Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02809

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02808 and MPMX19_02809 are separated by 275 nucleotidesMPMX19_02809 and MPMX19_02810 overlap by 4 nucleotides MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573 _02808 MPMX19_02809: MPMX19_02809 - D-erythronate kinase, at 44,849 to 46,048 _02809 MPMX19_02810: MPMX19_02810 - D-threonate 4-phosphate dehydrogenase, at 46,045 to 47,079 _02810 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.439 kb on + strand, within MPMX19_02808at 44.571 kb on + strandat 44.650 kb on + strandat 44.670 kb on + strandat 44.678 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 45.006 kb on - strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.147 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 46.340 kb on - strand, within MPMX19_02810at 46.439 kb on - strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.817 kb on - strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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44,439 + MPMX19_02808 0.83 +1.0
44,571 + +0.6
44,650 + +0.0
44,670 + -0.7
44,678 + -0.4
44,699 + -0.6
44,699 + -0.7
44,699 + -0.4
44,699 + -0.8
44,699 + -0.0
44,699 + -0.9
44,699 + +0.8
44,699 + -1.1
44,699 + +0.4
44,699 + -1.6
44,699 + +1.2
44,699 + -1.7
44,699 + -0.4
44,699 + -0.5
44,699 + -1.0
44,699 + -1.8
44,699 + -0.4
44,699 + -1.1
44,699 + -0.7
44,699 + -0.9
44,699 + +0.8
44,699 + -1.9
44,700 - -0.3
44,700 - +0.6
44,700 - -1.0
44,700 - +2.2
44,700 - +0.3
44,700 - +0.3
44,700 - +0.6
44,700 - +1.0
44,700 - -1.3
44,700 - -0.7
44,700 - -0.1
44,700 - -0.4
44,700 - +0.7
44,700 - -0.6
44,700 - +0.4
44,700 - +0.2
44,700 - -0.2
44,700 - -0.7
44,700 - +1.3
44,700 - -1.4
44,700 - +0.0
44,700 - +1.6
44,700 - -0.4
44,700 - +1.3
44,700 - +1.3
44,700 - +0.1
44,700 - -0.6
44,700 - +0.4
44,700 - +0.6
44,700 - -0.9
45,006 - MPMX19_02809 0.13 -1.0
45,040 + MPMX19_02809 0.16 -0.5
45,040 + MPMX19_02809 0.16 -0.7
45,040 + MPMX19_02809 0.16 -1.2
45,040 + MPMX19_02809 0.16 +1.2
45,041 - MPMX19_02809 0.16 -2.6
45,041 - MPMX19_02809 0.16 -0.4
45,041 - MPMX19_02809 0.16 -1.0
45,147 - MPMX19_02809 0.25 -1.2
45,230 - MPMX19_02809 0.32 +0.3
45,230 - MPMX19_02809 0.32 +0.9
45,230 - MPMX19_02809 0.32 -1.7
46,340 - MPMX19_02810 0.29 -2.2
46,439 - MPMX19_02810 0.38 -0.9
46,594 + MPMX19_02810 0.53 -2.0
46,594 + MPMX19_02810 0.53 +0.2
46,595 - MPMX19_02810 0.53 -0.7
46,595 - MPMX19_02810 0.53 -1.5
46,816 + MPMX19_02810 0.74 -1.0
46,816 + MPMX19_02810 0.74 -1.0
46,817 - MPMX19_02810 0.75 -2.5
46,837 + MPMX19_02810 0.77 -1.2
46,837 + MPMX19_02810 0.77 +0.6
46,837 + MPMX19_02810 0.77 -0.4
46,837 + MPMX19_02810 0.77 -0.1
46,837 + MPMX19_02810 0.77 -0.4
46,837 + MPMX19_02810 0.77 +0.0
46,837 + MPMX19_02810 0.77 +0.6
46,837 + MPMX19_02810 0.77 -0.1
46,837 + MPMX19_02810 0.77 +0.2
46,838 - MPMX19_02810 0.77 -1.0
46,838 - MPMX19_02810 0.77 -1.2
46,838 - MPMX19_02810 0.77 -0.7
46,838 - MPMX19_02810 0.77 -0.9
46,838 - MPMX19_02810 0.77 -1.2
46,838 - MPMX19_02810 0.77 -0.4
46,838 - MPMX19_02810 0.77 +0.0
46,838 - MPMX19_02810 0.77 +0.4
46,838 - MPMX19_02810 0.77 +0.2
46,838 - MPMX19_02810 0.77 +0.6
46,838 - MPMX19_02810 0.77 -1.6
46,838 - MPMX19_02810 0.77 +0.2
46,838 - MPMX19_02810 0.77 -2.1
46,838 - MPMX19_02810 0.77 +1.0
46,838 - MPMX19_02810 0.77 -3.2
46,838 - MPMX19_02810 0.77 +1.0
46,838 - MPMX19_02810 0.77 -1.4
47,035 + +0.6
47,035 + -1.2
47,035 + -0.4

Or see this region's nucleotide sequence