Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01305

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01304 and MPMX19_01305 are separated by 21 nucleotidesMPMX19_01305 and MPMX19_01306 are separated by 124 nucleotidesMPMX19_01306 and MPMX19_01307 are separated by 45 nucleotides MPMX19_01304: MPMX19_01304 - Phosphoribosylformylglycinamidine cyclo-ligase, at 1,361,363 to 1,362,424 _01304 MPMX19_01305: MPMX19_01305 - Phosphoribosylglycinamide formyltransferase, at 1,362,446 to 1,363,111 _01305 MPMX19_01306: MPMX19_01306 - hypothetical protein, at 1,363,236 to 1,363,379 _01306 MPMX19_01307: MPMX19_01307 - Valine--tRNA ligase, at 1,363,425 to 1,366,073 _01307 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1361.675 kb on + strand, within MPMX19_01304at 1361.675 kb on + strand, within MPMX19_01304at 1361.675 kb on + strand, within MPMX19_01304at 1361.675 kb on + strand, within MPMX19_01304at 1361.675 kb on + strand, within MPMX19_01304at 1361.676 kb on - strand, within MPMX19_01304at 1361.676 kb on - strand, within MPMX19_01304at 1361.676 kb on - strand, within MPMX19_01304at 1361.676 kb on - strand, within MPMX19_01304at 1361.676 kb on - strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.678 kb on + strand, within MPMX19_01304at 1361.679 kb on - strand, within MPMX19_01304at 1361.679 kb on - strand, within MPMX19_01304at 1361.679 kb on - strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.798 kb on + strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.799 kb on - strand, within MPMX19_01304at 1361.813 kb on + strand, within MPMX19_01304at 1361.813 kb on + strand, within MPMX19_01304at 1361.814 kb on - strand, within MPMX19_01304at 1361.814 kb on - strand, within MPMX19_01304at 1361.814 kb on - strand, within MPMX19_01304at 1361.814 kb on - strand, within MPMX19_01304at 1361.975 kb on + strand, within MPMX19_01304at 1361.976 kb on - strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.044 kb on + strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.045 kb on - strand, within MPMX19_01304at 1362.234 kb on - strand, within MPMX19_01304at 1362.234 kb on - strand, within MPMX19_01304at 1362.422 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.433 kb on + strandat 1362.434 kb on - strandat 1362.869 kb on + strand, within MPMX19_01305at 1362.869 kb on + strand, within MPMX19_01305at 1362.870 kb on - strand, within MPMX19_01305at 1362.870 kb on - strand, within MPMX19_01305at 1362.873 kb on + strand, within MPMX19_01305at 1362.874 kb on - strand, within MPMX19_01305at 1363.109 kb on + strandat 1363.110 kb on - strandat 1363.110 kb on - strandat 1363.110 kb on - strandat 1363.377 kb on + strandat 1363.377 kb on + strandat 1363.377 kb on + strandat 1363.378 kb on - strandat 1363.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,361,675 + MPMX19_01304 0.29 +0.3
1,361,675 + MPMX19_01304 0.29 +0.1
1,361,675 + MPMX19_01304 0.29 -0.4
1,361,675 + MPMX19_01304 0.29 +0.9
1,361,675 + MPMX19_01304 0.29 +1.6
1,361,676 - MPMX19_01304 0.29 +0.6
1,361,676 - MPMX19_01304 0.29 +0.1
1,361,676 - MPMX19_01304 0.29 -0.9
1,361,676 - MPMX19_01304 0.29 +1.1
1,361,676 - MPMX19_01304 0.29 +0.9
1,361,678 + MPMX19_01304 0.30 +1.6
1,361,678 + MPMX19_01304 0.30 +1.1
1,361,678 + MPMX19_01304 0.30 +0.6
1,361,678 + MPMX19_01304 0.30 +1.6
1,361,678 + MPMX19_01304 0.30 +0.6
1,361,678 + MPMX19_01304 0.30 -0.9
1,361,678 + MPMX19_01304 0.30 +0.6
1,361,679 - MPMX19_01304 0.30 +0.1
1,361,679 - MPMX19_01304 0.30 +2.4
1,361,679 - MPMX19_01304 0.30 +1.6
1,361,798 + MPMX19_01304 0.41 +0.6
1,361,798 + MPMX19_01304 0.41 +0.1
1,361,798 + MPMX19_01304 0.41 +2.0
1,361,798 + MPMX19_01304 0.41 +3.6
1,361,798 + MPMX19_01304 0.41 +0.2
1,361,798 + MPMX19_01304 0.41 +0.6
1,361,798 + MPMX19_01304 0.41 +1.6
1,361,798 + MPMX19_01304 0.41 +2.6
1,361,798 + MPMX19_01304 0.41 +1.1
1,361,798 + MPMX19_01304 0.41 -1.4
1,361,798 + MPMX19_01304 0.41 +0.6
1,361,799 - MPMX19_01304 0.41 +0.3
1,361,799 - MPMX19_01304 0.41 +0.6
1,361,799 - MPMX19_01304 0.41 -0.4
1,361,799 - MPMX19_01304 0.41 -0.4
1,361,799 - MPMX19_01304 0.41 +1.6
1,361,799 - MPMX19_01304 0.41 +0.1
1,361,799 - MPMX19_01304 0.41 +1.2
1,361,799 - MPMX19_01304 0.41 +0.1
1,361,799 - MPMX19_01304 0.41 -0.5
1,361,799 - MPMX19_01304 0.41 -0.9
1,361,799 - MPMX19_01304 0.41 +0.6
1,361,799 - MPMX19_01304 0.41 +1.6
1,361,799 - MPMX19_01304 0.41 -0.7
1,361,813 + MPMX19_01304 0.42 +1.1
1,361,813 + MPMX19_01304 0.42 +0.6
1,361,814 - MPMX19_01304 0.42 +2.6
1,361,814 - MPMX19_01304 0.42 +2.1
1,361,814 - MPMX19_01304 0.42 +2.6
1,361,814 - MPMX19_01304 0.42 +0.1
1,361,975 + MPMX19_01304 0.58 +0.1
1,361,976 - MPMX19_01304 0.58 +2.2
1,362,044 + MPMX19_01304 0.64 +1.6
1,362,044 + MPMX19_01304 0.64 +0.1
1,362,044 + MPMX19_01304 0.64 +1.6
1,362,044 + MPMX19_01304 0.64 +3.2
1,362,044 + MPMX19_01304 0.64 +1.6
1,362,044 + MPMX19_01304 0.64 -1.2
1,362,044 + MPMX19_01304 0.64 +3.2
1,362,044 + MPMX19_01304 0.64 -0.3
1,362,044 + MPMX19_01304 0.64 +0.9
1,362,044 + MPMX19_01304 0.64 +0.3
1,362,044 + MPMX19_01304 0.64 +0.6
1,362,045 - MPMX19_01304 0.64 +0.6
1,362,045 - MPMX19_01304 0.64 -0.7
1,362,045 - MPMX19_01304 0.64 -0.9
1,362,045 - MPMX19_01304 0.64 -0.4
1,362,045 - MPMX19_01304 0.64 -0.4
1,362,045 - MPMX19_01304 0.64 +1.6
1,362,045 - MPMX19_01304 0.64 +3.6
1,362,045 - MPMX19_01304 0.64 +1.6
1,362,045 - MPMX19_01304 0.64 -1.1
1,362,045 - MPMX19_01304 0.64 +1.6
1,362,045 - MPMX19_01304 0.64 +1.6
1,362,045 - MPMX19_01304 0.64 -0.4
1,362,045 - MPMX19_01304 0.64 +1.1
1,362,045 - MPMX19_01304 0.64 +1.6
1,362,234 - MPMX19_01304 0.82 +0.1
1,362,234 - MPMX19_01304 0.82 +2.1
1,362,422 + +0.3
1,362,433 + -1.4
1,362,433 + +0.3
1,362,433 + -1.4
1,362,433 + -0.9
1,362,433 + -0.7
1,362,434 - +3.2
1,362,869 + MPMX19_01305 0.64 -0.7
1,362,869 + MPMX19_01305 0.64 +0.1
1,362,870 - MPMX19_01305 0.64 +2.1
1,362,870 - MPMX19_01305 0.64 -0.7
1,362,873 + MPMX19_01305 0.64 +1.6
1,362,874 - MPMX19_01305 0.64 -0.4
1,363,109 + -2.1
1,363,110 - +0.3
1,363,110 - -0.2
1,363,110 - +0.2
1,363,377 + +2.2
1,363,377 + -0.9
1,363,377 + -0.7
1,363,378 - +2.2
1,363,378 - -0.9

Or see this region's nucleotide sequence