Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06104

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06102 and MPMX19_06103 are separated by 52 nucleotidesMPMX19_06103 and MPMX19_06104 overlap by 4 nucleotidesMPMX19_06104 and MPMX19_06105 are separated by 92 nucleotides MPMX19_06102: MPMX19_06102 - Membrane-bound lytic murein transglycosylase C, at 284,775 to 287,072 _06102 MPMX19_06103: MPMX19_06103 - Molybdenum cofactor biosynthesis protein B, at 287,125 to 287,661 _06103 MPMX19_06104: MPMX19_06104 - hypothetical protein, at 287,658 to 288,674 _06104 MPMX19_06105: MPMX19_06105 - Beta-barrel assembly-enhancing protease, at 288,767 to 290,482 _06105 Position (kb) 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.788 kb on + strand, within MPMX19_06102at 286.822 kb on - strand, within MPMX19_06102at 286.822 kb on - strand, within MPMX19_06102at 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.887 kb on + strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.888 kb on - strandat 286.889 kb on + strandat 286.889 kb on + strandat 286.890 kb on - strandat 286.890 kb on - strandat 286.890 kb on - strandat 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.413 kb on + strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.414 kb on - strand, within MPMX19_06103at 287.452 kb on + strand, within MPMX19_06103at 287.452 kb on + strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.453 kb on - strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.461 kb on + strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.462 kb on - strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.524 kb on + strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.525 kb on - strand, within MPMX19_06103at 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 288.066 kb on + strand, within MPMX19_06104at 288.066 kb on + strand, within MPMX19_06104at 288.066 kb on + strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.067 kb on - strand, within MPMX19_06104at 288.217 kb on + strand, within MPMX19_06104at 288.217 kb on + strand, within MPMX19_06104at 288.217 kb on + strand, within MPMX19_06104at 288.218 kb on - strand, within MPMX19_06104at 288.333 kb on + strand, within MPMX19_06104at 288.333 kb on + strand, within MPMX19_06104at 288.333 kb on + strand, within MPMX19_06104at 288.333 kb on + strand, within MPMX19_06104at 288.334 kb on - strand, within MPMX19_06104at 288.334 kb on - strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.372 kb on + strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.373 kb on - strand, within MPMX19_06104at 288.605 kb on + strandat 288.605 kb on + strandat 288.605 kb on + strandat 288.605 kb on + strandat 288.606 kb on - strandat 288.672 kb on + strandat 288.672 kb on + strandat 288.673 kb on - strandat 288.697 kb on - strandat 288.861 kb on + strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.862 kb on - strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.902 kb on + strandat 288.903 kb on - strandat 288.903 kb on - strandat 288.917 kb on + strandat 288.917 kb on + strandat 288.917 kb on + strandat 288.917 kb on + strandat 288.918 kb on - strandat 288.918 kb on - strandat 288.918 kb on - strandat 288.918 kb on - strandat 289.160 kb on + strand, within MPMX19_06105at 289.160 kb on + strand, within MPMX19_06105at 289.160 kb on + strand, within MPMX19_06105at 289.161 kb on - strand, within MPMX19_06105at 289.304 kb on + strand, within MPMX19_06105at 289.304 kb on + strand, within MPMX19_06105at 289.304 kb on + strand, within MPMX19_06105at 289.304 kb on + strand, within MPMX19_06105at 289.305 kb on - strand, within MPMX19_06105at 289.305 kb on - strand, within MPMX19_06105at 289.305 kb on - strand, within MPMX19_06105at 289.305 kb on - strand, within MPMX19_06105at 289.367 kb on + strand, within MPMX19_06105at 289.367 kb on + strand, within MPMX19_06105at 289.367 kb on + strand, within MPMX19_06105at 289.466 kb on + strand, within MPMX19_06105at 289.466 kb on + strand, within MPMX19_06105at 289.466 kb on + strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105at 289.467 kb on - strand, within MPMX19_06105

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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286,788 + MPMX19_06102 0.88 -0.0
286,822 - MPMX19_06102 0.89 -0.2
286,822 - MPMX19_06102 0.89 -0.0
286,887 + -0.7
286,887 + +1.2
286,887 + -1.0
286,887 + -0.0
286,887 + -0.7
286,887 + -0.2
286,887 + -0.4
286,888 - -0.1
286,888 - +1.0
286,888 - +0.6
286,888 - +0.6
286,888 - +0.3
286,888 - +0.6
286,888 - -0.0
286,889 + -0.7
286,889 + -0.0
286,890 - -0.0
286,890 - +1.6
286,890 - +0.6
287,413 + MPMX19_06103 0.54 -1.7
287,413 + MPMX19_06103 0.54 +1.6
287,413 + MPMX19_06103 0.54 -1.9
287,413 + MPMX19_06103 0.54 +0.3
287,413 + MPMX19_06103 0.54 +0.4
287,414 - MPMX19_06103 0.54 -1.2
287,414 - MPMX19_06103 0.54 +0.4
287,414 - MPMX19_06103 0.54 +0.2
287,452 + MPMX19_06103 0.61 -0.0
287,452 + MPMX19_06103 0.61 -1.4
287,453 - MPMX19_06103 0.61 +1.0
287,453 - MPMX19_06103 0.61 +0.3
287,453 - MPMX19_06103 0.61 -0.0
287,461 + MPMX19_06103 0.63 +0.6
287,461 + MPMX19_06103 0.63 -0.1
287,461 + MPMX19_06103 0.63 +0.3
287,461 + MPMX19_06103 0.63 +1.6
287,461 + MPMX19_06103 0.63 +0.6
287,461 + MPMX19_06103 0.63 -1.2
287,461 + MPMX19_06103 0.63 -0.4
287,461 + MPMX19_06103 0.63 -0.0
287,461 + MPMX19_06103 0.63 -2.9
287,461 + MPMX19_06103 0.63 -0.0
287,461 + MPMX19_06103 0.63 -0.6
287,462 - MPMX19_06103 0.63 -0.7
287,462 - MPMX19_06103 0.63 -1.4
287,462 - MPMX19_06103 0.63 +1.6
287,462 - MPMX19_06103 0.63 -0.7
287,462 - MPMX19_06103 0.63 -1.1
287,462 - MPMX19_06103 0.63 -1.0
287,462 - MPMX19_06103 0.63 +0.6
287,524 + MPMX19_06103 0.74 -2.1
287,524 + MPMX19_06103 0.74 -0.2
287,524 + MPMX19_06103 0.74 -0.8
287,524 + MPMX19_06103 0.74 +0.2
287,524 + MPMX19_06103 0.74 +1.6
287,524 + MPMX19_06103 0.74 -1.2
287,524 + MPMX19_06103 0.74 -1.3
287,524 + MPMX19_06103 0.74 -0.0
287,524 + MPMX19_06103 0.74 -1.7
287,524 + MPMX19_06103 0.74 -0.7
287,524 + MPMX19_06103 0.74 -0.0
287,524 + MPMX19_06103 0.74 +0.8
287,524 + MPMX19_06103 0.74 -1.5
287,524 + MPMX19_06103 0.74 -1.2
287,524 + MPMX19_06103 0.74 +0.6
287,524 + MPMX19_06103 0.74 +0.1
287,525 - MPMX19_06103 0.74 +1.8
287,525 - MPMX19_06103 0.74 +0.6
287,525 - MPMX19_06103 0.74 +0.1
287,525 - MPMX19_06103 0.74 -1.6
287,525 - MPMX19_06103 0.74 +0.9
287,525 - MPMX19_06103 0.74 +0.8
287,525 - MPMX19_06103 0.74 -0.8
287,525 - MPMX19_06103 0.74 -2.0
287,525 - MPMX19_06103 0.74 -0.0
287,525 - MPMX19_06103 0.74 +1.0
287,525 - MPMX19_06103 0.74 -0.4
287,525 - MPMX19_06103 0.74 -1.7
287,652 + -0.8
287,652 + -1.2
287,652 + -2.4
287,652 + -0.0
287,652 + -2.0
287,652 + -0.9
287,652 + -0.0
287,652 + +0.4
287,652 + +2.2
287,653 - -0.7
287,653 - -0.4
287,653 - -1.0
287,653 - -0.0
287,653 - +0.2
287,653 - -0.2
287,653 - -0.8
288,066 + MPMX19_06104 0.40 -0.4
288,066 + MPMX19_06104 0.40 +0.1
288,066 + MPMX19_06104 0.40 -1.0
288,067 - MPMX19_06104 0.40 -0.8
288,067 - MPMX19_06104 0.40 -1.5
288,067 - MPMX19_06104 0.40 +0.6
288,067 - MPMX19_06104 0.40 -1.0
288,217 + MPMX19_06104 0.55 -0.4
288,217 + MPMX19_06104 0.55 -1.2
288,217 + MPMX19_06104 0.55 -0.4
288,218 - MPMX19_06104 0.55 -1.2
288,333 + MPMX19_06104 0.66 -0.0
288,333 + MPMX19_06104 0.66 -1.0
288,333 + MPMX19_06104 0.66 -1.6
288,333 + MPMX19_06104 0.66 -1.6
288,334 - MPMX19_06104 0.66 -0.4
288,334 - MPMX19_06104 0.66 -0.0
288,372 + MPMX19_06104 0.70 +0.9
288,372 + MPMX19_06104 0.70 -1.4
288,372 + MPMX19_06104 0.70 -0.4
288,372 + MPMX19_06104 0.70 -0.7
288,372 + MPMX19_06104 0.70 -0.0
288,372 + MPMX19_06104 0.70 -0.7
288,373 - MPMX19_06104 0.70 -0.2
288,373 - MPMX19_06104 0.70 -1.0
288,373 - MPMX19_06104 0.70 -0.0
288,373 - MPMX19_06104 0.70 -0.4
288,373 - MPMX19_06104 0.70 -0.4
288,373 - MPMX19_06104 0.70 +0.6
288,373 - MPMX19_06104 0.70 -1.0
288,373 - MPMX19_06104 0.70 -1.2
288,373 - MPMX19_06104 0.70 -1.2
288,373 - MPMX19_06104 0.70 +0.6
288,605 + +1.6
288,605 + -1.4
288,605 + -1.0
288,605 + +1.8
288,606 - -0.0
288,672 + -1.4
288,672 + +1.6
288,673 - -1.2
288,697 - +0.5
288,861 + -0.2
288,862 - -1.4
288,862 - -0.9
288,862 - -2.1
288,862 - -2.0
288,862 - -0.7
288,862 - -0.4
288,862 - -1.6
288,902 + -0.4
288,902 + -0.2
288,902 + -0.2
288,902 + +0.6
288,902 + -0.4
288,902 + -0.6
288,902 + +0.2
288,902 + -3.4
288,902 + +0.6
288,903 - +0.6
288,903 - -1.5
288,917 + -1.6
288,917 + -2.3
288,917 + -0.2
288,917 + -1.0
288,918 - -0.4
288,918 - -2.3
288,918 - -0.2
288,918 - -0.6
289,160 + MPMX19_06105 0.23 +0.3
289,160 + MPMX19_06105 0.23 -1.4
289,160 + MPMX19_06105 0.23 -0.0
289,161 - MPMX19_06105 0.23 -0.0
289,304 + MPMX19_06105 0.31 -2.4
289,304 + MPMX19_06105 0.31 +0.6
289,304 + MPMX19_06105 0.31 -1.2
289,304 + MPMX19_06105 0.31 +0.6
289,305 - MPMX19_06105 0.31 -2.3
289,305 - MPMX19_06105 0.31 -2.4
289,305 - MPMX19_06105 0.31 -1.7
289,305 - MPMX19_06105 0.31 -0.7
289,367 + MPMX19_06105 0.35 +0.6
289,367 + MPMX19_06105 0.35 -0.2
289,367 + MPMX19_06105 0.35 -0.0
289,466 + MPMX19_06105 0.41 -1.2
289,466 + MPMX19_06105 0.41 -1.6
289,466 + MPMX19_06105 0.41 +0.6
289,467 - MPMX19_06105 0.41 +0.1
289,467 - MPMX19_06105 0.41 -1.7
289,467 - MPMX19_06105 0.41 +1.6
289,467 - MPMX19_06105 0.41 -0.0
289,467 - MPMX19_06105 0.41 -1.0
289,467 - MPMX19_06105 0.41 +0.6
289,467 - MPMX19_06105 0.41 -1.5
289,467 - MPMX19_06105 0.41 -0.4

Or see this region's nucleotide sequence