Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06124

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06123 and MPMX19_06124 are separated by 324 nucleotidesMPMX19_06124 and MPMX19_06125 are separated by 524 nucleotides MPMX19_06123: MPMX19_06123 - hypothetical protein, at 308,785 to 309,483 _06123 MPMX19_06124: MPMX19_06124 - Chloramphenicol acetyltransferase, at 309,808 to 310,443 _06124 MPMX19_06125: MPMX19_06125 - RNA helicase CrhR, at 310,968 to 312,248 _06125 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 308.849 kb on + strandat 308.849 kb on + strandat 309.272 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.275 kb on + strand, within MPMX19_06123at 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.634 kb on + strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.635 kb on - strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.638 kb on + strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.639 kb on - strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.665 kb on + strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.666 kb on - strandat 309.775 kb on + strandat 309.775 kb on + strandat 309.775 kb on + strandat 309.776 kb on - strandat 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.889 kb on + strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.890 kb on - strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.895 kb on + strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.896 kb on - strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.898 kb on + strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.899 kb on - strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.910 kb on + strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 309.911 kb on - strand, within MPMX19_06124at 310.117 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.252 kb on + strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.253 kb on - strand, within MPMX19_06124at 310.599 kb on - strandat 310.707 kb on - strandat 310.707 kb on - strandat 310.768 kb on + strandat 310.859 kb on + strandat 310.859 kb on + strandat 310.860 kb on - strandat 310.860 kb on - strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.949 kb on + strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.950 kb on - strandat 310.969 kb on + strandat 310.969 kb on + strandat 310.969 kb on + strandat 310.969 kb on + strandat 310.970 kb on - strandat 310.970 kb on - strandat 311.142 kb on - strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.245 kb on + strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125at 311.246 kb on - strand, within MPMX19_06125

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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308,849 + +0.8
308,849 + -1.0
309,272 + MPMX19_06123 0.70 -1.6
309,275 + MPMX19_06123 0.70 -1.0
309,275 + MPMX19_06123 0.70 -1.8
309,634 + +0.2
309,634 + -1.7
309,634 + -0.4
309,634 + +0.3
309,635 - -0.7
309,635 - -0.3
309,635 - -1.0
309,635 - -0.0
309,635 - -0.3
309,635 - +0.6
309,638 + -0.0
309,638 + -0.6
309,638 + +0.6
309,638 + -1.0
309,639 - -1.0
309,639 - +0.5
309,639 - -1.7
309,639 - -0.1
309,639 - +1.0
309,665 + -0.4
309,665 + +0.4
309,665 + -1.6
309,665 + -0.4
309,665 + -0.0
309,665 + -0.3
309,665 + -0.2
309,666 - -0.0
309,666 - +1.4
309,666 - -1.5
309,666 - +0.1
309,666 - -2.5
309,666 - +0.3
309,666 - +0.6
309,666 - +0.6
309,775 + -0.7
309,775 + +0.8
309,775 + -0.4
309,776 - -1.7
309,889 + MPMX19_06124 0.13 +0.6
309,889 + MPMX19_06124 0.13 -0.7
309,889 + MPMX19_06124 0.13 -0.1
309,889 + MPMX19_06124 0.13 -2.8
309,890 - MPMX19_06124 0.13 -0.4
309,890 - MPMX19_06124 0.13 -0.2
309,890 - MPMX19_06124 0.13 -0.4
309,890 - MPMX19_06124 0.13 -1.1
309,895 + MPMX19_06124 0.14 -0.3
309,895 + MPMX19_06124 0.14 -0.7
309,895 + MPMX19_06124 0.14 +0.6
309,895 + MPMX19_06124 0.14 +1.0
309,895 + MPMX19_06124 0.14 -1.2
309,896 - MPMX19_06124 0.14 +1.2
309,896 - MPMX19_06124 0.14 -0.4
309,896 - MPMX19_06124 0.14 +0.6
309,896 - MPMX19_06124 0.14 -0.4
309,896 - MPMX19_06124 0.14 +0.6
309,896 - MPMX19_06124 0.14 -2.5
309,896 - MPMX19_06124 0.14 -0.3
309,896 - MPMX19_06124 0.14 -2.2
309,898 + MPMX19_06124 0.14 -1.2
309,898 + MPMX19_06124 0.14 -0.4
309,898 + MPMX19_06124 0.14 -1.2
309,898 + MPMX19_06124 0.14 -2.0
309,899 - MPMX19_06124 0.14 -0.7
309,899 - MPMX19_06124 0.14 +0.1
309,899 - MPMX19_06124 0.14 -0.7
309,899 - MPMX19_06124 0.14 -0.4
309,910 + MPMX19_06124 0.16 -2.1
309,910 + MPMX19_06124 0.16 +1.2
309,910 + MPMX19_06124 0.16 -0.4
309,910 + MPMX19_06124 0.16 -0.6
309,910 + MPMX19_06124 0.16 -1.4
309,910 + MPMX19_06124 0.16 -1.4
309,910 + MPMX19_06124 0.16 +0.6
309,911 - MPMX19_06124 0.16 -0.9
309,911 - MPMX19_06124 0.16 +0.7
309,911 - MPMX19_06124 0.16 +1.6
309,911 - MPMX19_06124 0.16 -1.2
309,911 - MPMX19_06124 0.16 -1.6
309,911 - MPMX19_06124 0.16 -0.7
309,911 - MPMX19_06124 0.16 -0.4
309,911 - MPMX19_06124 0.16 -1.0
309,911 - MPMX19_06124 0.16 +1.6
310,117 + MPMX19_06124 0.49 -2.3
310,252 + MPMX19_06124 0.70 -0.7
310,252 + MPMX19_06124 0.70 -0.5
310,252 + MPMX19_06124 0.70 -1.6
310,252 + MPMX19_06124 0.70 -1.0
310,252 + MPMX19_06124 0.70 -0.4
310,252 + MPMX19_06124 0.70 +0.5
310,253 - MPMX19_06124 0.70 +1.6
310,253 - MPMX19_06124 0.70 +0.2
310,253 - MPMX19_06124 0.70 -0.0
310,253 - MPMX19_06124 0.70 -0.9
310,599 - +0.4
310,707 - +0.6
310,707 - -1.1
310,768 + -0.8
310,859 + -1.3
310,859 + +0.6
310,860 - -0.8
310,860 - -0.0
310,949 + +3.2
310,949 + -0.0
310,949 + -0.2
310,949 + +1.6
310,949 + -1.4
310,949 + -1.4
310,949 + -1.1
310,949 + -1.0
310,950 - -1.4
310,950 - -1.5
310,950 - +1.0
310,950 - +1.1
310,950 - -0.0
310,950 - +0.1
310,950 - -1.2
310,950 - +0.6
310,950 - +0.4
310,969 + -0.7
310,969 + -1.6
310,969 + +0.6
310,969 + -0.0
310,970 - -1.0
310,970 - +0.5
311,142 - MPMX19_06125 0.14 +1.3
311,245 + MPMX19_06125 0.22 -0.4
311,245 + MPMX19_06125 0.22 -0.0
311,245 + MPMX19_06125 0.22 +1.6
311,245 + MPMX19_06125 0.22 -1.4
311,245 + MPMX19_06125 0.22 -1.4
311,245 + MPMX19_06125 0.22 -1.0
311,245 + MPMX19_06125 0.22 +0.7
311,245 + MPMX19_06125 0.22 -1.5
311,245 + MPMX19_06125 0.22 -0.7
311,245 + MPMX19_06125 0.22 -0.9
311,245 + MPMX19_06125 0.22 -0.7
311,245 + MPMX19_06125 0.22 -0.7
311,245 + MPMX19_06125 0.22 -1.2
311,245 + MPMX19_06125 0.22 -0.1
311,245 + MPMX19_06125 0.22 -0.4
311,245 + MPMX19_06125 0.22 -1.2
311,245 + MPMX19_06125 0.22 -2.8
311,245 + MPMX19_06125 0.22 -1.9
311,245 + MPMX19_06125 0.22 -0.3
311,245 + MPMX19_06125 0.22 +1.2
311,245 + MPMX19_06125 0.22 -1.0
311,245 + MPMX19_06125 0.22 -1.2
311,245 + MPMX19_06125 0.22 -0.9
311,245 + MPMX19_06125 0.22 -2.0
311,245 + MPMX19_06125 0.22 -1.6
311,245 + MPMX19_06125 0.22 -1.9
311,246 - MPMX19_06125 0.22 -0.7
311,246 - MPMX19_06125 0.22 -0.7
311,246 - MPMX19_06125 0.22 -0.0
311,246 - MPMX19_06125 0.22 -0.0
311,246 - MPMX19_06125 0.22 -0.3
311,246 - MPMX19_06125 0.22 +0.6
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 +1.0
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 -0.2
311,246 - MPMX19_06125 0.22 -0.9
311,246 - MPMX19_06125 0.22 -1.5
311,246 - MPMX19_06125 0.22 -0.7
311,246 - MPMX19_06125 0.22 -0.0
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 +0.1
311,246 - MPMX19_06125 0.22 -0.0
311,246 - MPMX19_06125 0.22 +0.8
311,246 - MPMX19_06125 0.22 -1.0
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 +1.6
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 -0.5
311,246 - MPMX19_06125 0.22 -0.2
311,246 - MPMX19_06125 0.22 +0.2
311,246 - MPMX19_06125 0.22 -1.4
311,246 - MPMX19_06125 0.22 +0.1
311,246 - MPMX19_06125 0.22 -0.6
311,246 - MPMX19_06125 0.22 -1.7
311,246 - MPMX19_06125 0.22 +0.6
311,246 - MPMX19_06125 0.22 -0.4
311,246 - MPMX19_06125 0.22 -0.9

Or see this region's nucleotide sequence