Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06888 and MPMX19_06889 are separated by 9 nucleotides MPMX19_06889 and MPMX19_06890 overlap by 1 nucleotides
MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962
_06888
MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272
_06889
MPMX19_06890: MPMX19_06890 - hypothetical protein, at 164,272 to 165,309
_06890
Position (kb) 161
162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 162.168 kb on + strand at 162.168 kb on + strand at 162.169 kb on - strand at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 163.062 kb on + strand, within MPMX19_06889 at 163.062 kb on + strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.443 kb on + strand, within MPMX19_06889 at 163.443 kb on + strand, within MPMX19_06889 at 163.444 kb on - strand, within MPMX19_06889 at 163.444 kb on - strand, within MPMX19_06889 at 163.845 kb on + strand, within MPMX19_06889 at 163.866 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 164.230 kb on - strand at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.735 kb on + strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 161,681 + MPMX19_06888 0.81 -1.5 161,681 + MPMX19_06888 0.81 -0.3 161,681 + MPMX19_06888 0.81 -0.3 161,681 + MPMX19_06888 0.81 +0.7 161,681 + MPMX19_06888 0.81 -0.8 161,681 + MPMX19_06888 0.81 +0.1 161,682 - MPMX19_06888 0.81 +0.1 161,682 - MPMX19_06888 0.81 -0.6 161,682 - MPMX19_06888 0.81 -2.0 161,682 - MPMX19_06888 0.81 +0.1 161,682 - MPMX19_06888 0.81 -1.1 161,858 + -1.1 161,858 + +0.7 161,858 + +0.1 161,858 + -1.1 161,858 + -0.6 161,858 + +0.1 161,859 - +0.1 161,859 - +0.1 161,859 - -1.1 161,859 - -0.6 161,859 - -2.3 161,859 - -1.1 161,859 - -2.1 161,859 - -1.4 161,859 - -0.9 161,859 - -0.6 161,859 - -0.6 161,859 - +0.1 162,168 + +0.7 162,168 + -0.3 162,169 - -1.6 162,370 - MPMX19_06889 0.17 -0.8 162,370 - MPMX19_06889 0.17 -0.6 162,370 - MPMX19_06889 0.17 -0.1 162,370 - MPMX19_06889 0.17 -1.3 162,370 - MPMX19_06889 0.17 -0.9 162,370 - MPMX19_06889 0.17 -0.6 163,062 + MPMX19_06889 0.47 +0.1 163,062 + MPMX19_06889 0.47 -1.1 163,063 - MPMX19_06889 0.47 +0.0 163,063 - MPMX19_06889 0.47 -0.9 163,063 - MPMX19_06889 0.47 -0.5 163,443 + MPMX19_06889 0.64 +1.7 163,443 + MPMX19_06889 0.64 +0.1 163,444 - MPMX19_06889 0.64 -1.6 163,444 - MPMX19_06889 0.64 -1.1 163,845 + MPMX19_06889 0.81 -0.3 163,866 + MPMX19_06889 0.82 -1.0 163,941 + MPMX19_06889 0.86 -1.8 163,941 + MPMX19_06889 0.86 -1.6 163,941 + MPMX19_06889 0.86 -2.0 164,230 - -1.6 164,418 - MPMX19_06890 0.14 +0.1 164,418 - MPMX19_06890 0.14 -0.6 164,418 - MPMX19_06890 0.14 +0.7 164,418 - MPMX19_06890 0.14 +0.1 164,418 - MPMX19_06890 0.14 +1.0 164,577 - MPMX19_06890 0.29 -0.3 164,577 - MPMX19_06890 0.29 -0.9 164,577 - MPMX19_06890 0.29 -0.1 164,577 - MPMX19_06890 0.29 -1.9 164,577 - MPMX19_06890 0.29 -0.3 164,639 + MPMX19_06890 0.35 -0.3 164,639 + MPMX19_06890 0.35 -2.0 164,639 + MPMX19_06890 0.35 -0.3 164,639 + MPMX19_06890 0.35 -0.9 164,735 + MPMX19_06890 0.45 +0.7 164,904 - MPMX19_06890 0.61 -1.5 164,904 - MPMX19_06890 0.61 -0.3 164,904 - MPMX19_06890 0.61 -0.9 164,904 - MPMX19_06890 0.61 +0.0
Or see this region's nucleotide sequence