Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02818 and MPMX19_02819 are separated by 3 nucleotides MPMX19_02819 and MPMX19_02820 are separated by 138 nucleotides
MPMX19_02818: MPMX19_02818 - hypothetical protein, at 54,507 to 55,979
_02818
MPMX19_02819: MPMX19_02819 - hypothetical protein, at 55,983 to 56,843
_02819
MPMX19_02820: MPMX19_02820 - HTH-type transcriptional regulator NorG, at 56,982 to 58,394
_02820
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.884 kb on + strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.978 kb on - strand at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.922 kb on + strand at 56.923 kb on - strand at 56.959 kb on - strand at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.406 kb on - strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.642 kb on + strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 55,317 + MPMX19_02818 0.55 +0.3 55,317 + MPMX19_02818 0.55 -0.4 55,317 + MPMX19_02818 0.55 -2.0 55,884 + -1.1 55,885 - -0.7 55,885 - -0.2 55,885 - -1.4 55,885 - -0.2 55,978 - -0.7 56,197 + MPMX19_02819 0.25 +1.8 56,197 + MPMX19_02819 0.25 +0.0 56,197 + MPMX19_02819 0.25 -1.2 56,197 + MPMX19_02819 0.25 -2.2 56,197 + MPMX19_02819 0.25 -0.3 56,198 - MPMX19_02819 0.25 -1.7 56,198 - MPMX19_02819 0.25 +0.0 56,198 - MPMX19_02819 0.25 -1.4 56,198 - MPMX19_02819 0.25 -1.4 56,198 - MPMX19_02819 0.25 -0.7 56,198 - MPMX19_02819 0.25 -1.0 56,198 - MPMX19_02819 0.25 -0.4 56,198 - MPMX19_02819 0.25 +0.4 56,198 - MPMX19_02819 0.25 -1.2 56,353 + MPMX19_02819 0.43 -1.6 56,353 + MPMX19_02819 0.43 -1.6 56,353 + MPMX19_02819 0.43 -1.2 56,353 + MPMX19_02819 0.43 +0.0 56,353 + MPMX19_02819 0.43 -0.5 56,922 + -1.1 56,923 - -1.7 56,959 - -0.3 57,132 + MPMX19_02820 0.11 -0.2 57,132 + MPMX19_02820 0.11 -1.1 57,132 + MPMX19_02820 0.11 +0.0 57,132 + MPMX19_02820 0.11 -0.9 57,132 + MPMX19_02820 0.11 +0.6 57,132 + MPMX19_02820 0.11 -1.2 57,133 - MPMX19_02820 0.11 +0.6 57,133 - MPMX19_02820 0.11 -1.0 57,133 - MPMX19_02820 0.11 -0.3 57,133 - MPMX19_02820 0.11 +0.0 57,133 - MPMX19_02820 0.11 -0.3 57,133 - MPMX19_02820 0.11 +0.9 57,186 + MPMX19_02820 0.14 -1.2 57,186 + MPMX19_02820 0.14 -1.0 57,186 + MPMX19_02820 0.14 -1.6 57,186 + MPMX19_02820 0.14 -0.5 57,186 + MPMX19_02820 0.14 -0.4 57,186 + MPMX19_02820 0.14 +1.6 57,186 + MPMX19_02820 0.14 +0.3 57,186 + MPMX19_02820 0.14 +0.6 57,186 + MPMX19_02820 0.14 -1.0 57,186 + MPMX19_02820 0.14 -0.4 57,186 + MPMX19_02820 0.14 -1.6 57,187 - MPMX19_02820 0.15 -0.4 57,187 - MPMX19_02820 0.15 +1.6 57,187 - MPMX19_02820 0.15 +0.0 57,187 - MPMX19_02820 0.15 +0.7 57,187 - MPMX19_02820 0.15 +0.6 57,187 - MPMX19_02820 0.15 -2.5 57,187 - MPMX19_02820 0.15 +0.3 57,187 - MPMX19_02820 0.15 -1.8 57,187 - MPMX19_02820 0.15 -1.9 57,187 - MPMX19_02820 0.15 -1.7 57,187 - MPMX19_02820 0.15 -1.0 57,406 - MPMX19_02820 0.30 -2.2 57,585 + MPMX19_02820 0.43 -0.4 57,585 + MPMX19_02820 0.43 +0.9 57,585 + MPMX19_02820 0.43 +0.6 57,585 + MPMX19_02820 0.43 -1.0 57,585 + MPMX19_02820 0.43 -2.3 57,586 - MPMX19_02820 0.43 -2.7 57,586 - MPMX19_02820 0.43 +0.2 57,586 - MPMX19_02820 0.43 -0.9 57,586 - MPMX19_02820 0.43 -1.0 57,586 - MPMX19_02820 0.43 -1.4 57,586 - MPMX19_02820 0.43 -1.7 57,642 + MPMX19_02820 0.47 -1.2 57,643 - MPMX19_02820 0.47 +0.6 57,643 - MPMX19_02820 0.47 +0.4 57,644 + MPMX19_02820 0.47 +0.0 57,644 + MPMX19_02820 0.47 -1.0 57,644 + MPMX19_02820 0.47 -1.1 57,644 + MPMX19_02820 0.47 -0.7 57,645 - MPMX19_02820 0.47 +0.0 57,645 - MPMX19_02820 0.47 +0.6 57,708 + MPMX19_02820 0.51 +0.6 57,708 + MPMX19_02820 0.51 -0.9 57,708 + MPMX19_02820 0.51 -1.4 57,708 + MPMX19_02820 0.51 -1.5 57,708 + MPMX19_02820 0.51 -1.2 57,708 + MPMX19_02820 0.51 +0.4 57,708 + MPMX19_02820 0.51 -0.4 57,708 + MPMX19_02820 0.51 -1.1 57,709 - MPMX19_02820 0.51 -0.8 57,709 - MPMX19_02820 0.51 +0.3 57,709 - MPMX19_02820 0.51 -0.4 57,709 - MPMX19_02820 0.51 +0.0
Or see this region's nucleotide sequence