Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06107

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06105 and MPMX19_06106 are separated by 42 nucleotidesMPMX19_06106 and MPMX19_06107 are separated by 206 nucleotidesMPMX19_06107 and MPMX19_06108 overlap by 4 nucleotides MPMX19_06105: MPMX19_06105 - Beta-barrel assembly-enhancing protease, at 288,767 to 290,482 _06105 MPMX19_06106: MPMX19_06106 - Bacteriohemerythrin, at 290,525 to 290,929 _06106 MPMX19_06107: MPMX19_06107 - hypothetical protein, at 291,136 to 291,888 _06107 MPMX19_06108: MPMX19_06108 - Cocaine esterase, at 291,885 to 293,540 _06108 Position (kb) 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.241 kb on - strand, within MPMX19_06105at 290.241 kb on - strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.256 kb on - strand, within MPMX19_06105at 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.527 kb on - strandat 290.527 kb on - strandat 290.527 kb on - strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.553 kb on + strandat 290.553 kb on + strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.682 kb on + strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 291.034 kb on + strandat 291.034 kb on + strandat 291.034 kb on + strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.272 kb on - strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.303 kb on - strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.458 kb on - strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.748 kb on + strand, within MPMX19_06107at 291.748 kb on + strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.886 kb on + strandat 291.886 kb on + strandat 291.886 kb on + strandat 291.886 kb on + strandat 291.887 kb on - strandat 291.887 kb on - strandat 291.887 kb on - strandat 292.019 kb on - strandat 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.291 kb on + strand, within MPMX19_06108at 292.292 kb on - strand, within MPMX19_06108at 292.292 kb on - strand, within MPMX19_06108at 292.292 kb on - strand, within MPMX19_06108at 292.292 kb on - strand, within MPMX19_06108at 292.756 kb on + strand, within MPMX19_06108at 292.756 kb on + strand, within MPMX19_06108at 292.756 kb on + strand, within MPMX19_06108at 292.757 kb on - strand, within MPMX19_06108at 292.757 kb on - strand, within MPMX19_06108at 292.870 kb on + strand, within MPMX19_06108at 292.870 kb on + strand, within MPMX19_06108at 292.871 kb on - strand, within MPMX19_06108at 292.879 kb on + strand, within MPMX19_06108at 292.880 kb on - strand, within MPMX19_06108at 292.888 kb on + strand, within MPMX19_06108at 292.888 kb on + strand, within MPMX19_06108at 292.888 kb on + strand, within MPMX19_06108at 292.888 kb on + strand, within MPMX19_06108

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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290,210 + MPMX19_06105 0.84 -1.4
290,210 + MPMX19_06105 0.84 -1.3
290,210 + MPMX19_06105 0.84 -1.1
290,210 + MPMX19_06105 0.84 -1.2
290,210 + MPMX19_06105 0.84 -0.2
290,210 + MPMX19_06105 0.84 +2.6
290,210 + MPMX19_06105 0.84 +0.3
290,210 + MPMX19_06105 0.84 -0.2
290,210 + MPMX19_06105 0.84 -0.4
290,210 + MPMX19_06105 0.84 -1.0
290,211 - MPMX19_06105 0.84 +2.0
290,211 - MPMX19_06105 0.84 -0.7
290,211 - MPMX19_06105 0.84 +1.0
290,211 - MPMX19_06105 0.84 -0.4
290,211 - MPMX19_06105 0.84 -1.9
290,211 - MPMX19_06105 0.84 -1.6
290,211 - MPMX19_06105 0.84 -1.2
290,211 - MPMX19_06105 0.84 -0.4
290,211 - MPMX19_06105 0.84 -0.4
290,240 + MPMX19_06105 0.86 -1.9
290,240 + MPMX19_06105 0.86 -0.0
290,240 + MPMX19_06105 0.86 -0.9
290,240 + MPMX19_06105 0.86 -0.7
290,240 + MPMX19_06105 0.86 +0.6
290,240 + MPMX19_06105 0.86 +1.6
290,241 - MPMX19_06105 0.86 -1.7
290,241 - MPMX19_06105 0.86 +0.1
290,255 + MPMX19_06105 0.87 +1.0
290,255 + MPMX19_06105 0.87 -0.4
290,255 + MPMX19_06105 0.87 -1.6
290,256 - MPMX19_06105 0.87 -1.2
290,339 + -0.3
290,339 + +0.2
290,339 + -1.5
290,339 + -1.2
290,339 + -1.2
290,340 - -1.9
290,340 - +0.6
290,340 - -1.0
290,340 - -0.6
290,526 + -0.7
290,526 + +0.8
290,526 + -0.6
290,526 + -1.9
290,526 + -0.2
290,526 + -0.4
290,526 + -1.2
290,526 + -0.4
290,526 + -1.6
290,527 - -0.4
290,527 - -1.6
290,527 - -1.5
290,544 + -0.7
290,544 + +1.0
290,544 + +2.2
290,544 + -0.3
290,544 + -1.0
290,545 - -0.2
290,545 - -1.7
290,545 - -2.1
290,545 - -1.2
290,545 - -0.0
290,545 - -0.4
290,545 - -0.7
290,545 - -0.7
290,553 + -0.6
290,553 + -0.2
290,554 - -0.0
290,554 - -1.4
290,554 - -2.4
290,554 - -0.7
290,554 - +1.2
290,554 - -1.1
290,554 - -0.0
290,682 + MPMX19_06106 0.39 -2.8
290,683 - MPMX19_06106 0.39 -0.0
290,683 - MPMX19_06106 0.39 -1.5
290,683 - MPMX19_06106 0.39 -1.0
290,683 - MPMX19_06106 0.39 +1.0
290,769 + MPMX19_06106 0.60 -0.7
290,769 + MPMX19_06106 0.60 -0.2
290,769 + MPMX19_06106 0.60 -0.9
290,769 + MPMX19_06106 0.60 +1.0
290,769 + MPMX19_06106 0.60 -0.4
290,769 + MPMX19_06106 0.60 -1.3
290,769 + MPMX19_06106 0.60 -1.9
290,770 - MPMX19_06106 0.60 -0.4
290,770 - MPMX19_06106 0.60 -0.7
290,770 - MPMX19_06106 0.60 +0.1
290,770 - MPMX19_06106 0.60 -1.0
290,770 - MPMX19_06106 0.60 -1.4
290,922 + -0.3
290,922 + -2.9
290,922 + -0.4
290,922 + -0.7
290,922 + -0.4
290,922 + -0.7
290,922 + -2.6
290,922 + -0.6
290,922 + -0.4
290,922 + -0.4
290,922 + -1.0
290,922 + -1.6
290,922 + -0.7
290,922 + -1.1
290,922 + -2.8
290,922 + +0.4
290,922 + -1.4
290,922 + -1.2
290,922 + -1.3
290,922 + +0.3
290,922 + +0.6
290,922 + -0.6
290,922 + -0.4
290,922 + +0.6
290,922 + -1.6
290,922 + -0.9
290,922 + +0.6
290,922 + -0.6
290,922 + -0.7
290,922 + +1.6
290,922 + -0.6
290,922 + -0.6
290,922 + +0.4
290,922 + -1.4
290,922 + -0.7
290,922 + -1.7
290,922 + -0.7
290,922 + -1.4
290,922 + -1.3
290,922 + -1.6
290,922 + -1.4
290,923 - +1.0
290,923 - -1.8
290,923 - -0.6
290,923 - -1.0
290,923 - -1.2
290,923 - -1.2
290,923 - -0.7
290,923 - -1.4
290,923 - -1.4
290,923 - -1.6
290,923 - -0.8
290,923 - -0.9
290,923 - -0.0
290,923 - -1.2
290,923 - -1.4
290,923 - -1.0
290,923 - -2.2
290,923 - -1.2
290,923 - -0.6
290,923 - -0.3
290,923 - -0.6
290,923 - -1.0
290,923 - -0.4
290,923 - -0.7
290,923 - -0.6
291,034 + -0.4
291,034 + -0.9
291,034 + -0.0
291,035 - -0.0
291,035 - -0.6
291,035 - +0.6
291,035 - +0.2
291,272 - MPMX19_06107 0.18 -0.9
291,302 + MPMX19_06107 0.22 -1.6
291,302 + MPMX19_06107 0.22 +0.6
291,302 + MPMX19_06107 0.22 +1.0
291,302 + MPMX19_06107 0.22 -2.4
291,302 + MPMX19_06107 0.22 -1.4
291,303 - MPMX19_06107 0.22 -1.0
291,457 + MPMX19_06107 0.43 -1.0
291,457 + MPMX19_06107 0.43 -1.2
291,457 + MPMX19_06107 0.43 -1.9
291,458 - MPMX19_06107 0.43 -1.7
291,487 + MPMX19_06107 0.47 -1.0
291,487 + MPMX19_06107 0.47 -0.0
291,487 + MPMX19_06107 0.47 -1.5
291,487 + MPMX19_06107 0.47 -2.3
291,488 - MPMX19_06107 0.47 -1.4
291,488 - MPMX19_06107 0.47 +0.6
291,488 - MPMX19_06107 0.47 -1.6
291,748 + MPMX19_06107 0.81 -1.0
291,748 + MPMX19_06107 0.81 +0.4
291,749 - MPMX19_06107 0.81 -1.6
291,749 - MPMX19_06107 0.81 -0.0
291,749 - MPMX19_06107 0.81 -1.9
291,886 + -0.9
291,886 + -0.0
291,886 + -2.0
291,886 + -0.4
291,887 - -0.6
291,887 - +0.8
291,887 - -0.2
292,019 - +0.2
292,291 + MPMX19_06108 0.25 -0.4
292,291 + MPMX19_06108 0.25 -1.0
292,291 + MPMX19_06108 0.25 -1.0
292,291 + MPMX19_06108 0.25 -1.5
292,291 + MPMX19_06108 0.25 +1.0
292,291 + MPMX19_06108 0.25 +0.8
292,291 + MPMX19_06108 0.25 -1.2
292,292 - MPMX19_06108 0.25 -1.0
292,292 - MPMX19_06108 0.25 -0.3
292,292 - MPMX19_06108 0.25 -0.4
292,292 - MPMX19_06108 0.25 +1.6
292,756 + MPMX19_06108 0.53 -2.3
292,756 + MPMX19_06108 0.53 +0.8
292,756 + MPMX19_06108 0.53 -0.7
292,757 - MPMX19_06108 0.53 -0.3
292,757 - MPMX19_06108 0.53 -0.0
292,870 + MPMX19_06108 0.59 -2.3
292,870 + MPMX19_06108 0.59 +0.6
292,871 - MPMX19_06108 0.60 -0.4
292,879 + MPMX19_06108 0.60 -0.7
292,880 - MPMX19_06108 0.60 -0.7
292,888 + MPMX19_06108 0.61 -0.4
292,888 + MPMX19_06108 0.61 -2.1
292,888 + MPMX19_06108 0.61 +0.6
292,888 + MPMX19_06108 0.61 -0.0

Or see this region's nucleotide sequence