Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06679

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06678 and MPMX19_06679 are separated by 64 nucleotidesMPMX19_06679 and MPMX19_06680 are separated by 136 nucleotides MPMX19_06678: MPMX19_06678 - hypothetical protein, at 243,256 to 244,239 _06678 MPMX19_06679: MPMX19_06679 - hypothetical protein, at 244,304 to 244,810 _06679 MPMX19_06680: MPMX19_06680 - hypothetical protein, at 244,947 to 251,504 _06680 Position (kb) 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.343 kb on + strandat 243.344 kb on - strandat 244.237 kb on + strandat 244.275 kb on - strandat 244.275 kb on - strandat 244.275 kb on - strandat 244.449 kb on + strand, within MPMX19_06679at 244.449 kb on + strand, within MPMX19_06679at 244.449 kb on + strand, within MPMX19_06679at 244.449 kb on + strand, within MPMX19_06679at 244.449 kb on + strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.450 kb on - strand, within MPMX19_06679at 244.708 kb on - strand, within MPMX19_06679at 244.708 kb on - strand, within MPMX19_06679at 244.708 kb on - strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.740 kb on + strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.741 kb on - strand, within MPMX19_06679at 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.831 kb on + strandat 244.832 kb on - strandat 244.832 kb on - strandat 244.832 kb on - strandat 244.832 kb on - strandat 244.957 kb on + strandat 244.957 kb on + strandat 244.957 kb on + strandat 244.957 kb on + strandat 244.957 kb on + strandat 244.957 kb on + strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.958 kb on - strandat 244.963 kb on + strandat 244.963 kb on + strandat 244.964 kb on - strandat 244.964 kb on - strandat 244.964 kb on - strandat 244.964 kb on - strandat 244.998 kb on + strandat 244.999 kb on - strandat 244.999 kb on - strandat 244.999 kb on - strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.044 kb on + strandat 245.045 kb on - strandat 245.045 kb on - strandat 245.045 kb on - strandat 245.071 kb on + strandat 245.072 kb on - strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.161 kb on + strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.162 kb on - strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.206 kb on + strandat 245.207 kb on - strandat 245.207 kb on - strandat 245.207 kb on - strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.416 kb on + strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.417 kb on - strandat 245.446 kb on + strandat 245.446 kb on + strandat 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.629 kb on + strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.630 kb on - strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.671 kb on + strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.672 kb on - strand, within MPMX19_06680at 245.724 kb on + strand, within MPMX19_06680at 245.725 kb on - strand, within MPMX19_06680at 245.729 kb on + strand, within MPMX19_06680at 245.729 kb on + strand, within MPMX19_06680at 245.729 kb on + strand, within MPMX19_06680at 245.730 kb on - strand, within MPMX19_06680at 245.730 kb on - strand, within MPMX19_06680at 245.735 kb on + strand, within MPMX19_06680

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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243,343 + -0.4
243,344 - -1.7
244,237 + -0.6
244,275 - -1.9
244,275 - -0.6
244,275 - -0.4
244,449 + MPMX19_06679 0.29 -0.1
244,449 + MPMX19_06679 0.29 -0.1
244,449 + MPMX19_06679 0.29 -1.3
244,449 + MPMX19_06679 0.29 -0.1
244,449 + MPMX19_06679 0.29 +0.2
244,450 - MPMX19_06679 0.29 -0.7
244,450 - MPMX19_06679 0.29 -1.2
244,450 - MPMX19_06679 0.29 -0.7
244,450 - MPMX19_06679 0.29 -0.1
244,450 - MPMX19_06679 0.29 +0.1
244,450 - MPMX19_06679 0.29 -1.6
244,450 - MPMX19_06679 0.29 +0.5
244,450 - MPMX19_06679 0.29 -1.9
244,450 - MPMX19_06679 0.29 +0.0
244,450 - MPMX19_06679 0.29 -2.5
244,450 - MPMX19_06679 0.29 +0.2
244,450 - MPMX19_06679 0.29 -1.6
244,450 - MPMX19_06679 0.29 +0.9
244,450 - MPMX19_06679 0.29 -0.8
244,450 - MPMX19_06679 0.29 -1.7
244,450 - MPMX19_06679 0.29 -0.1
244,708 - MPMX19_06679 0.80 -0.3
244,708 - MPMX19_06679 0.80 -0.4
244,708 - MPMX19_06679 0.80 -0.6
244,740 + MPMX19_06679 0.86 +0.4
244,740 + MPMX19_06679 0.86 -1.1
244,740 + MPMX19_06679 0.86 -0.9
244,740 + MPMX19_06679 0.86 +0.1
244,740 + MPMX19_06679 0.86 -0.2
244,740 + MPMX19_06679 0.86 -0.9
244,740 + MPMX19_06679 0.86 -1.1
244,740 + MPMX19_06679 0.86 -0.1
244,740 + MPMX19_06679 0.86 -0.2
244,740 + MPMX19_06679 0.86 +0.1
244,740 + MPMX19_06679 0.86 -0.6
244,740 + MPMX19_06679 0.86 -0.4
244,741 - MPMX19_06679 0.86 -1.9
244,741 - MPMX19_06679 0.86 -0.3
244,741 - MPMX19_06679 0.86 -0.1
244,741 - MPMX19_06679 0.86 -1.9
244,741 - MPMX19_06679 0.86 -0.1
244,741 - MPMX19_06679 0.86 -0.7
244,741 - MPMX19_06679 0.86 -1.1
244,741 - MPMX19_06679 0.86 -0.9
244,741 - MPMX19_06679 0.86 +0.1
244,741 - MPMX19_06679 0.86 -1.3
244,741 - MPMX19_06679 0.86 -2.6
244,741 - MPMX19_06679 0.86 -1.6
244,741 - MPMX19_06679 0.86 -1.6
244,741 - MPMX19_06679 0.86 +0.9
244,741 - MPMX19_06679 0.86 -1.8
244,741 - MPMX19_06679 0.86 -0.7
244,831 + -0.4
244,831 + -1.4
244,831 + +0.4
244,831 + -0.1
244,831 + -1.6
244,831 + +0.0
244,831 + +0.1
244,831 + -0.9
244,831 + -0.1
244,831 + -0.9
244,832 - -0.2
244,832 - +2.4
244,832 - -1.5
244,832 - -0.1
244,957 + +1.9
244,957 + +0.2
244,957 + +0.1
244,957 + -1.7
244,957 + -2.1
244,957 + -0.9
244,958 - +0.9
244,958 - -2.4
244,958 - +0.6
244,958 - -0.9
244,958 - +0.4
244,958 - +0.1
244,958 - +0.2
244,963 + -0.9
244,963 + -1.9
244,964 - +0.0
244,964 - -0.6
244,964 - +0.9
244,964 - -0.4
244,998 + -0.7
244,999 - -0.1
244,999 - -0.9
244,999 - +0.4
245,044 + -0.7
245,044 + +0.4
245,044 + -0.1
245,044 + +0.4
245,044 + -0.1
245,044 + -0.9
245,044 + +0.3
245,044 + -0.3
245,044 + -2.1
245,045 - -1.4
245,045 - -0.5
245,045 - +1.0
245,071 + +0.4
245,072 - -2.9
245,161 + +0.6
245,161 + -0.9
245,161 + -0.9
245,161 + -0.5
245,161 + -1.2
245,161 + -1.6
245,161 + -2.5
245,161 + -0.1
245,161 + +0.4
245,161 + -1.1
245,161 + +0.0
245,161 + -0.6
245,161 + -1.8
245,161 + +0.1
245,162 - -1.4
245,162 - -0.9
245,162 - -2.1
245,162 - +0.3
245,162 - -0.1
245,162 - -0.5
245,162 - +0.1
245,162 - -1.1
245,162 - +1.0
245,162 - +0.4
245,162 - -0.9
245,162 - -0.1
245,162 - -0.9
245,162 - -1.0
245,162 - -0.9
245,206 + -1.6
245,206 + -0.6
245,206 + +0.4
245,206 + -0.1
245,206 + -0.4
245,206 + -1.2
245,206 + -1.7
245,207 - +1.0
245,207 - -0.6
245,207 - +2.4
245,416 + -1.5
245,416 + +0.1
245,416 + -0.0
245,416 + +0.7
245,416 + -2.8
245,416 + +0.1
245,416 + -2.0
245,416 + -1.1
245,416 + +0.7
245,416 + -0.9
245,416 + -1.2
245,416 + -0.8
245,416 + -1.9
245,416 + -0.4
245,416 + -1.1
245,416 + -0.8
245,416 + -0.1
245,416 + -3.1
245,416 + -1.1
245,416 + +1.4
245,416 + -0.1
245,416 + +0.2
245,417 - -1.4
245,417 - -1.4
245,417 - -0.1
245,417 - -1.4
245,417 - -1.4
245,417 - -0.6
245,417 - +2.4
245,417 - -1.6
245,417 - -0.7
245,417 - +0.4
245,417 - -0.3
245,417 - -0.1
245,417 - -0.1
245,417 - -0.6
245,417 - -0.9
245,417 - +0.4
245,417 - -1.1
245,417 - -1.6
245,417 - +2.0
245,417 - +0.1
245,417 - -0.9
245,446 + -1.4
245,446 + -0.9
245,629 + MPMX19_06680 0.10 -0.7
245,629 + MPMX19_06680 0.10 -1.3
245,629 + MPMX19_06680 0.10 -1.7
245,629 + MPMX19_06680 0.10 -1.2
245,629 + MPMX19_06680 0.10 -2.3
245,629 + MPMX19_06680 0.10 -0.9
245,629 + MPMX19_06680 0.10 -1.8
245,630 - MPMX19_06680 0.10 +0.4
245,630 - MPMX19_06680 0.10 -0.9
245,630 - MPMX19_06680 0.10 +1.4
245,630 - MPMX19_06680 0.10 +0.4
245,630 - MPMX19_06680 0.10 -1.1
245,630 - MPMX19_06680 0.10 -0.6
245,630 - MPMX19_06680 0.10 -1.1
245,630 - MPMX19_06680 0.10 +0.1
245,630 - MPMX19_06680 0.10 -0.3
245,630 - MPMX19_06680 0.10 -0.6
245,630 - MPMX19_06680 0.10 -2.6
245,630 - MPMX19_06680 0.10 -0.6
245,630 - MPMX19_06680 0.10 -1.1
245,630 - MPMX19_06680 0.10 -0.9
245,630 - MPMX19_06680 0.10 -1.8
245,630 - MPMX19_06680 0.10 +0.4
245,671 + MPMX19_06680 0.11 -2.1
245,671 + MPMX19_06680 0.11 -2.0
245,671 + MPMX19_06680 0.11 +1.1
245,671 + MPMX19_06680 0.11 +0.6
245,671 + MPMX19_06680 0.11 -0.3
245,671 + MPMX19_06680 0.11 -0.7
245,671 + MPMX19_06680 0.11 +1.4
245,671 + MPMX19_06680 0.11 -2.3
245,671 + MPMX19_06680 0.11 -1.6
245,671 + MPMX19_06680 0.11 -2.1
245,671 + MPMX19_06680 0.11 +0.6
245,671 + MPMX19_06680 0.11 +0.2
245,671 + MPMX19_06680 0.11 -0.3
245,671 + MPMX19_06680 0.11 -0.8
245,671 + MPMX19_06680 0.11 -1.4
245,671 + MPMX19_06680 0.11 -0.1
245,671 + MPMX19_06680 0.11 -3.2
245,671 + MPMX19_06680 0.11 -0.2
245,671 + MPMX19_06680 0.11 -3.4
245,671 + MPMX19_06680 0.11 -1.4
245,671 + MPMX19_06680 0.11 -1.1
245,671 + MPMX19_06680 0.11 +0.1
245,671 + MPMX19_06680 0.11 +0.2
245,671 + MPMX19_06680 0.11 -0.5
245,671 + MPMX19_06680 0.11 +1.9
245,671 + MPMX19_06680 0.11 -1.9
245,671 + MPMX19_06680 0.11 -1.8
245,671 + MPMX19_06680 0.11 -0.7
245,671 + MPMX19_06680 0.11 -0.9
245,671 + MPMX19_06680 0.11 -1.4
245,671 + MPMX19_06680 0.11 -0.6
245,671 + MPMX19_06680 0.11 -0.1
245,672 - MPMX19_06680 0.11 -0.6
245,672 - MPMX19_06680 0.11 -0.8
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 +0.9
245,672 - MPMX19_06680 0.11 +0.9
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 -0.1
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 -0.6
245,672 - MPMX19_06680 0.11 +1.4
245,672 - MPMX19_06680 0.11 -0.1
245,672 - MPMX19_06680 0.11 +0.9
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 +1.0
245,672 - MPMX19_06680 0.11 -0.9
245,672 - MPMX19_06680 0.11 -0.9
245,672 - MPMX19_06680 0.11 -0.6
245,672 - MPMX19_06680 0.11 -0.3
245,672 - MPMX19_06680 0.11 +0.1
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 +0.1
245,672 - MPMX19_06680 0.11 -0.4
245,672 - MPMX19_06680 0.11 +0.9
245,672 - MPMX19_06680 0.11 -1.0
245,672 - MPMX19_06680 0.11 -0.1
245,672 - MPMX19_06680 0.11 +2.0
245,672 - MPMX19_06680 0.11 -0.6
245,672 - MPMX19_06680 0.11 +0.4
245,672 - MPMX19_06680 0.11 -0.7
245,724 + MPMX19_06680 0.12 +1.4
245,725 - MPMX19_06680 0.12 -0.0
245,729 + MPMX19_06680 0.12 -0.4
245,729 + MPMX19_06680 0.12 -1.4
245,729 + MPMX19_06680 0.12 -0.6
245,730 - MPMX19_06680 0.12 -1.7
245,730 - MPMX19_06680 0.12 +0.4
245,735 + MPMX19_06680 0.12 -0.6

Or see this region's nucleotide sequence