Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03351

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03350 and MPMX19_03351 are separated by 11 nucleotidesMPMX19_03351 and MPMX19_03352 are separated by 15 nucleotides MPMX19_03350: MPMX19_03350 - GTP 3',8-cyclase, at 708,663 to 710,096 _03350 MPMX19_03351: MPMX19_03351 - hypothetical protein, at 710,108 to 711,742 _03351 MPMX19_03352: MPMX19_03352 - hypothetical protein, at 711,758 to 713,119 _03352 Position (kb) 710 711 712Strain fitness (log2 ratio) -2 -1 0 1at 709.135 kb on + strand, within MPMX19_03350at 709.135 kb on + strand, within MPMX19_03350at 709.136 kb on - strand, within MPMX19_03350at 709.381 kb on + strand, within MPMX19_03350at 709.381 kb on + strand, within MPMX19_03350at 709.382 kb on - strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.568 kb on - strand, within MPMX19_03350at 709.568 kb on - strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.920 kb on - strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351at 711.213 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.384 kb on + strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.385 kb on - strand, within MPMX19_03351at 711.435 kb on + strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.436 kb on - strand, within MPMX19_03351at 711.626 kb on - strandat 711.747 kb on - strandat 711.747 kb on - strandat 711.759 kb on + strandat 712.190 kb on - strand, within MPMX19_03352at 712.224 kb on - strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.293 kb on + strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.294 kb on - strand, within MPMX19_03352at 712.521 kb on + strand, within MPMX19_03352at 712.623 kb on + strand, within MPMX19_03352at 712.623 kb on + strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.624 kb on - strand, within MPMX19_03352at 712.700 kb on + strand, within MPMX19_03352at 712.701 kb on - strand, within MPMX19_03352

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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709,135 + MPMX19_03350 0.33 +0.5
709,135 + MPMX19_03350 0.33 +0.8
709,136 - MPMX19_03350 0.33 +0.1
709,381 + MPMX19_03350 0.50 +1.6
709,381 + MPMX19_03350 0.50 -0.2
709,382 - MPMX19_03350 0.50 +1.6
709,567 + MPMX19_03350 0.63 -0.6
709,567 + MPMX19_03350 0.63 -0.7
709,567 + MPMX19_03350 0.63 +0.3
709,568 - MPMX19_03350 0.63 -0.4
709,568 - MPMX19_03350 0.63 -2.3
709,738 + MPMX19_03350 0.75 -0.4
709,738 + MPMX19_03350 0.75 +0.3
709,738 + MPMX19_03350 0.75 -0.7
709,738 + MPMX19_03350 0.75 -1.4
709,738 + MPMX19_03350 0.75 -0.7
709,738 + MPMX19_03350 0.75 -0.8
709,738 + MPMX19_03350 0.75 +0.6
709,738 + MPMX19_03350 0.75 -0.9
709,738 + MPMX19_03350 0.75 -0.4
709,738 + MPMX19_03350 0.75 -2.0
709,739 - MPMX19_03350 0.75 -0.0
709,739 - MPMX19_03350 0.75 +0.6
709,739 - MPMX19_03350 0.75 +0.3
709,739 - MPMX19_03350 0.75 -0.7
709,739 - MPMX19_03350 0.75 -0.4
709,739 - MPMX19_03350 0.75 -1.2
709,739 - MPMX19_03350 0.75 -1.5
709,739 - MPMX19_03350 0.75 +0.1
709,739 - MPMX19_03350 0.75 +0.1
709,739 - MPMX19_03350 0.75 +0.2
709,739 - MPMX19_03350 0.75 -1.0
709,739 - MPMX19_03350 0.75 -2.1
709,739 - MPMX19_03350 0.75 -0.9
709,744 + MPMX19_03350 0.75 -1.2
709,744 + MPMX19_03350 0.75 -2.6
709,744 + MPMX19_03350 0.75 -0.7
709,744 + MPMX19_03350 0.75 +0.3
709,744 + MPMX19_03350 0.75 -1.7
709,744 + MPMX19_03350 0.75 -2.2
709,744 + MPMX19_03350 0.75 -0.9
709,745 - MPMX19_03350 0.75 -0.7
709,745 - MPMX19_03350 0.75 -1.7
709,745 - MPMX19_03350 0.75 -1.4
709,745 - MPMX19_03350 0.75 -0.4
709,745 - MPMX19_03350 0.75 +0.1
710,529 + MPMX19_03351 0.26 +0.6
710,529 + MPMX19_03351 0.26 -0.8
710,529 + MPMX19_03351 0.26 +0.1
710,529 + MPMX19_03351 0.26 -1.4
710,529 + MPMX19_03351 0.26 +0.1
710,530 - MPMX19_03351 0.26 +1.6
710,530 - MPMX19_03351 0.26 +1.0
710,530 - MPMX19_03351 0.26 -0.7
710,530 - MPMX19_03351 0.26 +0.1
710,530 - MPMX19_03351 0.26 +0.6
710,530 - MPMX19_03351 0.26 -0.2
710,530 - MPMX19_03351 0.26 +1.2
710,530 - MPMX19_03351 0.26 -2.2
710,530 - MPMX19_03351 0.26 -0.4
710,530 - MPMX19_03351 0.26 -0.7
710,530 - MPMX19_03351 0.26 -0.7
710,920 - MPMX19_03351 0.50 +0.1
711,036 + MPMX19_03351 0.57 -0.2
711,036 + MPMX19_03351 0.57 -0.7
711,037 - MPMX19_03351 0.57 -0.7
711,037 - MPMX19_03351 0.57 -1.1
711,213 + MPMX19_03351 0.68 +0.1
711,384 + MPMX19_03351 0.78 -0.5
711,384 + MPMX19_03351 0.78 -0.9
711,384 + MPMX19_03351 0.78 +0.1
711,384 + MPMX19_03351 0.78 -0.8
711,384 + MPMX19_03351 0.78 +1.1
711,384 + MPMX19_03351 0.78 -1.4
711,384 + MPMX19_03351 0.78 +0.1
711,384 + MPMX19_03351 0.78 -1.4
711,384 + MPMX19_03351 0.78 +0.3
711,384 + MPMX19_03351 0.78 -0.0
711,384 + MPMX19_03351 0.78 -0.1
711,384 + MPMX19_03351 0.78 -0.7
711,384 + MPMX19_03351 0.78 -0.4
711,384 + MPMX19_03351 0.78 -0.9
711,384 + MPMX19_03351 0.78 -1.4
711,384 + MPMX19_03351 0.78 -0.4
711,385 - MPMX19_03351 0.78 -0.7
711,385 - MPMX19_03351 0.78 +1.6
711,385 - MPMX19_03351 0.78 -0.6
711,385 - MPMX19_03351 0.78 -0.9
711,385 - MPMX19_03351 0.78 -0.1
711,385 - MPMX19_03351 0.78 -0.9
711,385 - MPMX19_03351 0.78 -0.8
711,385 - MPMX19_03351 0.78 +1.6
711,385 - MPMX19_03351 0.78 -0.2
711,385 - MPMX19_03351 0.78 +0.9
711,435 + MPMX19_03351 0.81 -0.7
711,436 - MPMX19_03351 0.81 -0.2
711,436 - MPMX19_03351 0.81 -1.8
711,436 - MPMX19_03351 0.81 -0.9
711,436 - MPMX19_03351 0.81 +0.6
711,626 - -0.2
711,747 - -0.4
711,747 - -1.2
711,759 + -0.4
712,190 - MPMX19_03352 0.32 +0.1
712,224 - MPMX19_03352 0.34 -1.8
712,293 + MPMX19_03352 0.39 -0.7
712,293 + MPMX19_03352 0.39 +0.3
712,293 + MPMX19_03352 0.39 -0.8
712,294 - MPMX19_03352 0.39 +1.1
712,294 - MPMX19_03352 0.39 -1.9
712,294 - MPMX19_03352 0.39 +0.6
712,294 - MPMX19_03352 0.39 -0.4
712,294 - MPMX19_03352 0.39 -0.0
712,521 + MPMX19_03352 0.56 +0.6
712,623 + MPMX19_03352 0.64 -0.5
712,623 + MPMX19_03352 0.64 -0.4
712,624 - MPMX19_03352 0.64 +1.1
712,624 - MPMX19_03352 0.64 -0.7
712,624 - MPMX19_03352 0.64 -0.4
712,624 - MPMX19_03352 0.64 -0.2
712,624 - MPMX19_03352 0.64 -0.7
712,700 + MPMX19_03352 0.69 -0.2
712,701 - MPMX19_03352 0.69 +1.6

Or see this region's nucleotide sequence