Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00160

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00159 and MPMX19_00160 overlap by 8 nucleotidesMPMX19_00160 and MPMX19_00161 are separated by 87 nucleotides MPMX19_00159: MPMX19_00159 - hypothetical protein, at 168,033 to 169,055 _00159 MPMX19_00160: MPMX19_00160 - hypothetical protein, at 169,048 to 169,248 _00160 MPMX19_00161: MPMX19_00161 - Putative prophage phiRv2 integrase, at 169,336 to 170,571 _00161 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 168.106 kb on + strandat 168.106 kb on + strandat 168.106 kb on + strandat 168.106 kb on + strandat 168.106 kb on + strandat 168.106 kb on + strandat 168.107 kb on - strandat 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.204 kb on + strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.205 kb on - strand, within MPMX19_00159at 168.561 kb on - strand, within MPMX19_00159at 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.009 kb on + strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.010 kb on - strandat 169.071 kb on - strand, within MPMX19_00160at 169.071 kb on - strand, within MPMX19_00160at 169.148 kb on + strand, within MPMX19_00160at 169.148 kb on + strand, within MPMX19_00160at 169.148 kb on + strand, within MPMX19_00160at 169.148 kb on + strand, within MPMX19_00160at 169.148 kb on + strand, within MPMX19_00160at 169.149 kb on - strand, within MPMX19_00160at 169.149 kb on - strand, within MPMX19_00160at 169.149 kb on - strand, within MPMX19_00160at 169.164 kb on + strand, within MPMX19_00160at 169.164 kb on + strand, within MPMX19_00160at 169.164 kb on + strand, within MPMX19_00160at 169.164 kb on + strand, within MPMX19_00160at 169.164 kb on + strand, within MPMX19_00160at 169.165 kb on - strand, within MPMX19_00160at 169.165 kb on - strand, within MPMX19_00160at 169.236 kb on + strandat 169.237 kb on - strandat 169.263 kb on - strandat 169.263 kb on - strandat 169.263 kb on - strandat 169.266 kb on + strandat 169.266 kb on + strandat 169.267 kb on - strandat 169.267 kb on - strandat 169.311 kb on + strandat 169.311 kb on + strandat 169.312 kb on - strandat 169.312 kb on - strandat 169.312 kb on - strandat 169.312 kb on - strandat 169.367 kb on - strandat 169.367 kb on - strandat 169.402 kb on + strandat 169.403 kb on - strandat 169.404 kb on + strandat 169.466 kb on - strand, within MPMX19_00161at 169.576 kb on + strand, within MPMX19_00161at 169.576 kb on + strand, within MPMX19_00161at 169.578 kb on + strand, within MPMX19_00161at 169.578 kb on + strand, within MPMX19_00161at 169.590 kb on + strand, within MPMX19_00161at 169.633 kb on - strand, within MPMX19_00161at 169.636 kb on + strand, within MPMX19_00161at 169.662 kb on + strand, within MPMX19_00161at 169.721 kb on + strand, within MPMX19_00161at 169.721 kb on + strand, within MPMX19_00161at 169.749 kb on + strand, within MPMX19_00161at 169.798 kb on - strand, within MPMX19_00161at 169.921 kb on + strand, within MPMX19_00161

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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168,106 + -2.9
168,106 + -1.9
168,106 + -1.3
168,106 + -0.0
168,106 + -2.0
168,106 + -1.1
168,107 - -2.3
168,204 + MPMX19_00159 0.17 -0.0
168,204 + MPMX19_00159 0.17 -0.3
168,204 + MPMX19_00159 0.17 -0.8
168,204 + MPMX19_00159 0.17 -2.5
168,204 + MPMX19_00159 0.17 -1.3
168,204 + MPMX19_00159 0.17 -0.8
168,204 + MPMX19_00159 0.17 -0.8
168,204 + MPMX19_00159 0.17 -0.3
168,204 + MPMX19_00159 0.17 +1.1
168,204 + MPMX19_00159 0.17 -1.6
168,204 + MPMX19_00159 0.17 -1.0
168,204 + MPMX19_00159 0.17 -0.4
168,204 + MPMX19_00159 0.17 -0.6
168,204 + MPMX19_00159 0.17 -1.2
168,205 - MPMX19_00159 0.17 -0.4
168,205 - MPMX19_00159 0.17 -1.0
168,205 - MPMX19_00159 0.17 +1.1
168,205 - MPMX19_00159 0.17 -0.4
168,205 - MPMX19_00159 0.17 -0.4
168,205 - MPMX19_00159 0.17 +0.4
168,205 - MPMX19_00159 0.17 +0.6
168,205 - MPMX19_00159 0.17 -0.0
168,205 - MPMX19_00159 0.17 -1.1
168,205 - MPMX19_00159 0.17 -1.3
168,205 - MPMX19_00159 0.17 +0.6
168,205 - MPMX19_00159 0.17 -0.4
168,205 - MPMX19_00159 0.17 -0.0
168,205 - MPMX19_00159 0.17 -0.8
168,205 - MPMX19_00159 0.17 -0.0
168,561 - MPMX19_00159 0.52 -3.1
169,009 + +0.6
169,009 + -1.0
169,009 + +0.9
169,009 + -1.3
169,009 + -0.8
169,009 + +0.4
169,009 + -0.4
169,009 + +0.6
169,009 + +1.6
169,009 + -1.4
169,009 + +1.6
169,010 - -1.1
169,010 - -0.9
169,010 - -1.3
169,010 - -1.3
169,010 - -0.1
169,010 - +0.7
169,010 - -1.1
169,010 - -0.4
169,010 - -0.2
169,010 - -0.8
169,071 - MPMX19_00160 0.11 +0.6
169,071 - MPMX19_00160 0.11 +1.1
169,148 + MPMX19_00160 0.50 +0.4
169,148 + MPMX19_00160 0.50 -1.0
169,148 + MPMX19_00160 0.50 -0.4
169,148 + MPMX19_00160 0.50 -0.8
169,148 + MPMX19_00160 0.50 +1.6
169,149 - MPMX19_00160 0.50 -0.4
169,149 - MPMX19_00160 0.50 -0.0
169,149 - MPMX19_00160 0.50 -0.0
169,164 + MPMX19_00160 0.58 -1.3
169,164 + MPMX19_00160 0.58 -1.7
169,164 + MPMX19_00160 0.58 -2.0
169,164 + MPMX19_00160 0.58 -0.1
169,164 + MPMX19_00160 0.58 -1.4
169,165 - MPMX19_00160 0.58 -0.2
169,165 - MPMX19_00160 0.58 +1.1
169,236 + -1.0
169,237 - -0.0
169,263 - +0.7
169,263 - -0.4
169,263 - +0.7
169,266 + -0.9
169,266 + -1.8
169,267 - -2.0
169,267 - +0.3
169,311 + -0.2
169,311 + +0.2
169,312 - -0.0
169,312 - -1.6
169,312 - -0.0
169,312 - -0.3
169,367 - +0.1
169,367 - -0.5
169,402 + -1.3
169,403 - -2.1
169,404 + +0.6
169,466 - MPMX19_00161 0.11 -0.3
169,576 + MPMX19_00161 0.19 -0.4
169,576 + MPMX19_00161 0.19 -2.3
169,578 + MPMX19_00161 0.20 -1.3
169,578 + MPMX19_00161 0.20 +0.3
169,590 + MPMX19_00161 0.21 -0.0
169,633 - MPMX19_00161 0.24 -1.8
169,636 + MPMX19_00161 0.24 -0.7
169,662 + MPMX19_00161 0.26 +1.1
169,721 + MPMX19_00161 0.31 -0.4
169,721 + MPMX19_00161 0.31 -0.4
169,749 + MPMX19_00161 0.33 -0.6
169,798 - MPMX19_00161 0.37 -1.4
169,921 + MPMX19_00161 0.47 -1.2

Or see this region's nucleotide sequence