Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00776 and MPMX19_00777 are separated by 381 nucleotides MPMX19_00777 and MPMX19_00778 are separated by 112 nucleotides
MPMX19_00776: MPMX19_00776 - hypothetical protein, at 793,981 to 795,315
_00776
MPMX19_00777: MPMX19_00777 - hypothetical protein, at 795,697 to 796,341
_00777
MPMX19_00778: MPMX19_00778 - hypothetical protein, at 796,454 to 797,182
_00778
Position (kb) 795
796
797 Strain fitness (log2 ratio) -2
-1
0
1
2 at 794.829 kb on + strand, within MPMX19_00776 at 794.829 kb on + strand, within MPMX19_00776 at 794.829 kb on + strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.398 kb on + strand at 795.398 kb on + strand at 795.398 kb on + strand at 795.399 kb on - strand at 795.470 kb on + strand at 795.470 kb on + strand at 795.470 kb on + strand at 795.471 kb on - strand at 795.481 kb on + strand at 795.481 kb on + strand at 795.538 kb on - strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.545 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.601 kb on - strand at 795.601 kb on - strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.677 kb on + strand at 795.677 kb on + strand at 795.725 kb on + strand at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.956 kb on - strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 796.043 kb on - strand, within MPMX19_00777 at 796.043 kb on - strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.288 kb on + strand at 796.288 kb on + strand at 796.288 kb on + strand at 796.288 kb on + strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.339 kb on + strand at 796.339 kb on + strand at 796.339 kb on + strand at 796.340 kb on - strand at 796.340 kb on - strand at 796.340 kb on - strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.947 kb on - strand, within MPMX19_00778 at 796.947 kb on - strand, within MPMX19_00778 at 796.977 kb on + strand, within MPMX19_00778 at 796.978 kb on - strand, within MPMX19_00778 at 796.978 kb on - strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.239 kb on - strand at 797.303 kb on + strand at 797.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 794,829 + MPMX19_00776 0.64 -1.2 794,829 + MPMX19_00776 0.64 -0.5 794,829 + MPMX19_00776 0.64 -0.5 794,830 - MPMX19_00776 0.64 -2.2 794,830 - MPMX19_00776 0.64 -2.3 794,830 - MPMX19_00776 0.64 -2.1 794,830 - MPMX19_00776 0.64 -1.2 794,830 - MPMX19_00776 0.64 +1.2 794,830 - MPMX19_00776 0.64 +0.6 795,386 + -0.5 795,386 + -2.6 795,386 + +0.4 795,386 + -1.0 795,386 + +1.0 795,386 + +0.0 795,386 + -0.2 795,387 - -1.0 795,387 - +0.5 795,387 - -1.0 795,387 - +0.9 795,398 + +2.4 795,398 + +0.0 795,398 + -0.2 795,399 - -0.5 795,470 + -0.6 795,470 + +0.0 795,470 + -0.4 795,471 - +0.6 795,481 + -1.7 795,481 + +0.6 795,538 - -0.4 795,539 + -2.5 795,539 + -2.1 795,539 + -0.4 795,539 + +0.0 795,539 + -2.7 795,539 + -0.4 795,540 - -0.3 795,540 - +0.5 795,540 - -0.5 795,540 - -0.2 795,540 - +1.0 795,540 - +0.3 795,545 + -0.4 795,600 + -0.4 795,600 + +1.0 795,600 + +0.6 795,600 + -0.5 795,600 + -0.5 795,601 - +0.5 795,601 - -0.7 795,609 + +0.6 795,609 + -0.4 795,609 + -1.2 795,609 + -0.2 795,609 + +0.0 795,609 + -1.5 795,609 + +0.4 795,609 + -0.7 795,609 + -1.1 795,609 + -1.4 795,609 + -1.5 795,609 + -0.2 795,609 + -1.0 795,609 + -2.2 795,609 + -1.7 795,610 - +0.5 795,610 - +0.5 795,610 - +0.6 795,610 - +1.6 795,610 - -0.4 795,610 - -1.4 795,610 - +0.5 795,610 - +0.6 795,610 - +1.4 795,610 - -0.7 795,610 - +0.6 795,610 - +0.4 795,610 - -0.1 795,610 - -0.7 795,610 - -0.1 795,610 - +0.0 795,610 - +1.5 795,610 - +0.3 795,610 - -1.2 795,612 + -0.2 795,612 + -0.7 795,612 + -0.4 795,612 + -0.4 795,612 + -0.7 795,612 + -0.7 795,612 + -1.3 795,613 - +1.0 795,613 - +1.0 795,613 - -0.0 795,613 - +0.3 795,613 - +1.6 795,613 - +0.1 795,613 - -0.8 795,613 - +0.0 795,661 + -0.4 795,661 + +0.0 795,661 + +0.0 795,661 + -1.5 795,661 + -0.4 795,661 + +0.6 795,661 + -1.5 795,661 + -0.2 795,661 + -0.4 795,661 + +0.6 795,661 + -0.4 795,661 + +0.6 795,661 + -1.0 795,661 + +0.4 795,661 + -2.4 795,661 + -1.0 795,662 - +1.6 795,662 - +0.3 795,662 - +1.0 795,662 - +0.2 795,662 - +0.4 795,662 - +1.4 795,662 - +0.9 795,662 - +1.4 795,662 - -1.8 795,662 - +0.3 795,662 - +1.6 795,662 - +0.3 795,662 - -1.1 795,662 - +0.0 795,662 - +0.4 795,662 - +0.4 795,662 - +0.6 795,662 - +1.0 795,677 + -0.4 795,677 + +1.0 795,725 + +1.2 795,955 + MPMX19_00777 0.40 -1.2 795,955 + MPMX19_00777 0.40 -1.2 795,955 + MPMX19_00777 0.40 +0.0 795,955 + MPMX19_00777 0.40 +0.0 795,955 + MPMX19_00777 0.40 -1.5 795,956 - MPMX19_00777 0.40 +1.0 795,973 + MPMX19_00777 0.43 -1.5 795,973 + MPMX19_00777 0.43 -1.4 795,973 + MPMX19_00777 0.43 -0.7 795,973 + MPMX19_00777 0.43 +0.3 795,973 + MPMX19_00777 0.43 -1.0 795,973 + MPMX19_00777 0.43 -1.4 795,973 + MPMX19_00777 0.43 +0.0 795,973 + MPMX19_00777 0.43 -0.7 795,974 - MPMX19_00777 0.43 +0.2 795,974 - MPMX19_00777 0.43 +1.3 795,974 - MPMX19_00777 0.43 +0.3 795,974 - MPMX19_00777 0.43 +0.8 795,974 - MPMX19_00777 0.43 +0.3 795,974 - MPMX19_00777 0.43 -1.0 796,043 - MPMX19_00777 0.54 +2.6 796,043 - MPMX19_00777 0.54 +0.6 796,186 + MPMX19_00777 0.76 -0.2 796,186 + MPMX19_00777 0.76 +0.9 796,186 + MPMX19_00777 0.76 -0.1 796,186 + MPMX19_00777 0.76 -1.7 796,186 + MPMX19_00777 0.76 +0.3 796,186 + MPMX19_00777 0.76 -2.0 796,186 + MPMX19_00777 0.76 -0.4 796,186 + MPMX19_00777 0.76 +1.1 796,186 + MPMX19_00777 0.76 +0.6 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 -1.5 796,186 + MPMX19_00777 0.76 +1.0 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 -0.9 796,186 + MPMX19_00777 0.76 +0.6 796,186 + MPMX19_00777 0.76 -1.0 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 -0.7 796,186 + MPMX19_00777 0.76 -1.5 796,186 + MPMX19_00777 0.76 +0.5 796,186 + MPMX19_00777 0.76 -1.0 796,186 + MPMX19_00777 0.76 -0.4 796,186 + MPMX19_00777 0.76 +0.6 796,187 - MPMX19_00777 0.76 +1.0 796,187 - MPMX19_00777 0.76 +1.5 796,187 - MPMX19_00777 0.76 +0.0 796,187 - MPMX19_00777 0.76 +0.3 796,187 - MPMX19_00777 0.76 -0.4 796,187 - MPMX19_00777 0.76 +0.5 796,288 + -0.7 796,288 + +0.6 796,288 + +0.7 796,288 + -0.2 796,289 - +0.3 796,289 - -0.4 796,289 - +0.5 796,289 - -0.5 796,339 + -2.1 796,339 + -1.0 796,339 + -0.4 796,340 - -1.1 796,340 - +0.6 796,340 - -0.4 796,369 + -0.2 796,369 + -0.4 796,369 + -1.2 796,369 + -2.1 796,370 - -0.5 796,370 - -0.4 796,370 - -2.3 796,370 - +0.4 796,926 + MPMX19_00778 0.65 +0.0 796,926 + MPMX19_00778 0.65 -0.8 796,926 + MPMX19_00778 0.65 -1.5 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 -0.4 796,926 + MPMX19_00778 0.65 -0.4 796,926 + MPMX19_00778 0.65 +0.0 796,926 + MPMX19_00778 0.65 +0.0 796,926 + MPMX19_00778 0.65 +0.3 796,926 + MPMX19_00778 0.65 +1.6 796,926 + MPMX19_00778 0.65 -1.2 796,926 + MPMX19_00778 0.65 -1.4 796,926 + MPMX19_00778 0.65 +0.4 796,926 + MPMX19_00778 0.65 -1.0 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 -0.8 796,926 + MPMX19_00778 0.65 -0.5 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 +0.9 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 -0.5 796,926 + MPMX19_00778 0.65 -0.4 796,926 + MPMX19_00778 0.65 -0.8 796,926 + MPMX19_00778 0.65 +0.8 796,927 - MPMX19_00778 0.65 -0.7 796,927 - MPMX19_00778 0.65 -0.7 796,927 - MPMX19_00778 0.65 +1.0 796,927 - MPMX19_00778 0.65 +0.0 796,927 - MPMX19_00778 0.65 -1.4 796,927 - MPMX19_00778 0.65 -0.2 796,927 - MPMX19_00778 0.65 -2.1 796,927 - MPMX19_00778 0.65 -0.3 796,927 - MPMX19_00778 0.65 +0.0 796,927 - MPMX19_00778 0.65 -0.5 796,927 - MPMX19_00778 0.65 -2.6 796,927 - MPMX19_00778 0.65 -1.4 796,927 - MPMX19_00778 0.65 -2.7 796,927 - MPMX19_00778 0.65 -1.7 796,927 - MPMX19_00778 0.65 -1.5 796,927 - MPMX19_00778 0.65 +0.3 796,927 - MPMX19_00778 0.65 -0.4 796,927 - MPMX19_00778 0.65 -0.5 796,947 - MPMX19_00778 0.68 +0.0 796,947 - MPMX19_00778 0.68 -0.4 796,977 + MPMX19_00778 0.72 +0.4 796,978 - MPMX19_00778 0.72 -0.1 796,978 - MPMX19_00778 0.72 +0.5 796,996 + MPMX19_00778 0.74 -1.4 796,996 + MPMX19_00778 0.74 +0.3 796,996 + MPMX19_00778 0.74 +0.3 796,996 + MPMX19_00778 0.74 -1.0 796,996 + MPMX19_00778 0.74 -0.5 796,996 + MPMX19_00778 0.74 -1.4 796,997 - MPMX19_00778 0.74 -1.0 796,997 - MPMX19_00778 0.74 -2.2 796,997 - MPMX19_00778 0.74 -1.4 796,997 - MPMX19_00778 0.74 -1.2 796,997 - MPMX19_00778 0.74 +0.6 796,997 - MPMX19_00778 0.74 +0.0 796,997 - MPMX19_00778 0.74 +1.0 796,997 - MPMX19_00778 0.74 -0.1 796,997 - MPMX19_00778 0.74 -1.1 796,997 - MPMX19_00778 0.74 +1.0 796,997 - MPMX19_00778 0.74 -1.7 796,997 - MPMX19_00778 0.74 -0.7 796,997 - MPMX19_00778 0.74 -0.4 797,016 + MPMX19_00778 0.77 -1.7 797,016 + MPMX19_00778 0.77 -0.2 797,016 + MPMX19_00778 0.77 +0.9 797,017 - MPMX19_00778 0.77 +0.0 797,017 - MPMX19_00778 0.77 -0.2 797,017 - MPMX19_00778 0.77 +0.6 797,017 - MPMX19_00778 0.77 -0.4 797,017 - MPMX19_00778 0.77 +0.0 797,239 - -1.3 797,303 + +1.1 797,303 + -1.2
Or see this region's nucleotide sequence