPMX19_03451: MPMX19_03451 - hypothetical protein, at 846,888 to 849,251 _03451 Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1 2at 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.689 kb on - strandat 844.689 kb on - strandat 844.878 kb on + strand, within MPMX19_03448at 844.878 kb on + strand, within MPMX19_03448at 844.878 kb on + strand, within MPMX19_03448at 844.905 kb on + strand, within MPMX19_03448at 844.950 kb on + strand, within MPMX19_03448at 844.951 kb on - strand, within MPMX19_03448at 844.951 kb on - strand, within MPMX19_03448at 845.025 kb on + strand, within MPMX19_03448at 845.025 kb on + strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.170 kb on - strand, within MPMX19_03448at 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.534 kb on + strandat 845.534 kb on + strandat 845.534 kb on + strandat 845.535 kb on - strandat 845.535 kb on - strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.585 kb on - strandat 845.585 kb on - strandat 845.782 kb on + strand, within MPMX19_03449at 845.783 kb on - strand, within MPMX19_03449at 845.818 kb on + strand, within MPMX19_03449at 845.819 kb on - strand, within MPMX19_03449at 845.819 kb on - strand, within MPMX19_03449at 845.851 kb on + strand, within MPMX19_03449at 845.851 kb on + strand, within MPMX19_03449at 845.851 kb on + strand, within MPMX19_03449at 845.908 kb on + strand, within MPMX19_03449at 845.909 kb on - strand, within MPMX19_03449at 845.909 kb on - strand, within MPMX19_03449at 846.029 kb on - strand, within MPMX19_03449at 846.034 kb on + strand, within MPMX19_03449at 846.035 kb on - strand, within MPMX19_03449at 846.067 kb on + strand, within MPMX19_03449at 846.067 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.155 kb on - strand, within MPMX19_03449at 846.155 kb on - strand, within MPMX19_03449at 846.337 kb on + strandat 846.338 kb on - strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.375 kb on - strandat 846.375 kb on - strandat 846.423 kb on + strandat 846.423 kb on + strandat 846.424 kb on - strandat 846.433 kb on + strandat 846.433 kb on + strandat 846.433 kb on + strandat 846.434 kb on - strandat 846.434 kb on - strandat 846.434 kb on - strandat 846.455 kb on + strandat 846.456 kb on - strandat 846.456 kb on - strandat 846.646 kb on + strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 847.143 kb on + strand, within MPMX19_03451at 847.143 kb on + strand, within MPMX19_03451at 847.144 kb on - strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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844,688 + -1.2
844,688 + -1.1
844,688 + +0.2
844,688 + -1.6
844,688 + -0.4
844,689 - -1.0
844,689 - +0.2
844,878 + MPMX19_03448 0.32 -0.4
844,878 + MPMX19_03448 0.32 -0.4
844,878 + MPMX19_03448 0.32 +0.0
844,905 + MPMX19_03448 0.36 -0.7
844,950 + MPMX19_03448 0.41 +1.0
844,951 - MPMX19_03448 0.41 -1.5
844,951 - MPMX19_03448 0.41 -0.7
845,025 + MPMX19_03448 0.51 +1.0
845,025 + MPMX19_03448 0.51 +0.0
845,026 - MPMX19_03448 0.51 -0.6
845,026 - MPMX19_03448 0.51 +0.3
845,026 - MPMX19_03448 0.51 -0.9
845,026 - MPMX19_03448 0.51 -0.4
845,026 - MPMX19_03448 0.51 -1.0
845,169 + MPMX19_03448 0.68 -0.4
845,169 + MPMX19_03448 0.68 -0.4
845,169 + MPMX19_03448 0.68 -0.7
845,170 - MPMX19_03448 0.69 -1.2
845,357 + -2.2
845,357 + -0.1
845,357 + +1.6
845,357 + -1.4
845,357 + +0.6
845,357 + +0.0
845,357 + -1.1
845,357 + -1.0
845,358 - -0.1
845,358 - +0.4
845,358 - +0.0
845,358 - +0.0
845,358 - +0.6
845,534 + -0.4
845,534 + -0.7
845,534 + +1.0
845,535 - +0.0
845,535 - +0.0
845,584 + +0.2
845,584 + +0.0
845,584 + -1.5
845,584 + +1.2
845,585 - -1.6
845,585 - -0.4
845,782 + MPMX19_03449 0.21 +1.0
845,783 - MPMX19_03449 0.21 +0.4
845,818 + MPMX19_03449 0.26 -0.2
845,819 - MPMX19_03449 0.26 +0.0
845,819 - MPMX19_03449 0.26 +1.0
845,851 + MPMX19_03449 0.31 -0.4
845,851 + MPMX19_03449 0.31 -2.6
845,851 + MPMX19_03449 0.31 +0.6
845,908 + MPMX19_03449 0.39 -0.6
845,909 - MPMX19_03449 0.39 -2.1
845,909 - MPMX19_03449 0.39 -1.2
846,029 - MPMX19_03449 0.56 +0.7
846,034 + MPMX19_03449 0.57 -0.9
846,035 - MPMX19_03449 0.57 -0.3
846,067 + MPMX19_03449 0.61 +0.9
846,067 + MPMX19_03449 0.61 -0.4
846,145 + MPMX19_03449 0.72 +0.6
846,145 + MPMX19_03449 0.72 +1.6
846,145 + MPMX19_03449 0.72 -1.0
846,145 + MPMX19_03449 0.72 -0.4
846,145 + MPMX19_03449 0.72 -1.5
846,145 + MPMX19_03449 0.72 -0.6
846,146 - MPMX19_03449 0.72 -0.4
846,146 - MPMX19_03449 0.72 +2.6
846,146 - MPMX19_03449 0.72 +1.9
846,146 - MPMX19_03449 0.72 -0.4
846,146 - MPMX19_03449 0.72 -0.7
846,146 - MPMX19_03449 0.72 +0.6
846,154 + MPMX19_03449 0.74 -0.7
846,154 + MPMX19_03449 0.74 +1.0
846,154 + MPMX19_03449 0.74 +0.6
846,154 + MPMX19_03449 0.74 -1.2
846,154 + MPMX19_03449 0.74 -0.2
846,154 + MPMX19_03449 0.74 +0.6
846,154 + MPMX19_03449 0.74 +0.0
846,155 - MPMX19_03449 0.74 +0.3
846,155 - MPMX19_03449 0.74 +0.0
846,337 + -0.4
846,338 - +1.6
846,374 + +0.3
846,374 + +0.6
846,374 + -1.4
846,374 + -1.3
846,374 + -1.6
846,375 - +0.0
846,375 - +0.8
846,423 + -0.7
846,423 + -1.1
846,424 - -1.2
846,433 + -0.2
846,433 + -0.7
846,433 + +0.6
846,434 - +0.9
846,434 - +0.6
846,434 - -1.0
846,455 + -1.0
846,456 - -1.9
846,456 - +0.2
846,646 + MPMX19_03450 0.52 -1.9
846,647 - MPMX19_03450 0.53 -0.4
846,647 - MPMX19_03450 0.53 +1.6
846,647 - MPMX19_03450 0.53 -0.4
846,647 - MPMX19_03450 0.53 +1.3
847,143 + MPMX19_03451 0.11 -0.8
847,143 + MPMX19_03451 0.11 +0.6
847,144 - MPMX19_03451 0.11 +0.2
847,201 + MPMX19_03451 0.13 -0.7
847,201 + MPMX19_03451 0.13 -0.4
847,201 + MPMX19_03451 0.13 -0.7
847,201 + MPMX19_03451 0.13 +0.0
847,201 + MPMX19_03451 0.13 -1.2
847,201 + MPMX19_03451 0.13 -0.6
847,201 + MPMX19_03451 0.13 -0.3
847,201 + MPMX19_03451 0.13 -0.4
847,201 + MPMX19_03451 0.13 -0.7
847,201 + MPMX19_03451 0.13 +0.0
847,201 + MPMX19_03451 0.13 -0.1
847,201 + MPMX19_03451 0.13 -0.4
847,202 - MPMX19_03451 0.13 -0.7
847,202 - MPMX19_03451 0.13 +1.0
847,202 - MPMX19_03451 0.13 +0.0
847,202 - MPMX19_03451 0.13 -0.7
847,202 - MPMX19_03451 0.13 +0.4
847,202 - MPMX19_03451 0.13 -1.1
847,202 - MPMX19_03451 0.13 -0.9
847,202 - MPMX19_03451 0.13 -0.2
847,202 - MPMX19_03451 0.13 -0.7
847,202 - MPMX19_03451 0.13 -0.5
847,202 - MPMX19_03451 0.13 -0.1
847,202 - MPMX19_03451 0.13 -0.7
847,202 - MPMX19_03451 0.13 -0.2
847,202 - MPMX19_03451 0.13 -1.6
847,202 - MPMX19_03451 0.13 +0.0

Or see this region's nucleotide sequence