Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01022 and MPMX19_01023 overlap by 4 nucleotides MPMX19_01023 and MPMX19_01024 overlap by 4 nucleotides MPMX19_01024 and MPMX19_01025 are separated by 4 nucleotides
MPMX19_01022: MPMX19_01022 - hypothetical protein, at 1,060,779 to 1,061,240
_01022
MPMX19_01023: MPMX19_01023 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 1,061,237 to 1,061,776
_01023
MPMX19_01024: MPMX19_01024 - Corrinoid adenosyltransferase, at 1,061,773 to 1,062,396
_01024
MPMX19_01025: MPMX19_01025 - Cobyric acid synthase, at 1,062,401 to 1,063,879
_01025
Position (kb)
1061
1062
1063 Strain fitness (log2 ratio)
-2
-1
0
1 at 1060.839 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1060.995 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.130 kb on + strand, within MPMX19_01022 at 1061.172 kb on + strand, within MPMX19_01022 at 1061.172 kb on + strand, within MPMX19_01022 at 1061.208 kb on + strand at 1061.208 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1061.772 kb on + strand at 1062.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,060,839 + MPMX19_01022 0.13 -0.9 1,060,995 + MPMX19_01022 0.47 +0.5 1,060,995 + MPMX19_01022 0.47 -0.2 1,060,995 + MPMX19_01022 0.47 -0.5 1,060,995 + MPMX19_01022 0.47 +0.7 1,060,995 + MPMX19_01022 0.47 -1.4 1,060,995 + MPMX19_01022 0.47 -0.1 1,060,995 + MPMX19_01022 0.47 +0.8 1,060,995 + MPMX19_01022 0.47 -0.3 1,060,995 + MPMX19_01022 0.47 -0.9 1,060,995 + MPMX19_01022 0.47 +1.1 1,060,995 + MPMX19_01022 0.47 -0.7 1,060,995 + MPMX19_01022 0.47 -0.7 1,060,995 + MPMX19_01022 0.47 -0.8 1,060,995 + MPMX19_01022 0.47 -0.9 1,060,995 + MPMX19_01022 0.47 -0.8 1,061,130 + MPMX19_01022 0.76 +0.7 1,061,130 + MPMX19_01022 0.76 +0.9 1,061,130 + MPMX19_01022 0.76 -0.7 1,061,130 + MPMX19_01022 0.76 -0.7 1,061,130 + MPMX19_01022 0.76 -0.7 1,061,130 + MPMX19_01022 0.76 -0.5 1,061,130 + MPMX19_01022 0.76 -0.5 1,061,130 + MPMX19_01022 0.76 -0.9 1,061,172 + MPMX19_01022 0.85 -0.5 1,061,172 + MPMX19_01022 0.85 -0.3 1,061,208 + -0.7 1,061,208 + +0.7 1,061,772 + -0.7 1,061,772 + -1.2 1,061,772 + -1.3 1,061,772 + -1.2 1,061,772 + -0.5 1,061,772 + +0.8 1,061,772 + +0.3 1,061,772 + -0.6 1,061,772 + -0.7 1,061,772 + -0.9 1,061,772 + -1.9 1,061,772 + -1.3 1,061,772 + -0.7 1,061,772 + -1.0 1,062,417 + -1.8
Or see this region's nucleotide sequence