Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00510 and MPMX19_00511 are separated by 85 nucleotides MPMX19_00511 and MPMX19_00512 are separated by 143 nucleotides MPMX19_00512 and MPMX19_00513 are separated by 254 nucleotides
MPMX19_00510: MPMX19_00510 - Sensor histidine kinase RcsC, at 513,666 to 514,433
_00510
MPMX19_00511: MPMX19_00511 - hypothetical protein, at 514,519 to 515,010
_00511
MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764
_00512
MPMX19_00513: MPMX19_00513 - Phosphotransferase RcsD, at 517,019 to 518,488
_00513
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.473 kb on + strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.543 kb on - strand at 514.667 kb on + strand, within MPMX19_00511 at 514.668 kb on - strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.764 kb on - strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.902 kb on - strand, within MPMX19_00511 at 515.042 kb on + strand at 515.042 kb on + strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.581 kb on - strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.974 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.412 kb on - strand, within MPMX19_00512 at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.790 kb on - strand at 516.790 kb on - strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.816 kb on - strand at 516.827 kb on + strand at 516.827 kb on + strand at 516.828 kb on - strand at 516.842 kb on - strand at 516.842 kb on - strand at 516.884 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.920 kb on - strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.990 kb on + strand at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 514,473 + -0.9 514,474 - -0.7 514,474 - -0.8 514,474 - -0.4 514,543 - -0.4 514,667 + MPMX19_00511 0.30 -0.7 514,668 - MPMX19_00511 0.30 -0.4 514,739 + MPMX19_00511 0.45 -0.4 514,739 + MPMX19_00511 0.45 -0.8 514,739 + MPMX19_00511 0.45 -1.8 514,739 + MPMX19_00511 0.45 +3.0 514,739 + MPMX19_00511 0.45 -0.1 514,739 + MPMX19_00511 0.45 -1.9 514,740 - MPMX19_00511 0.45 -2.3 514,740 - MPMX19_00511 0.45 -0.9 514,740 - MPMX19_00511 0.45 +1.6 514,740 - MPMX19_00511 0.45 -0.4 514,740 - MPMX19_00511 0.45 +0.6 514,763 + MPMX19_00511 0.50 +0.3 514,763 + MPMX19_00511 0.50 -2.1 514,763 + MPMX19_00511 0.50 +0.1 514,764 - MPMX19_00511 0.50 -0.8 514,901 + MPMX19_00511 0.78 +1.1 514,901 + MPMX19_00511 0.78 -0.1 514,902 - MPMX19_00511 0.78 -0.4 515,042 + +0.1 515,042 + -0.7 515,043 - +0.1 515,043 - -1.2 515,043 - -0.7 515,043 - -0.9 515,127 + -0.9 515,127 + -0.5 515,127 + +1.2 515,127 + -0.9 515,127 + -1.2 515,127 + -0.6 515,127 + +0.1 515,127 + -1.2 515,128 - +0.4 515,128 - -0.0 515,128 - -1.2 515,128 - -0.9 515,581 - MPMX19_00512 0.27 -1.7 515,773 + MPMX19_00512 0.38 +1.2 515,773 + MPMX19_00512 0.38 -0.6 515,773 + MPMX19_00512 0.38 +0.2 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 +2.0 515,773 + MPMX19_00512 0.38 -0.2 515,773 + MPMX19_00512 0.38 -0.2 515,773 + MPMX19_00512 0.38 +0.1 515,773 + MPMX19_00512 0.38 -0.9 515,773 + MPMX19_00512 0.38 -0.9 515,773 + MPMX19_00512 0.38 -0.2 515,773 + MPMX19_00512 0.38 -1.2 515,773 + MPMX19_00512 0.38 +0.1 515,773 + MPMX19_00512 0.38 -0.8 515,773 + MPMX19_00512 0.38 +1.6 515,773 + MPMX19_00512 0.38 +0.4 515,773 + MPMX19_00512 0.38 -0.4 515,773 + MPMX19_00512 0.38 +0.5 515,774 - MPMX19_00512 0.38 +0.1 515,774 - MPMX19_00512 0.38 +0.1 515,774 - MPMX19_00512 0.38 -0.4 515,774 - MPMX19_00512 0.38 -1.5 515,774 - MPMX19_00512 0.38 -0.7 515,774 - MPMX19_00512 0.38 +1.0 515,774 - MPMX19_00512 0.38 -0.9 515,774 - MPMX19_00512 0.38 -1.7 515,774 - MPMX19_00512 0.38 -2.4 515,774 - MPMX19_00512 0.38 -0.5 515,774 - MPMX19_00512 0.38 -0.4 515,774 - MPMX19_00512 0.38 -1.3 515,774 - MPMX19_00512 0.38 +1.6 515,774 - MPMX19_00512 0.38 -0.5 515,774 - MPMX19_00512 0.38 -1.4 515,774 - MPMX19_00512 0.38 -0.4 515,774 - MPMX19_00512 0.38 -1.9 515,774 - MPMX19_00512 0.38 -1.4 515,774 - MPMX19_00512 0.38 -0.9 515,774 - MPMX19_00512 0.38 -0.6 515,974 + MPMX19_00512 0.51 +0.3 515,998 + MPMX19_00512 0.52 -1.0 515,998 + MPMX19_00512 0.52 -0.4 515,998 + MPMX19_00512 0.52 -0.7 515,998 + MPMX19_00512 0.52 +0.6 515,998 + MPMX19_00512 0.52 -2.6 515,998 + MPMX19_00512 0.52 +0.8 515,999 - MPMX19_00512 0.52 +1.1 515,999 - MPMX19_00512 0.52 -1.7 515,999 - MPMX19_00512 0.52 +1.4 515,999 - MPMX19_00512 0.52 -0.1 515,999 - MPMX19_00512 0.52 +0.9 515,999 - MPMX19_00512 0.52 -0.5 515,999 - MPMX19_00512 0.52 -1.2 515,999 - MPMX19_00512 0.52 +1.6 515,999 - MPMX19_00512 0.52 -0.4 515,999 - MPMX19_00512 0.52 -1.8 515,999 - MPMX19_00512 0.52 -0.4 515,999 - MPMX19_00512 0.52 -1.4 516,009 + MPMX19_00512 0.53 -2.5 516,009 + MPMX19_00512 0.53 -1.4 516,009 + MPMX19_00512 0.53 +0.2 516,010 - MPMX19_00512 0.53 +0.4 516,010 - MPMX19_00512 0.53 -0.4 516,010 - MPMX19_00512 0.53 +0.1 516,010 - MPMX19_00512 0.53 -0.7 516,010 - MPMX19_00512 0.53 +0.8 516,375 + MPMX19_00512 0.76 +0.3 516,375 + MPMX19_00512 0.76 -0.5 516,376 - MPMX19_00512 0.76 -0.6 516,376 - MPMX19_00512 0.76 -3.3 516,376 - MPMX19_00512 0.76 -0.2 516,412 - MPMX19_00512 0.78 +0.3 516,783 + -1.0 516,783 + -0.1 516,783 + -0.7 516,783 + +0.5 516,784 - -1.4 516,784 - +0.6 516,784 - -1.2 516,790 - -0.5 516,790 - -0.9 516,815 + +0.6 516,815 + +0.9 516,815 + +1.1 516,815 + +0.6 516,816 - -1.1 516,827 + -0.2 516,827 + -1.8 516,828 - +1.1 516,842 - -1.3 516,842 - +0.3 516,884 + -0.4 516,919 + +1.6 516,919 + +0.6 516,919 + -1.8 516,920 - +0.9 516,977 + -0.7 516,977 + -0.7 516,977 + -0.7 516,977 + +0.1 516,977 + +0.2 516,977 + -0.8 516,977 + -0.4 516,977 + -1.5 516,977 + +0.4 516,977 + +1.2 516,977 + -0.4 516,977 + -0.9 516,977 + +0.9 516,977 + -0.9 516,977 - +0.2 516,978 - -1.1 516,978 - +0.5 516,978 - -0.7 516,978 - -1.2 516,978 - -1.2 516,978 - -0.0 516,984 + -0.7 516,984 + -1.2 516,984 + -1.4 516,984 + -0.5 516,984 + -0.9 516,984 + -0.8 516,985 - +0.2 516,985 - -0.4 516,985 - -1.5 516,985 - +0.3 516,985 - +0.1 516,985 - -0.9 516,985 - +0.1 516,985 - -1.5 516,985 - +0.1 516,985 - -0.2 516,985 - -0.4 516,985 - +0.3 516,990 + -0.9 517,251 + MPMX19_00513 0.16 -1.4 517,251 + MPMX19_00513 0.16 -2.5 517,251 + MPMX19_00513 0.16 -0.9 517,251 + MPMX19_00513 0.16 +0.3 517,251 + MPMX19_00513 0.16 -2.2 517,251 + MPMX19_00513 0.16 +1.6 517,251 + MPMX19_00513 0.16 -1.8 517,251 + MPMX19_00513 0.16 -0.5 517,251 + MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 -2.1 517,252 - MPMX19_00513 0.16 -0.5 517,252 - MPMX19_00513 0.16 -1.2 517,252 - MPMX19_00513 0.16 -0.8 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 -0.4 517,252 - MPMX19_00513 0.16 -0.8 517,252 - MPMX19_00513 0.16 -1.5 517,252 - MPMX19_00513 0.16 +0.3 517,252 - MPMX19_00513 0.16 -0.9 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 -0.5 517,252 - MPMX19_00513 0.16 +0.4 517,252 - MPMX19_00513 0.16 -0.4
Or see this region's nucleotide sequence