Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03377

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03376 and MPMX19_03377 are separated by 148 nucleotidesMPMX19_03377 and MPMX19_03378 overlap by 4 nucleotides MPMX19_03376: MPMX19_03376 - hypothetical protein, at 754,697 to 760,675 _03376 MPMX19_03377: MPMX19_03377 - D-allose transport system permease protein AlsC, at 760,824 to 761,873 _03377 MPMX19_03378: MPMX19_03378 - Galactose/methyl galactoside import ATP-binding protein MglA, at 761,870 to 763,417 _03378 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 760.720 kb on + strandat 760.720 kb on + strandat 760.721 kb on - strandat 760.747 kb on + strandat 760.772 kb on - strandat 760.788 kb on + strandat 760.909 kb on + strandat 760.909 kb on + strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.663 kb on - strand, within MPMX19_03377at 762.111 kb on + strand, within MPMX19_03378at 762.111 kb on + strand, within MPMX19_03378at 762.112 kb on - strand, within MPMX19_03378at 762.112 kb on - strand, within MPMX19_03378at 762.112 kb on - strand, within MPMX19_03378at 762.112 kb on - strand, within MPMX19_03378at 762.112 kb on - strand, within MPMX19_03378at 762.163 kb on + strand, within MPMX19_03378at 762.163 kb on + strand, within MPMX19_03378at 762.164 kb on - strand, within MPMX19_03378at 762.164 kb on - strand, within MPMX19_03378at 762.164 kb on - strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.165 kb on + strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.166 kb on - strand, within MPMX19_03378at 762.174 kb on + strand, within MPMX19_03378at 762.174 kb on + strand, within MPMX19_03378at 762.175 kb on - strand, within MPMX19_03378at 762.175 kb on - strand, within MPMX19_03378at 762.252 kb on + strand, within MPMX19_03378at 762.252 kb on + strand, within MPMX19_03378at 762.252 kb on + strand, within MPMX19_03378at 762.252 kb on + strand, within MPMX19_03378at 762.252 kb on + strand, within MPMX19_03378at 762.253 kb on - strand, within MPMX19_03378at 762.253 kb on - strand, within MPMX19_03378at 762.253 kb on - strand, within MPMX19_03378at 762.253 kb on - strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.419 kb on + strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.420 kb on - strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.423 kb on + strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.424 kb on - strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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760,720 + -2.1
760,720 + +0.6
760,721 - -1.8
760,747 + -2.0
760,772 - +0.4
760,788 + -1.0
760,909 + +0.6
760,909 + -1.0
760,910 - -1.6
760,910 - +0.1
760,910 - -1.6
760,910 - -0.4
760,910 - -2.1
761,137 + MPMX19_03377 0.30 -2.3
761,137 + MPMX19_03377 0.30 +0.6
761,137 + MPMX19_03377 0.30 -0.4
761,137 + MPMX19_03377 0.30 -1.0
761,137 + MPMX19_03377 0.30 +0.6
761,137 + MPMX19_03377 0.30 +0.0
761,137 + MPMX19_03377 0.30 -0.4
761,137 + MPMX19_03377 0.30 +0.0
761,137 + MPMX19_03377 0.30 -2.0
761,137 + MPMX19_03377 0.30 -1.4
761,137 + MPMX19_03377 0.30 -1.4
761,137 + MPMX19_03377 0.30 -2.6
761,137 + MPMX19_03377 0.30 +0.2
761,138 - MPMX19_03377 0.30 -0.6
761,138 - MPMX19_03377 0.30 -0.8
761,138 - MPMX19_03377 0.30 -1.2
761,138 - MPMX19_03377 0.30 -0.4
761,138 - MPMX19_03377 0.30 -0.1
761,138 - MPMX19_03377 0.30 -0.8
761,138 - MPMX19_03377 0.30 -0.7
761,138 - MPMX19_03377 0.30 +0.6
761,138 - MPMX19_03377 0.30 +0.6
761,138 - MPMX19_03377 0.30 -1.0
761,138 - MPMX19_03377 0.30 -0.7
761,138 - MPMX19_03377 0.30 +0.0
761,209 + MPMX19_03377 0.37 -2.5
761,209 + MPMX19_03377 0.37 -1.2
761,209 + MPMX19_03377 0.37 -1.2
761,210 - MPMX19_03377 0.37 -1.0
761,210 - MPMX19_03377 0.37 -0.7
761,210 - MPMX19_03377 0.37 -1.4
761,210 - MPMX19_03377 0.37 -1.6
761,210 - MPMX19_03377 0.37 -0.4
761,210 - MPMX19_03377 0.37 -1.4
761,210 - MPMX19_03377 0.37 -1.2
761,662 + MPMX19_03377 0.80 -0.4
761,662 + MPMX19_03377 0.80 -1.7
761,662 + MPMX19_03377 0.80 +0.0
761,663 - MPMX19_03377 0.80 -1.8
762,111 + MPMX19_03378 0.16 +0.0
762,111 + MPMX19_03378 0.16 -1.4
762,112 - MPMX19_03378 0.16 -0.4
762,112 - MPMX19_03378 0.16 -0.3
762,112 - MPMX19_03378 0.16 -1.1
762,112 - MPMX19_03378 0.16 -1.1
762,112 - MPMX19_03378 0.16 -0.4
762,163 + MPMX19_03378 0.19 -0.6
762,163 + MPMX19_03378 0.19 +0.0
762,164 - MPMX19_03378 0.19 +0.0
762,164 - MPMX19_03378 0.19 -0.2
762,164 - MPMX19_03378 0.19 +0.6
762,165 + MPMX19_03378 0.19 -1.0
762,165 + MPMX19_03378 0.19 -1.0
762,165 + MPMX19_03378 0.19 -0.7
762,165 + MPMX19_03378 0.19 +0.9
762,165 + MPMX19_03378 0.19 +0.6
762,165 + MPMX19_03378 0.19 +0.0
762,165 + MPMX19_03378 0.19 -0.3
762,165 + MPMX19_03378 0.19 +1.3
762,165 + MPMX19_03378 0.19 +0.0
762,165 + MPMX19_03378 0.19 -1.2
762,165 + MPMX19_03378 0.19 -0.4
762,165 + MPMX19_03378 0.19 -0.5
762,165 + MPMX19_03378 0.19 -1.4
762,165 + MPMX19_03378 0.19 -2.1
762,165 + MPMX19_03378 0.19 +0.0
762,165 + MPMX19_03378 0.19 +0.1
762,165 + MPMX19_03378 0.19 -0.9
762,165 + MPMX19_03378 0.19 +0.0
762,165 + MPMX19_03378 0.19 -0.2
762,165 + MPMX19_03378 0.19 -1.0
762,165 + MPMX19_03378 0.19 +0.6
762,165 + MPMX19_03378 0.19 +0.1
762,165 + MPMX19_03378 0.19 +0.0
762,165 + MPMX19_03378 0.19 -1.7
762,165 + MPMX19_03378 0.19 -1.0
762,166 - MPMX19_03378 0.19 -1.6
762,166 - MPMX19_03378 0.19 -1.0
762,166 - MPMX19_03378 0.19 -1.4
762,166 - MPMX19_03378 0.19 +0.2
762,166 - MPMX19_03378 0.19 -0.4
762,166 - MPMX19_03378 0.19 -0.8
762,166 - MPMX19_03378 0.19 -0.2
762,166 - MPMX19_03378 0.19 -1.2
762,166 - MPMX19_03378 0.19 -1.8
762,166 - MPMX19_03378 0.19 -0.6
762,166 - MPMX19_03378 0.19 -0.7
762,166 - MPMX19_03378 0.19 -0.8
762,166 - MPMX19_03378 0.19 -2.7
762,166 - MPMX19_03378 0.19 +1.6
762,174 + MPMX19_03378 0.20 -0.9
762,174 + MPMX19_03378 0.20 +0.6
762,175 - MPMX19_03378 0.20 -1.2
762,175 - MPMX19_03378 0.20 -0.4
762,252 + MPMX19_03378 0.25 +0.0
762,252 + MPMX19_03378 0.25 +0.0
762,252 + MPMX19_03378 0.25 -1.4
762,252 + MPMX19_03378 0.25 +0.6
762,252 + MPMX19_03378 0.25 +0.6
762,253 - MPMX19_03378 0.25 -1.0
762,253 - MPMX19_03378 0.25 -0.4
762,253 - MPMX19_03378 0.25 +0.0
762,253 - MPMX19_03378 0.25 -0.1
762,419 + MPMX19_03378 0.35 +0.6
762,419 + MPMX19_03378 0.35 -0.8
762,419 + MPMX19_03378 0.35 -0.5
762,419 + MPMX19_03378 0.35 -0.4
762,419 + MPMX19_03378 0.35 -2.1
762,419 + MPMX19_03378 0.35 -1.6
762,419 + MPMX19_03378 0.35 +0.2
762,420 - MPMX19_03378 0.36 -0.5
762,420 - MPMX19_03378 0.36 +1.9
762,420 - MPMX19_03378 0.36 +0.8
762,420 - MPMX19_03378 0.36 -0.7
762,420 - MPMX19_03378 0.36 -1.8
762,420 - MPMX19_03378 0.36 -1.0
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 -0.1
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 -1.6
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 +1.0
762,423 + MPMX19_03378 0.36 -0.4
762,423 + MPMX19_03378 0.36 -1.4
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 -2.7
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 -0.7
762,423 + MPMX19_03378 0.36 -2.3
762,423 + MPMX19_03378 0.36 -1.3
762,423 + MPMX19_03378 0.36 +0.6
762,423 + MPMX19_03378 0.36 -1.0
762,423 + MPMX19_03378 0.36 -1.7
762,423 + MPMX19_03378 0.36 -1.0
762,424 - MPMX19_03378 0.36 +0.9
762,424 - MPMX19_03378 0.36 +0.4
762,424 - MPMX19_03378 0.36 -0.8
762,424 - MPMX19_03378 0.36 +0.0
762,424 - MPMX19_03378 0.36 -0.5
762,424 - MPMX19_03378 0.36 -0.1
762,424 - MPMX19_03378 0.36 +1.6
762,424 - MPMX19_03378 0.36 -0.7
762,424 - MPMX19_03378 0.36 -0.4
762,424 - MPMX19_03378 0.36 +1.0
762,424 - MPMX19_03378 0.36 -0.7
762,424 - MPMX19_03378 0.36 +1.4
762,424 - MPMX19_03378 0.36 -0.5
762,424 - MPMX19_03378 0.36 +0.6
762,424 - MPMX19_03378 0.36 -1.0
762,424 - MPMX19_03378 0.36 -0.4
762,424 - MPMX19_03378 0.36 -1.0
762,678 + MPMX19_03378 0.52 +1.0
762,678 + MPMX19_03378 0.52 -1.4
762,678 + MPMX19_03378 0.52 -0.3
762,678 + MPMX19_03378 0.52 +0.6
762,678 + MPMX19_03378 0.52 -2.5
762,828 + MPMX19_03378 0.62 -0.8
762,828 + MPMX19_03378 0.62 +0.0
762,828 + MPMX19_03378 0.62 -1.2
762,828 + MPMX19_03378 0.62 -1.7
762,828 + MPMX19_03378 0.62 +0.0
762,828 + MPMX19_03378 0.62 -2.5
762,828 + MPMX19_03378 0.62 -0.4
762,828 + MPMX19_03378 0.62 -1.2
762,829 - MPMX19_03378 0.62 +0.6
762,829 - MPMX19_03378 0.62 +0.9
762,829 - MPMX19_03378 0.62 -0.5
762,829 - MPMX19_03378 0.62 -1.0
762,829 - MPMX19_03378 0.62 -0.9
762,829 - MPMX19_03378 0.62 +1.0
762,829 - MPMX19_03378 0.62 -0.5
762,829 - MPMX19_03378 0.62 -1.0
762,829 - MPMX19_03378 0.62 +0.6
762,829 - MPMX19_03378 0.62 -1.2

Or see this region's nucleotide sequence