Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03125 and MPMX19_03126 are separated by 20 nucleotides MPMX19_03126 and MPMX19_03127 overlap by 20 nucleotides MPMX19_03127 and MPMX19_03128 are separated by 59 nucleotides MPMX19_03128 and MPMX19_03129 are separated by 357 nucleotides
MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907
_03125
MPMX19_03126: MPMX19_03126 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 413,928 to 414,449
_03126
MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404
_03127
MPMX19_03128: MPMX19_03128 - hypothetical protein, at 415,464 to 416,042
_03128
MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761
_03129
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.452 kb on + strand, within MPMX19_03125 at 413.452 kb on + strand, within MPMX19_03125 at 413.452 kb on + strand, within MPMX19_03125 at 413.452 kb on + strand, within MPMX19_03125 at 413.453 kb on - strand, within MPMX19_03125 at 413.453 kb on - strand, within MPMX19_03125 at 413.453 kb on - strand, within MPMX19_03125 at 413.939 kb on - strand at 414.189 kb on + strand, within MPMX19_03126 at 414.189 kb on + strand, within MPMX19_03126 at 414.189 kb on + strand, within MPMX19_03126 at 414.189 kb on + strand, within MPMX19_03126 at 414.189 kb on + strand, within MPMX19_03126 at 414.190 kb on - strand, within MPMX19_03126 at 414.190 kb on - strand, within MPMX19_03126 at 414.190 kb on - strand, within MPMX19_03126 at 414.190 kb on - strand, within MPMX19_03126 at 414.190 kb on - strand, within MPMX19_03126 at 414.435 kb on + strand at 414.436 kb on - strand at 414.436 kb on - strand at 414.979 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 416.013 kb on - strand at 416.122 kb on + strand at 416.123 kb on - strand at 416.149 kb on + strand at 416.150 kb on - strand at 416.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 413,452 + MPMX19_03125 0.70 -0.4 413,452 + MPMX19_03125 0.70 -1.1 413,452 + MPMX19_03125 0.70 -1.6 413,452 + MPMX19_03125 0.70 -1.7 413,453 - MPMX19_03125 0.70 -0.4 413,453 - MPMX19_03125 0.70 +0.6 413,453 - MPMX19_03125 0.70 -0.6 413,939 - +0.3 414,189 + MPMX19_03126 0.50 -0.8 414,189 + MPMX19_03126 0.50 +0.0 414,189 + MPMX19_03126 0.50 -1.9 414,189 + MPMX19_03126 0.50 +0.0 414,189 + MPMX19_03126 0.50 +1.0 414,190 - MPMX19_03126 0.50 -0.4 414,190 - MPMX19_03126 0.50 -0.1 414,190 - MPMX19_03126 0.50 -1.2 414,190 - MPMX19_03126 0.50 -3.4 414,190 - MPMX19_03126 0.50 -1.0 414,435 + -0.4 414,436 - -1.0 414,436 - +0.1 414,979 + MPMX19_03127 0.56 -0.4 415,234 + MPMX19_03127 0.82 -1.2 415,234 + MPMX19_03127 0.82 +0.6 415,234 + MPMX19_03127 0.82 +0.6 415,235 - MPMX19_03127 0.83 -1.3 415,235 - MPMX19_03127 0.83 -0.7 415,235 - MPMX19_03127 0.83 -0.7 415,235 - MPMX19_03127 0.83 -1.2 415,533 + MPMX19_03128 0.12 -2.1 415,533 + MPMX19_03128 0.12 -0.3 415,533 + MPMX19_03128 0.12 -1.4 415,533 + MPMX19_03128 0.12 -1.2 415,533 + MPMX19_03128 0.12 -1.5 415,533 + MPMX19_03128 0.12 +0.3 415,533 + MPMX19_03128 0.12 +2.6 415,533 + MPMX19_03128 0.12 -2.1 415,533 + MPMX19_03128 0.12 +1.0 415,533 + MPMX19_03128 0.12 -0.7 415,534 - MPMX19_03128 0.12 +0.2 415,534 - MPMX19_03128 0.12 +0.3 415,534 - MPMX19_03128 0.12 -1.1 416,013 - -0.4 416,122 + -0.8 416,123 - -0.7 416,149 + -0.6 416,150 - -0.7 416,194 + +0.3
Or see this region's nucleotide sequence