Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03087

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03086 and MPMX19_03087 are separated by 112 nucleotidesMPMX19_03087 and MPMX19_03088 overlap by 4 nucleotidesMPMX19_03088 and MPMX19_03089 are separated by 284 nucleotides MPMX19_03086: MPMX19_03086 - Ferric-pseudobactin BN7/BN8 receptor, at 355,660 to 358,197 _03086 MPMX19_03087: MPMX19_03087 - Protein FecR, at 358,310 to 359,257 _03087 MPMX19_03088: MPMX19_03088 - putative RNA polymerase sigma factor FecI, at 359,254 to 359,760 _03088 MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253 _03089 Position (kb) 358 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.407 kb on + strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.408 kb on - strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.440 kb on + strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.441 kb on - strand, within MPMX19_03086at 357.467 kb on + strand, within MPMX19_03086at 357.468 kb on - strand, within MPMX19_03086at 357.468 kb on - strand, within MPMX19_03086at 357.662 kb on + strand, within MPMX19_03086at 357.663 kb on - strand, within MPMX19_03086at 357.663 kb on - strand, within MPMX19_03086at 357.724 kb on - strand, within MPMX19_03086at 357.929 kb on + strand, within MPMX19_03086at 357.929 kb on + strand, within MPMX19_03086at 357.930 kb on - strand, within MPMX19_03086at 358.202 kb on - strandat 358.311 kb on + strandat 358.312 kb on - strandat 358.598 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.712 kb on - strandat 359.806 kb on + strandat 359.807 kb on - strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.976 kb on + strandat 359.985 kb on - strandat 360.078 kb on + strandat 360.078 kb on + strandat 360.079 kb on - strandat 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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357,407 + MPMX19_03086 0.69 -1.9
357,407 + MPMX19_03086 0.69 -1.9
357,407 + MPMX19_03086 0.69 -0.4
357,407 + MPMX19_03086 0.69 -0.4
357,407 + MPMX19_03086 0.69 -0.7
357,407 + MPMX19_03086 0.69 +0.7
357,407 + MPMX19_03086 0.69 -0.9
357,408 - MPMX19_03086 0.69 -1.7
357,408 - MPMX19_03086 0.69 -1.6
357,408 - MPMX19_03086 0.69 -0.6
357,408 - MPMX19_03086 0.69 -1.0
357,408 - MPMX19_03086 0.69 +0.3
357,408 - MPMX19_03086 0.69 -2.7
357,408 - MPMX19_03086 0.69 -0.7
357,408 - MPMX19_03086 0.69 -0.7
357,440 + MPMX19_03086 0.70 +0.3
357,440 + MPMX19_03086 0.70 +0.0
357,440 + MPMX19_03086 0.70 -1.3
357,440 + MPMX19_03086 0.70 -3.1
357,440 + MPMX19_03086 0.70 -0.4
357,440 + MPMX19_03086 0.70 -0.4
357,440 + MPMX19_03086 0.70 -1.4
357,440 + MPMX19_03086 0.70 -0.7
357,441 - MPMX19_03086 0.70 -0.9
357,441 - MPMX19_03086 0.70 -2.2
357,441 - MPMX19_03086 0.70 +1.0
357,441 - MPMX19_03086 0.70 -0.1
357,441 - MPMX19_03086 0.70 -1.4
357,441 - MPMX19_03086 0.70 -1.0
357,441 - MPMX19_03086 0.70 +0.6
357,441 - MPMX19_03086 0.70 -1.3
357,441 - MPMX19_03086 0.70 -1.8
357,467 + MPMX19_03086 0.71 -0.8
357,468 - MPMX19_03086 0.71 +1.6
357,468 - MPMX19_03086 0.71 -0.3
357,662 + MPMX19_03086 0.79 +1.6
357,663 - MPMX19_03086 0.79 -0.7
357,663 - MPMX19_03086 0.79 -1.6
357,724 - MPMX19_03086 0.81 -1.1
357,929 + MPMX19_03086 0.89 -1.1
357,929 + MPMX19_03086 0.89 -0.2
357,930 - MPMX19_03086 0.89 -1.2
358,202 - -0.1
358,311 + -0.9
358,312 - -1.2
358,598 + MPMX19_03087 0.30 -0.4
358,599 + MPMX19_03087 0.30 +0.3
358,599 + MPMX19_03087 0.30 +0.3
358,599 + MPMX19_03087 0.30 +0.7
358,600 - MPMX19_03087 0.31 -2.0
358,600 - MPMX19_03087 0.31 -0.1
358,600 - MPMX19_03087 0.31 -0.4
358,600 - MPMX19_03087 0.31 +0.0
358,600 - MPMX19_03087 0.31 +0.1
358,600 - MPMX19_03087 0.31 +0.3
358,600 - MPMX19_03087 0.31 +0.6
358,600 - MPMX19_03087 0.31 -0.4
358,600 - MPMX19_03087 0.31 -1.2
359,582 + MPMX19_03088 0.65 -1.2
359,582 + MPMX19_03088 0.65 -0.2
359,582 + MPMX19_03088 0.65 -1.4
359,582 + MPMX19_03088 0.65 -1.0
359,582 + MPMX19_03088 0.65 +0.3
359,583 - MPMX19_03088 0.65 +0.3
359,583 - MPMX19_03088 0.65 +0.0
359,583 - MPMX19_03088 0.65 -0.4
359,583 - MPMX19_03088 0.65 -0.5
359,636 + MPMX19_03088 0.75 -0.7
359,636 + MPMX19_03088 0.75 +0.3
359,636 + MPMX19_03088 0.75 -0.7
359,636 + MPMX19_03088 0.75 -0.3
359,636 + MPMX19_03088 0.75 -0.3
359,636 + MPMX19_03088 0.75 -0.4
359,636 + MPMX19_03088 0.75 -1.6
359,636 + MPMX19_03088 0.75 -1.6
359,636 + MPMX19_03088 0.75 -1.1
359,637 - MPMX19_03088 0.76 -0.4
359,637 - MPMX19_03088 0.76 -2.0
359,637 - MPMX19_03088 0.76 -0.4
359,637 - MPMX19_03088 0.76 -1.0
359,637 - MPMX19_03088 0.76 -0.7
359,637 - MPMX19_03088 0.76 -0.4
359,637 - MPMX19_03088 0.76 -1.2
359,637 - MPMX19_03088 0.76 -0.2
359,637 - MPMX19_03088 0.76 -2.2
359,637 - MPMX19_03088 0.76 -0.6
359,711 + -1.0
359,711 + +0.3
359,711 + -0.4
359,711 + -1.2
359,711 + -2.1
359,711 + -0.9
359,712 - -1.2
359,806 + -1.8
359,807 - -0.4
359,905 + -0.1
359,905 + -1.0
359,905 + -0.7
359,905 + -0.2
359,905 + -1.9
359,905 + -0.7
359,905 + -1.9
359,905 + -1.2
359,905 + -0.3
359,906 - -1.0
359,906 - -0.5
359,906 - -1.6
359,906 - -0.4
359,906 - +1.3
359,906 - +0.6
359,906 - -0.2
359,976 + -0.2
359,985 - -0.7
360,078 + -1.9
360,078 + +0.3
360,079 - -0.7
360,188 + MPMX19_03089 0.12 -0.7
360,188 + MPMX19_03089 0.12 -1.3
360,188 + MPMX19_03089 0.12 +0.3
360,237 + MPMX19_03089 0.16 -1.0
360,237 + MPMX19_03089 0.16 -0.9
360,238 - MPMX19_03089 0.16 -1.2
360,238 - MPMX19_03089 0.16 -0.9
360,238 - MPMX19_03089 0.16 -1.3
360,238 - MPMX19_03089 0.16 -2.5
360,238 - MPMX19_03089 0.16 -1.7

Or see this region's nucleotide sequence