Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00809 and MPMX19_00810 are separated by 18 nucleotides MPMX19_00810 and MPMX19_00811 are separated by 130 nucleotides MPMX19_00811 and MPMX19_00812 are separated by 174 nucleotides
MPMX19_00809: MPMX19_00809 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 832,755 to 833,966
_00809
MPMX19_00810: MPMX19_00810 - hypothetical protein, at 833,985 to 834,302
_00810
MPMX19_00811: MPMX19_00811 - Divalent-cation tolerance protein CutA, at 834,433 to 834,777
_00811
MPMX19_00812: MPMX19_00812 - Molybdopterin molybdenumtransferase, at 834,952 to 836,190
_00812
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 833.727 kb on + strand, within MPMX19_00809 at 833.784 kb on + strand, within MPMX19_00809 at 833.784 kb on + strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.965 kb on - strand at 833.965 kb on - strand at 833.986 kb on + strand at 833.986 kb on + strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 834.385 kb on + strand at 834.385 kb on + strand at 834.385 kb on + strand at 834.386 kb on - strand at 834.386 kb on - strand at 834.386 kb on - strand at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.745 kb on + strand at 834.745 kb on + strand at 834.746 kb on - strand at 834.788 kb on + strand at 834.788 kb on + strand at 834.788 kb on + strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.796 kb on + strand at 834.796 kb on + strand at 834.796 kb on + strand at 834.797 kb on - strand at 834.797 kb on - strand at 834.797 kb on - strand at 834.848 kb on - strand at 834.848 kb on - strand at 835.024 kb on + strand at 835.024 kb on + strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.025 kb on - strand at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.567 kb on + strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.568 kb on - strand, within MPMX19_00812 at 835.582 kb on + strand, within MPMX19_00812 at 835.582 kb on + strand, within MPMX19_00812 at 835.582 kb on + strand, within MPMX19_00812 at 835.582 kb on + strand, within MPMX19_00812 at 835.582 kb on + strand, within MPMX19_00812 at 835.583 kb on - strand, within MPMX19_00812
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 833,727 + MPMX19_00809 0.80 -0.7 833,784 + MPMX19_00809 0.85 -1.5 833,784 + MPMX19_00809 0.85 -1.3 833,785 - MPMX19_00809 0.85 -1.8 833,785 - MPMX19_00809 0.85 -0.7 833,785 - MPMX19_00809 0.85 +0.4 833,964 + -1.8 833,964 + +1.2 833,964 + -2.3 833,964 + -1.2 833,964 + +0.3 833,964 + -1.9 833,964 + +0.2 833,965 - +0.6 833,965 - +0.3 833,986 + +1.2 833,986 + -0.4 833,987 - -0.4 833,987 - -0.9 833,987 - -0.4 833,987 - -2.1 833,987 - -1.4 833,987 - +0.3 834,385 + -1.2 834,385 + -1.2 834,385 + -0.5 834,386 - -0.5 834,386 - -0.7 834,386 - +0.4 834,481 + MPMX19_00811 0.14 -1.1 834,481 + MPMX19_00811 0.14 -1.1 834,481 + MPMX19_00811 0.14 -0.6 834,481 + MPMX19_00811 0.14 +0.9 834,481 + MPMX19_00811 0.14 -0.5 834,481 + MPMX19_00811 0.14 +0.6 834,481 + MPMX19_00811 0.14 +0.3 834,481 + MPMX19_00811 0.14 -0.4 834,481 + MPMX19_00811 0.14 -1.4 834,481 + MPMX19_00811 0.14 -1.5 834,482 - MPMX19_00811 0.14 -0.7 834,482 - MPMX19_00811 0.14 -0.9 834,482 - MPMX19_00811 0.14 +0.1 834,482 - MPMX19_00811 0.14 +0.1 834,482 - MPMX19_00811 0.14 -1.8 834,482 - MPMX19_00811 0.14 -0.4 834,482 - MPMX19_00811 0.14 -0.7 834,482 - MPMX19_00811 0.14 +0.6 834,482 - MPMX19_00811 0.14 -1.2 834,482 - MPMX19_00811 0.14 -0.6 834,482 - MPMX19_00811 0.14 -2.6 834,482 - MPMX19_00811 0.14 +0.1 834,482 - MPMX19_00811 0.14 -0.3 834,482 - MPMX19_00811 0.14 -2.8 834,482 - MPMX19_00811 0.14 -0.9 834,482 - MPMX19_00811 0.14 -0.1 834,482 - MPMX19_00811 0.14 -0.3 834,482 - MPMX19_00811 0.14 -1.4 834,483 + MPMX19_00811 0.14 +0.6 834,483 + MPMX19_00811 0.14 -1.7 834,483 + MPMX19_00811 0.14 +0.1 834,483 + MPMX19_00811 0.14 -0.5 834,483 + MPMX19_00811 0.14 -1.2 834,483 + MPMX19_00811 0.14 -0.9 834,483 + MPMX19_00811 0.14 +0.3 834,484 - MPMX19_00811 0.15 -1.5 834,484 - MPMX19_00811 0.15 +0.6 834,484 - MPMX19_00811 0.15 -0.1 834,484 - MPMX19_00811 0.15 -2.1 834,484 - MPMX19_00811 0.15 -1.9 834,484 - MPMX19_00811 0.15 -0.2 834,484 - MPMX19_00811 0.15 +0.1 834,484 - MPMX19_00811 0.15 -0.4 834,484 - MPMX19_00811 0.15 -0.4 834,484 - MPMX19_00811 0.15 +0.6 834,484 - MPMX19_00811 0.15 +0.6 834,484 - MPMX19_00811 0.15 -1.4 834,484 - MPMX19_00811 0.15 -1.4 834,484 - MPMX19_00811 0.15 -2.2 834,484 - MPMX19_00811 0.15 +0.1 834,484 - MPMX19_00811 0.15 -0.8 834,586 + MPMX19_00811 0.44 -0.7 834,586 + MPMX19_00811 0.44 +1.2 834,586 + MPMX19_00811 0.44 -0.7 834,587 - MPMX19_00811 0.45 +0.6 834,587 - MPMX19_00811 0.45 -2.4 834,587 - MPMX19_00811 0.45 -0.7 834,587 - MPMX19_00811 0.45 +0.1 834,587 - MPMX19_00811 0.45 -1.9 834,695 - MPMX19_00811 0.76 +0.6 834,695 - MPMX19_00811 0.76 -2.2 834,695 - MPMX19_00811 0.76 -0.2 834,695 - MPMX19_00811 0.76 -1.4 834,695 - MPMX19_00811 0.76 +0.6 834,745 + -0.2 834,745 + -0.8 834,746 - +1.6 834,788 + -1.2 834,788 + -0.7 834,788 + -2.4 834,789 - -0.7 834,789 - -0.2 834,789 - -0.4 834,789 - +1.6 834,789 - -0.7 834,789 - -1.7 834,789 - +0.5 834,796 + +0.3 834,796 + -0.4 834,796 + -0.3 834,797 - -0.2 834,797 - -1.8 834,797 - -1.5 834,848 - +0.1 834,848 - -1.1 835,024 + -0.4 835,024 + -0.9 835,025 - -1.1 835,025 - -1.4 835,025 - +0.3 835,025 - -0.2 835,025 - -2.0 835,025 - -0.1 835,025 - +1.6 835,025 - -1.9 835,567 + MPMX19_00812 0.50 +1.6 835,567 + MPMX19_00812 0.50 -1.5 835,567 + MPMX19_00812 0.50 -0.4 835,567 + MPMX19_00812 0.50 -0.2 835,567 + MPMX19_00812 0.50 -1.0 835,567 + MPMX19_00812 0.50 +0.4 835,567 + MPMX19_00812 0.50 -0.9 835,567 + MPMX19_00812 0.50 -1.2 835,567 + MPMX19_00812 0.50 +1.4 835,567 + MPMX19_00812 0.50 -1.9 835,567 + MPMX19_00812 0.50 -0.7 835,567 + MPMX19_00812 0.50 -1.2 835,567 + MPMX19_00812 0.50 +0.3 835,567 + MPMX19_00812 0.50 -0.7 835,567 + MPMX19_00812 0.50 +0.6 835,567 + MPMX19_00812 0.50 +0.6 835,567 + MPMX19_00812 0.50 -1.1 835,568 - MPMX19_00812 0.50 -1.0 835,568 - MPMX19_00812 0.50 +0.3 835,568 - MPMX19_00812 0.50 -0.9 835,568 - MPMX19_00812 0.50 +1.2 835,568 - MPMX19_00812 0.50 -0.4 835,568 - MPMX19_00812 0.50 -0.4 835,568 - MPMX19_00812 0.50 -0.5 835,568 - MPMX19_00812 0.50 -0.4 835,568 - MPMX19_00812 0.50 -2.1 835,568 - MPMX19_00812 0.50 +0.3 835,568 - MPMX19_00812 0.50 -1.9 835,568 - MPMX19_00812 0.50 +0.4 835,568 - MPMX19_00812 0.50 -1.1 835,568 - MPMX19_00812 0.50 -0.9 835,568 - MPMX19_00812 0.50 -0.9 835,568 - MPMX19_00812 0.50 +0.1 835,568 - MPMX19_00812 0.50 -0.4 835,568 - MPMX19_00812 0.50 -1.8 835,568 - MPMX19_00812 0.50 -0.9 835,568 - MPMX19_00812 0.50 -0.7 835,582 + MPMX19_00812 0.51 -0.5 835,582 + MPMX19_00812 0.51 -0.9 835,582 + MPMX19_00812 0.51 -1.1 835,582 + MPMX19_00812 0.51 -0.1 835,582 + MPMX19_00812 0.51 -1.2 835,583 - MPMX19_00812 0.51 -1.5
Or see this region's nucleotide sequence