Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00717 and MPMX19_00718 are separated by 41 nucleotides MPMX19_00718 and MPMX19_00719 are separated by 374 nucleotides MPMX19_00719 and MPMX19_00720 are separated by 7 nucleotides
MPMX19_00717: MPMX19_00717 - hypothetical protein, at 740,479 to 741,300
_00717
MPMX19_00718: MPMX19_00718 - hypothetical protein, at 741,342 to 743,027
_00718
MPMX19_00719: MPMX19_00719 - Protein ElaA, at 743,402 to 743,884
_00719
MPMX19_00720: MPMX19_00720 - hypothetical protein, at 743,892 to 744,302
_00720
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.464 kb on - strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.218 kb on - strand at 741.218 kb on - strand at 741.218 kb on - strand at 742.417 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.777 kb on + strand, within MPMX19_00718 at 742.777 kb on + strand, within MPMX19_00718 at 742.814 kb on - strand, within MPMX19_00718 at 742.814 kb on - strand, within MPMX19_00718 at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.883 kb on - strand at 742.883 kb on - strand at 742.883 kb on - strand at 742.933 kb on + strand at 742.933 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.098 kb on + strand at 743.098 kb on + strand at 743.098 kb on + strand at 743.099 kb on - strand at 743.141 kb on + strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.177 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.182 kb on - strand at 743.203 kb on + strand at 743.204 kb on - strand at 743.207 kb on + strand at 743.207 kb on + strand at 743.214 kb on + strand at 743.215 kb on - strand at 743.215 kb on - strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.270 kb on - strand at 743.349 kb on + strand at 743.349 kb on + strand at 743.349 kb on + strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.449 kb on - strand at 743.449 kb on - strand at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.730 kb on + strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.767 kb on - strand, within MPMX19_00719 at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.026 kb on - strand, within MPMX19_00720
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 740,446 + -1.7 740,446 + -0.4 740,446 + -1.5 740,446 + +0.1 740,446 + +0.2 740,446 + -0.2 740,446 + -1.2 740,446 + -1.4 740,446 + +0.6 740,446 + -0.4 740,446 + -0.9 740,446 + +0.1 740,446 + -2.2 740,446 + -0.6 740,446 + +0.1 740,447 - +1.2 740,447 - +0.1 740,447 - +0.4 740,447 - +0.6 740,447 - -1.0 740,447 - +0.6 740,447 - +1.1 740,447 - -0.7 740,447 - -0.2 740,447 - -1.4 740,447 - +0.6 740,447 - -1.5 740,447 - -1.8 740,447 - -1.4 740,447 - -0.7 740,447 - +0.5 740,447 - -0.7 740,447 - +0.8 740,447 - -2.1 740,464 - -1.2 740,485 + +0.1 740,485 + -3.0 740,485 + -1.8 740,485 + -0.4 740,485 + +0.6 740,485 + -0.2 740,485 + +0.1 740,485 + +0.3 740,485 + -0.5 740,485 + -0.5 740,485 + -0.9 740,485 + +0.3 740,485 + -0.4 740,485 + -0.9 740,486 - -0.7 740,486 - -0.2 740,486 - -1.4 740,486 - -1.5 740,486 - +0.6 740,486 - -0.4 740,486 - -0.5 740,486 - -0.9 740,486 - -0.5 740,486 - -1.2 740,486 - +0.9 740,486 - -1.7 740,486 - +0.6 740,486 - +0.9 740,486 - -0.2 740,743 + MPMX19_00717 0.32 -1.1 740,743 + MPMX19_00717 0.32 +0.1 740,743 + MPMX19_00717 0.32 -0.7 740,743 + MPMX19_00717 0.32 -0.7 740,744 - MPMX19_00717 0.32 -0.7 740,744 - MPMX19_00717 0.32 -0.9 740,744 - MPMX19_00717 0.32 -0.7 740,744 - MPMX19_00717 0.32 -0.6 740,744 - MPMX19_00717 0.32 -0.4 740,744 - MPMX19_00717 0.32 +0.6 740,809 + MPMX19_00717 0.40 -0.5 740,809 + MPMX19_00717 0.40 -0.7 740,809 + MPMX19_00717 0.40 +0.6 740,809 + MPMX19_00717 0.40 -0.7 740,809 + MPMX19_00717 0.40 -0.9 740,809 + MPMX19_00717 0.40 -1.2 740,809 + MPMX19_00717 0.40 +0.1 740,809 + MPMX19_00717 0.40 +0.1 740,809 + MPMX19_00717 0.40 -1.1 740,809 + MPMX19_00717 0.40 -0.7 740,810 - MPMX19_00717 0.40 -1.4 740,810 - MPMX19_00717 0.40 +1.1 740,810 - MPMX19_00717 0.40 -0.9 740,810 - MPMX19_00717 0.40 -1.4 740,899 + MPMX19_00717 0.51 -1.4 740,899 + MPMX19_00717 0.51 -0.7 740,900 - MPMX19_00717 0.51 -1.8 740,900 - MPMX19_00717 0.51 -0.7 740,900 - MPMX19_00717 0.51 +0.4 741,217 + MPMX19_00717 0.90 +0.9 741,217 + MPMX19_00717 0.90 -1.4 741,217 + MPMX19_00717 0.90 +2.4 741,217 + MPMX19_00717 0.90 -1.7 741,218 - +0.3 741,218 - -1.7 741,218 - +2.1 742,417 - MPMX19_00718 0.64 -0.7 742,463 - MPMX19_00718 0.66 +0.6 742,463 - MPMX19_00718 0.66 -0.8 742,463 - MPMX19_00718 0.66 +0.3 742,777 + MPMX19_00718 0.85 -1.1 742,777 + MPMX19_00718 0.85 -1.5 742,814 - MPMX19_00718 0.87 -0.7 742,814 - MPMX19_00718 0.87 +0.3 742,882 + -0.4 742,882 + +0.5 742,882 + -1.7 742,882 + +0.6 742,882 + -0.7 742,883 - -0.4 742,883 - +0.3 742,883 - -0.7 742,933 + -0.9 742,933 + -0.7 743,044 + -0.9 743,044 + -1.5 743,044 + -0.2 743,044 + +0.6 743,045 - -0.8 743,045 - -2.2 743,045 - -1.5 743,045 - +0.6 743,098 + -0.4 743,098 + -0.5 743,098 + +1.2 743,099 - -1.2 743,141 + -1.5 743,142 - -0.8 743,142 - -0.4 743,177 + -0.9 743,181 + +0.6 743,181 + -0.9 743,181 + -0.4 743,181 + -1.2 743,181 + -0.9 743,181 + -1.3 743,182 - -1.0 743,203 + +1.4 743,204 - +0.8 743,207 + -1.8 743,207 + +0.3 743,214 + -1.0 743,215 - +0.6 743,215 - -0.9 743,239 + +0.1 743,239 + -0.2 743,239 + -2.8 743,239 + -0.4 743,239 + -1.2 743,239 + -0.4 743,239 + -1.2 743,239 + +0.6 743,239 + -0.4 743,240 - -0.7 743,240 - +0.2 743,240 - +0.1 743,240 - -1.0 743,240 - +1.6 743,270 - -1.2 743,349 + +0.1 743,349 + +1.6 743,349 + -1.5 743,350 - -0.7 743,350 - -0.9 743,350 - +0.6 743,350 - -0.5 743,350 - -1.1 743,350 - -1.8 743,449 - -0.4 743,449 - +0.3 743,484 + MPMX19_00719 0.17 +0.1 743,484 + MPMX19_00719 0.17 -2.5 743,484 + MPMX19_00719 0.17 +0.4 743,484 + MPMX19_00719 0.17 -0.5 743,484 + MPMX19_00719 0.17 -1.3 743,484 - MPMX19_00719 0.17 -1.5 743,485 - MPMX19_00719 0.17 -1.2 743,485 - MPMX19_00719 0.17 +0.6 743,485 - MPMX19_00719 0.17 -1.9 743,485 - MPMX19_00719 0.17 -1.5 743,485 - MPMX19_00719 0.17 -0.8 743,485 - MPMX19_00719 0.17 -0.7 743,485 - MPMX19_00719 0.17 -2.1 743,485 - MPMX19_00719 0.17 -1.2 743,730 + MPMX19_00719 0.68 -0.7 743,731 - MPMX19_00719 0.68 -0.9 743,731 - MPMX19_00719 0.68 -0.7 743,731 - MPMX19_00719 0.68 -1.7 743,731 - MPMX19_00719 0.68 -1.9 743,731 - MPMX19_00719 0.68 -1.7 743,731 - MPMX19_00719 0.68 -0.9 743,767 - MPMX19_00719 0.76 -0.7 743,917 + -2.3 743,917 + -0.1 743,917 + +0.3 743,917 + +0.6 743,917 + -1.2 743,917 + -0.5 743,917 + -0.4 743,917 + -0.3 743,917 + -0.9 743,917 + -1.2 743,917 + +1.1 743,917 + -1.5 743,917 + -0.4 743,917 + -2.0 743,917 + +0.1 743,917 + -0.1 743,917 + -2.4 743,917 + -1.7 743,918 - -1.5 743,918 - +0.6 743,918 - +0.1 743,918 - -0.6 743,918 - -0.8 743,918 - -1.5 743,918 - -1.4 743,918 - -0.4 743,918 - -1.2 743,918 - +0.2 743,918 - -2.1 743,918 - -1.8 743,918 - -1.5 743,918 - -0.8 743,918 - -1.4 743,918 - -1.2 743,918 - -0.1 743,918 - -1.1 743,918 - -1.2 743,918 - -1.1 743,918 - +0.1 743,918 - +0.1 743,918 - -0.3 743,918 - +0.1 743,918 - -0.2 743,918 - +0.6 743,918 - -2.7 743,918 - -1.5 743,918 - -0.6 743,918 - -1.8 743,918 - -0.7 743,918 - +0.2 743,918 - +0.1 743,918 - +0.3 743,918 - -0.9 744,025 + MPMX19_00720 0.32 -0.6 744,025 + MPMX19_00720 0.32 -1.1 744,025 + MPMX19_00720 0.32 +0.1 744,025 + MPMX19_00720 0.32 -0.4 744,026 - MPMX19_00720 0.33 -1.4
Or see this region's nucleotide sequence