Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03385

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03384 and MPMX19_03385 are separated by 273 nucleotidesMPMX19_03385 and MPMX19_03386 are separated by 142 nucleotides MPMX19_03384: MPMX19_03384 - 5-oxoprolinase subunit A, at 768,222 to 769,007 _03384 MPMX19_03385: MPMX19_03385 - HTH-type transcriptional regulator HdfR, at 769,281 to 770,192 _03385 MPMX19_03386: MPMX19_03386 - HTH-type transcriptional activator RhaR, at 770,335 to 771,210 _03386 Position (kb) 769 770 771Strain fitness (log2 ratio) -2 -1 0 1 2at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.499 kb on + strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.728 kb on - strand, within MPMX19_03384at 768.998 kb on + strandat 768.998 kb on + strandat 768.998 kb on + strandat 768.999 kb on - strandat 768.999 kb on - strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.014 kb on - strandat 769.014 kb on - strandat 769.014 kb on - strandat 769.169 kb on - strandat 769.219 kb on + strandat 769.220 kb on - strandat 769.220 kb on - strandat 769.221 kb on + strandat 769.222 kb on - strandat 769.229 kb on - strandat 769.305 kb on + strandat 769.305 kb on + strandat 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.629 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.900 kb on - strand, within MPMX19_03385at 770.013 kb on + strand, within MPMX19_03385at 770.013 kb on + strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.014 kb on - strand, within MPMX19_03385at 770.160 kb on + strandat 770.160 kb on + strandat 770.161 kb on - strandat 770.161 kb on - strandat 770.161 kb on - strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.229 kb on + strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.230 kb on - strandat 770.240 kb on + strandat 770.241 kb on - strandat 770.241 kb on - strandat 770.488 kb on + strand, within MPMX19_03386at 770.488 kb on + strand, within MPMX19_03386at 770.489 kb on - strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.983 kb on - strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 771.145 kb on + strandat 771.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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768,484 + MPMX19_03384 0.33 +0.3
768,484 + MPMX19_03384 0.33 -1.2
768,484 + MPMX19_03384 0.33 -0.4
768,484 + MPMX19_03384 0.33 -1.4
768,484 + MPMX19_03384 0.33 -0.7
768,484 + MPMX19_03384 0.33 +0.6
768,485 - MPMX19_03384 0.33 -1.2
768,485 - MPMX19_03384 0.33 -1.2
768,485 - MPMX19_03384 0.33 +0.0
768,499 + MPMX19_03384 0.35 -0.4
768,500 - MPMX19_03384 0.35 -0.8
768,500 - MPMX19_03384 0.35 +0.6
768,555 + MPMX19_03384 0.42 -1.3
768,555 + MPMX19_03384 0.42 +0.0
768,555 + MPMX19_03384 0.42 +1.0
768,555 + MPMX19_03384 0.42 -0.1
768,555 + MPMX19_03384 0.42 -2.0
768,556 - MPMX19_03384 0.42 -1.5
768,556 - MPMX19_03384 0.42 +0.6
768,556 - MPMX19_03384 0.42 -1.2
768,647 + MPMX19_03384 0.54 +0.1
768,647 + MPMX19_03384 0.54 -0.2
768,647 + MPMX19_03384 0.54 +0.2
768,648 - MPMX19_03384 0.54 -0.1
768,648 - MPMX19_03384 0.54 -0.4
768,648 - MPMX19_03384 0.54 +0.6
768,648 - MPMX19_03384 0.54 +0.9
768,649 + MPMX19_03384 0.54 +0.0
768,649 + MPMX19_03384 0.54 -0.6
768,649 + MPMX19_03384 0.54 +0.2
768,649 + MPMX19_03384 0.54 -0.1
768,649 + MPMX19_03384 0.54 -0.1
768,649 + MPMX19_03384 0.54 -0.2
768,649 + MPMX19_03384 0.54 -0.2
768,649 + MPMX19_03384 0.54 -0.3
768,649 + MPMX19_03384 0.54 -0.6
768,649 + MPMX19_03384 0.54 -1.0
768,649 + MPMX19_03384 0.54 -0.4
768,649 + MPMX19_03384 0.54 -1.4
768,649 + MPMX19_03384 0.54 -0.3
768,649 + MPMX19_03384 0.54 +0.3
768,649 + MPMX19_03384 0.54 -1.6
768,649 + MPMX19_03384 0.54 +0.6
768,649 + MPMX19_03384 0.54 -0.7
768,650 - MPMX19_03384 0.54 -0.2
768,650 - MPMX19_03384 0.54 +1.0
768,650 - MPMX19_03384 0.54 +0.8
768,650 - MPMX19_03384 0.54 +0.0
768,650 - MPMX19_03384 0.54 -2.1
768,650 - MPMX19_03384 0.54 +0.0
768,650 - MPMX19_03384 0.54 -0.7
768,650 - MPMX19_03384 0.54 -0.4
768,650 - MPMX19_03384 0.54 -1.2
768,727 + MPMX19_03384 0.64 +0.6
768,727 + MPMX19_03384 0.64 -1.6
768,727 + MPMX19_03384 0.64 -0.8
768,728 - MPMX19_03384 0.64 -1.6
768,998 + -1.7
768,998 + +1.6
768,998 + +0.1
768,999 - -0.2
768,999 - +0.6
769,013 + -0.4
769,013 + -1.4
769,013 + -1.8
769,014 - +0.6
769,014 - +2.4
769,014 - +0.2
769,169 - -0.6
769,219 + +1.0
769,220 - -1.2
769,220 - -0.3
769,221 + -1.6
769,222 - -2.6
769,229 - +0.0
769,305 + -1.5
769,305 + +0.1
769,575 + MPMX19_03385 0.32 +0.0
769,575 + MPMX19_03385 0.32 -2.1
769,575 + MPMX19_03385 0.32 +1.6
769,575 + MPMX19_03385 0.32 +0.0
769,575 + MPMX19_03385 0.32 -0.7
769,575 + MPMX19_03385 0.32 -0.4
769,576 - MPMX19_03385 0.32 -0.4
769,576 - MPMX19_03385 0.32 +1.9
769,576 - MPMX19_03385 0.32 -0.7
769,591 - MPMX19_03385 0.34 +0.6
769,591 - MPMX19_03385 0.34 -1.0
769,629 + MPMX19_03385 0.38 -0.7
769,854 + MPMX19_03385 0.63 -2.6
769,854 + MPMX19_03385 0.63 -1.1
769,854 + MPMX19_03385 0.63 -0.7
769,854 + MPMX19_03385 0.63 -0.4
769,854 + MPMX19_03385 0.63 -1.3
769,854 + MPMX19_03385 0.63 +0.9
769,854 + MPMX19_03385 0.63 -0.4
769,854 + MPMX19_03385 0.63 +0.1
769,854 + MPMX19_03385 0.63 -1.3
769,854 + MPMX19_03385 0.63 -1.3
769,854 + MPMX19_03385 0.63 +0.0
769,854 + MPMX19_03385 0.63 -0.4
769,854 + MPMX19_03385 0.63 +0.0
769,854 + MPMX19_03385 0.63 -0.7
769,855 - MPMX19_03385 0.63 -1.2
769,855 - MPMX19_03385 0.63 -0.4
769,855 - MPMX19_03385 0.63 -1.5
769,855 - MPMX19_03385 0.63 +0.6
769,855 - MPMX19_03385 0.63 -2.0
769,855 - MPMX19_03385 0.63 -0.4
769,855 - MPMX19_03385 0.63 -1.8
769,855 - MPMX19_03385 0.63 +0.0
769,855 - MPMX19_03385 0.63 -1.2
769,855 - MPMX19_03385 0.63 +0.3
769,855 - MPMX19_03385 0.63 -1.2
769,855 - MPMX19_03385 0.63 -1.2
769,855 - MPMX19_03385 0.63 -1.4
769,855 - MPMX19_03385 0.63 +0.2
769,855 - MPMX19_03385 0.63 -0.7
769,899 + MPMX19_03385 0.68 -1.2
769,899 + MPMX19_03385 0.68 +0.2
769,899 + MPMX19_03385 0.68 +0.3
769,900 - MPMX19_03385 0.68 -2.0
770,013 + MPMX19_03385 0.80 +1.0
770,013 + MPMX19_03385 0.80 -0.5
770,014 - MPMX19_03385 0.80 +1.6
770,014 - MPMX19_03385 0.80 +1.0
770,014 - MPMX19_03385 0.80 -0.7
770,160 + -0.4
770,160 + -0.7
770,161 - -1.5
770,161 - -1.0
770,161 - -0.1
770,229 + -2.3
770,229 + -0.7
770,229 + +1.6
770,229 + -0.4
770,229 + +0.6
770,229 + -0.2
770,229 + -0.7
770,230 - -1.4
770,230 - +0.6
770,230 - -1.0
770,230 - -1.5
770,230 - -1.8
770,230 - +0.6
770,230 - -0.5
770,230 - -0.1
770,240 + -1.4
770,241 - +0.6
770,241 - +1.0
770,488 + MPMX19_03386 0.17 -0.7
770,488 + MPMX19_03386 0.17 +0.3
770,489 - MPMX19_03386 0.18 -1.2
770,542 + MPMX19_03386 0.24 -1.1
770,542 + MPMX19_03386 0.24 +0.0
770,542 + MPMX19_03386 0.24 -0.9
770,542 + MPMX19_03386 0.24 -1.4
770,542 + MPMX19_03386 0.24 -0.4
770,542 + MPMX19_03386 0.24 +1.6
770,542 + MPMX19_03386 0.24 -1.2
770,542 + MPMX19_03386 0.24 +0.6
770,543 - MPMX19_03386 0.24 -0.5
770,543 - MPMX19_03386 0.24 -0.7
770,543 - MPMX19_03386 0.24 -0.4
770,543 - MPMX19_03386 0.24 -1.2
770,543 - MPMX19_03386 0.24 +0.0
770,543 - MPMX19_03386 0.24 -1.0
770,587 + MPMX19_03386 0.29 -1.0
770,587 + MPMX19_03386 0.29 -0.4
770,587 + MPMX19_03386 0.29 +1.6
770,587 + MPMX19_03386 0.29 -0.4
770,587 + MPMX19_03386 0.29 -1.0
770,587 + MPMX19_03386 0.29 -0.7
770,587 + MPMX19_03386 0.29 -0.4
770,587 + MPMX19_03386 0.29 +0.4
770,588 - MPMX19_03386 0.29 -1.0
770,588 - MPMX19_03386 0.29 -0.5
770,588 - MPMX19_03386 0.29 -2.1
770,588 - MPMX19_03386 0.29 -1.2
770,588 - MPMX19_03386 0.29 -0.4
770,588 - MPMX19_03386 0.29 -1.5
770,588 - MPMX19_03386 0.29 -1.0
770,683 + MPMX19_03386 0.40 -1.3
770,683 + MPMX19_03386 0.40 -1.0
770,684 - MPMX19_03386 0.40 -0.2
770,684 - MPMX19_03386 0.40 -0.7
770,684 - MPMX19_03386 0.40 -1.0
770,684 - MPMX19_03386 0.40 +0.0
770,684 - MPMX19_03386 0.40 +0.0
770,684 - MPMX19_03386 0.40 -1.8
770,725 + MPMX19_03386 0.45 -0.7
770,725 + MPMX19_03386 0.45 +1.2
770,725 + MPMX19_03386 0.45 -1.2
770,726 - MPMX19_03386 0.45 -0.2
770,726 - MPMX19_03386 0.45 -1.8
770,726 - MPMX19_03386 0.45 -0.7
770,726 - MPMX19_03386 0.45 -1.0
770,827 + MPMX19_03386 0.56 +0.4
770,827 + MPMX19_03386 0.56 -1.2
770,827 + MPMX19_03386 0.56 +0.2
770,827 + MPMX19_03386 0.56 -0.4
770,827 + MPMX19_03386 0.56 -2.1
770,828 - MPMX19_03386 0.56 -0.4
770,828 - MPMX19_03386 0.56 -0.4
770,828 - MPMX19_03386 0.56 -0.4
770,828 - MPMX19_03386 0.56 +0.6
770,983 - MPMX19_03386 0.74 -1.0
770,995 + MPMX19_03386 0.75 +0.9
770,995 + MPMX19_03386 0.75 -1.0
770,995 + MPMX19_03386 0.75 +0.0
770,996 - MPMX19_03386 0.75 -0.4
770,996 - MPMX19_03386 0.75 +0.0
770,996 - MPMX19_03386 0.75 -1.0
771,145 + -1.4
771,145 + -1.5

Or see this region's nucleotide sequence