Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03013 and MPMX19_03014 are separated by 150 nucleotides MPMX19_03014 and MPMX19_03015 are separated by 140 nucleotides MPMX19_03015 and MPMX19_03016 are separated by 124 nucleotides
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
MPMX19_03014: MPMX19_03014 - Transcriptional activatory protein AadR, at 278,463 to 279,227
_03014
MPMX19_03015: MPMX19_03015 - Transcriptional regulatory protein TdiR, at 279,368 to 279,808
_03015
MPMX19_03016: MPMX19_03016 - Response regulator protein TmoT, at 279,933 to 280,631
_03016
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.294 kb on + strand at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 279.058 kb on + strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.176 kb on - strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.295 kb on - strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.348 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.359 kb on - strand at 279.359 kb on - strand at 279.359 kb on - strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.829 kb on - strand at 279.829 kb on - strand at 279.870 kb on + strand at 279.870 kb on + strand at 279.870 kb on + strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.893 kb on + strand at 279.893 kb on + strand at 279.894 kb on - strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 278,294 + +0.3 278,887 + MPMX19_03014 0.55 +2.2 278,887 + MPMX19_03014 0.55 -0.6 278,887 + MPMX19_03014 0.55 -0.7 278,887 + MPMX19_03014 0.55 +0.0 278,887 + MPMX19_03014 0.55 -1.6 278,887 + MPMX19_03014 0.55 -0.4 278,887 + MPMX19_03014 0.55 -0.7 278,887 + MPMX19_03014 0.55 -2.0 278,888 - MPMX19_03014 0.56 -0.6 278,888 - MPMX19_03014 0.56 -1.4 278,888 - MPMX19_03014 0.56 +0.9 278,888 - MPMX19_03014 0.56 +0.3 278,888 - MPMX19_03014 0.56 -0.5 278,888 - MPMX19_03014 0.56 -1.4 278,894 - MPMX19_03014 0.56 -0.4 278,894 - MPMX19_03014 0.56 -0.9 278,977 + MPMX19_03014 0.67 -0.2 278,977 + MPMX19_03014 0.67 -0.1 278,977 + MPMX19_03014 0.67 -1.1 278,978 - MPMX19_03014 0.67 -0.1 278,978 - MPMX19_03014 0.67 -0.6 278,978 - MPMX19_03014 0.67 -0.7 279,058 + MPMX19_03014 0.78 -1.0 279,059 - MPMX19_03014 0.78 -1.0 279,059 - MPMX19_03014 0.78 -1.9 279,059 - MPMX19_03014 0.78 -1.2 279,176 - -0.2 279,294 + +1.2 279,294 + -0.4 279,294 + -1.0 279,295 - +0.6 279,330 + +0.0 279,330 + -0.4 279,330 + +0.0 279,330 + -1.6 279,330 + -1.6 279,330 + -0.4 279,330 + +0.6 279,330 + -1.0 279,330 + +0.2 279,330 + -0.4 279,331 - -1.0 279,331 - -0.4 279,331 - +0.0 279,331 - -3.2 279,331 - -1.2 279,331 - -1.3 279,331 - +0.0 279,331 - +0.6 279,331 - -1.0 279,331 - -1.5 279,331 - -0.5 279,331 - +0.6 279,334 + -0.4 279,334 + +0.6 279,334 + +0.0 279,334 + -0.7 279,335 - +0.0 279,335 - -1.9 279,335 - -1.2 279,335 - -0.4 279,335 - +0.6 279,335 - -1.2 279,348 + -0.6 279,352 + +1.3 279,352 + -1.1 279,352 + +1.9 279,352 + -0.2 279,352 + +0.3 279,352 + +1.6 279,352 + -1.6 279,352 + -1.4 279,353 - -0.7 279,353 - -0.4 279,353 - +0.6 279,353 - -0.3 279,353 - -1.3 279,353 - -1.1 279,353 - -0.4 279,353 - -1.4 279,353 - +0.6 279,353 - -1.2 279,353 - -0.7 279,353 - -1.7 279,358 + +0.3 279,358 + +0.6 279,358 + -0.4 279,358 + -0.2 279,358 + -1.1 279,359 - -0.7 279,359 - -2.6 279,359 - +0.6 279,362 + -0.1 279,362 + -1.0 279,362 + +0.6 279,362 + +0.0 279,362 + -0.7 279,362 + -0.4 279,362 + -0.9 279,362 + +1.6 279,362 + -1.1 279,362 + +1.0 279,362 + -0.4 279,362 + +1.1 279,362 + -0.8 279,362 + +0.2 279,362 + -0.4 279,362 + +0.0 279,362 + -1.0 279,362 + -2.6 279,362 + -1.0 279,363 - +2.0 279,363 - +0.3 279,363 - -1.4 279,363 - -1.3 279,363 - +0.6 279,363 - +0.0 279,366 + -2.4 279,366 + -0.1 279,366 + -1.2 279,366 + +0.4 279,366 + -2.3 279,366 + -0.5 279,366 + -0.5 279,367 - +2.6 279,367 - -2.3 279,367 - +0.3 279,367 - -1.0 279,367 - -0.4 279,367 - -0.6 279,367 - -0.4 279,829 - -1.0 279,829 - -1.2 279,870 + -1.4 279,870 + +0.0 279,870 + -0.7 279,871 - +0.3 279,871 - -0.1 279,871 - +0.8 279,871 - -1.0 279,893 + -1.1 279,893 + +0.2 279,894 - -0.4 279,895 + +0.0 279,895 + -1.0 279,895 + -1.5 279,895 + +0.2 279,895 + -0.1 279,895 + -0.6 279,895 + +0.0 279,895 + +2.2 279,895 + +0.6 279,909 + +0.2
Or see this region's nucleotide sequence