Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06800

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06798 and MPMX19_06799 are separated by 59 nucleotidesMPMX19_06799 and MPMX19_06800 overlap by 4 nucleotidesMPMX19_06800 and MPMX19_06801 are separated by 4 nucleotides MPMX19_06798: MPMX19_06798 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 63,306 to 64,154 _06798 MPMX19_06799: MPMX19_06799 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,214 to 64,954 _06799 MPMX19_06800: MPMX19_06800 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,951 to 65,619 _06800 MPMX19_06801: MPMX19_06801 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 65,624 to 66,955 _06801 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.105 kb on + strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.106 kb on - strandat 64.359 kb on + strand, within MPMX19_06799at 64.360 kb on - strand, within MPMX19_06799at 64.540 kb on - strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.542 kb on + strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.543 kb on - strand, within MPMX19_06799at 64.554 kb on + strand, within MPMX19_06799at 64.554 kb on + strand, within MPMX19_06799at 64.555 kb on - strand, within MPMX19_06799at 64.569 kb on + strand, within MPMX19_06799at 64.569 kb on + strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.570 kb on - strand, within MPMX19_06799at 64.605 kb on + strand, within MPMX19_06799at 64.606 kb on - strand, within MPMX19_06799at 64.668 kb on + strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.798 kb on - strand, within MPMX19_06799at 65.060 kb on - strand, within MPMX19_06800at 65.480 kb on + strand, within MPMX19_06800at 65.480 kb on + strand, within MPMX19_06800at 65.481 kb on - strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.522 kb on + strand, within MPMX19_06800at 65.522 kb on + strand, within MPMX19_06800at 65.588 kb on + strandat 65.588 kb on + strandat 65.589 kb on - strandat 65.589 kb on - strandat 65.772 kb on + strand, within MPMX19_06801at 65.772 kb on + strand, within MPMX19_06801at 65.772 kb on + strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.379 kb on - strand, within MPMX19_06801at 66.456 kb on + strand, within MPMX19_06801at 66.456 kb on + strand, within MPMX19_06801at 66.457 kb on - strand, within MPMX19_06801at 66.541 kb on - strand, within MPMX19_06801at 66.541 kb on - strand, within MPMX19_06801

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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64,105 + -0.9
64,105 + -0.5
64,105 + -0.9
64,105 + -0.7
64,105 + +0.3
64,106 - -1.0
64,106 - -0.1
64,106 - -2.0
64,106 - -0.6
64,106 - -0.2
64,106 - -0.3
64,359 + MPMX19_06799 0.20 -2.5
64,360 - MPMX19_06799 0.20 -0.6
64,540 - MPMX19_06799 0.44 +0.1
64,542 + MPMX19_06799 0.44 +0.4
64,542 + MPMX19_06799 0.44 -0.5
64,542 + MPMX19_06799 0.44 -1.0
64,542 + MPMX19_06799 0.44 -3.3
64,543 - MPMX19_06799 0.44 -0.6
64,543 - MPMX19_06799 0.44 +2.1
64,543 - MPMX19_06799 0.44 -0.3
64,543 - MPMX19_06799 0.44 -0.1
64,554 + MPMX19_06799 0.46 -1.2
64,554 + MPMX19_06799 0.46 -0.4
64,555 - MPMX19_06799 0.46 -0.6
64,569 + MPMX19_06799 0.48 -0.7
64,569 + MPMX19_06799 0.48 +1.7
64,570 - MPMX19_06799 0.48 -0.3
64,570 - MPMX19_06799 0.48 -0.6
64,570 - MPMX19_06799 0.48 -0.9
64,605 + MPMX19_06799 0.53 -0.8
64,606 - MPMX19_06799 0.53 -0.5
64,668 + MPMX19_06799 0.61 +1.2
64,669 - MPMX19_06799 0.61 +0.5
64,669 - MPMX19_06799 0.61 +0.7
64,669 - MPMX19_06799 0.61 +1.3
64,669 - MPMX19_06799 0.61 +0.1
64,797 + MPMX19_06799 0.79 +0.7
64,797 + MPMX19_06799 0.79 -0.3
64,797 + MPMX19_06799 0.79 -2.1
64,797 + MPMX19_06799 0.79 -0.9
64,797 + MPMX19_06799 0.79 +0.7
64,798 - MPMX19_06799 0.79 +0.2
65,060 - MPMX19_06800 0.16 +0.8
65,480 + MPMX19_06800 0.79 -0.5
65,480 + MPMX19_06800 0.79 -1.3
65,481 - MPMX19_06800 0.79 -0.6
65,492 + MPMX19_06800 0.81 -1.0
65,492 + MPMX19_06800 0.81 +0.4
65,492 + MPMX19_06800 0.81 -0.7
65,493 - MPMX19_06800 0.81 -0.1
65,493 - MPMX19_06800 0.81 -0.6
65,493 - MPMX19_06800 0.81 +0.1
65,522 + MPMX19_06800 0.85 -1.3
65,522 + MPMX19_06800 0.85 -0.9
65,588 + -0.6
65,588 + +0.7
65,589 - -0.1
65,589 - -2.2
65,772 + MPMX19_06801 0.11 +0.1
65,772 + MPMX19_06801 0.11 -1.3
65,772 + MPMX19_06801 0.11 +0.1
65,773 - MPMX19_06801 0.11 +0.1
65,773 - MPMX19_06801 0.11 -0.3
65,773 - MPMX19_06801 0.11 -1.1
65,961 + MPMX19_06801 0.25 -0.6
65,961 + MPMX19_06801 0.25 -0.3
65,961 + MPMX19_06801 0.25 +0.7
65,961 + MPMX19_06801 0.25 -0.8
65,961 + MPMX19_06801 0.25 -0.8
65,961 + MPMX19_06801 0.25 -0.4
65,961 + MPMX19_06801 0.25 -0.6
65,961 + MPMX19_06801 0.25 +0.3
65,961 + MPMX19_06801 0.25 -3.2
65,961 + MPMX19_06801 0.25 -1.1
65,961 + MPMX19_06801 0.25 +1.4
65,961 + MPMX19_06801 0.25 +0.1
65,961 + MPMX19_06801 0.25 -0.9
65,961 + MPMX19_06801 0.25 -2.3
65,962 - MPMX19_06801 0.25 -1.8
65,962 - MPMX19_06801 0.25 -2.1
65,962 - MPMX19_06801 0.25 -0.8
65,962 - MPMX19_06801 0.25 +1.0
65,962 - MPMX19_06801 0.25 -1.1
65,962 - MPMX19_06801 0.25 -0.5
65,962 - MPMX19_06801 0.25 -2.8
65,962 - MPMX19_06801 0.25 -0.5
65,962 - MPMX19_06801 0.25 +0.1
65,962 - MPMX19_06801 0.25 -0.1
66,234 + MPMX19_06801 0.46 -1.8
66,234 + MPMX19_06801 0.46 +1.7
66,234 + MPMX19_06801 0.46 -2.8
66,234 + MPMX19_06801 0.46 -0.3
66,234 + MPMX19_06801 0.46 -0.2
66,234 + MPMX19_06801 0.46 -0.3
66,234 + MPMX19_06801 0.46 +0.7
66,234 + MPMX19_06801 0.46 -2.7
66,234 + MPMX19_06801 0.46 -1.2
66,234 + MPMX19_06801 0.46 -1.5
66,234 + MPMX19_06801 0.46 -0.3
66,235 - MPMX19_06801 0.46 +0.3
66,235 - MPMX19_06801 0.46 -1.5
66,235 - MPMX19_06801 0.46 -1.1
66,235 - MPMX19_06801 0.46 +0.1
66,235 - MPMX19_06801 0.46 -0.3
66,235 - MPMX19_06801 0.46 -0.1
66,235 - MPMX19_06801 0.46 -0.9
66,235 - MPMX19_06801 0.46 +1.0
66,235 - MPMX19_06801 0.46 -1.8
66,235 - MPMX19_06801 0.46 +0.4
66,379 - MPMX19_06801 0.57 +1.0
66,456 + MPMX19_06801 0.62 -1.3
66,456 + MPMX19_06801 0.62 +0.1
66,457 - MPMX19_06801 0.63 +0.7
66,541 - MPMX19_06801 0.69 +0.7
66,541 - MPMX19_06801 0.69 +2.7

Or see this region's nucleotide sequence