Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06048 and MPMX19_06049 are separated by 102 nucleotides MPMX19_06049 and MPMX19_06050 are separated by 293 nucleotides
MPMX19_06048: MPMX19_06048 - hypothetical protein, at 209,205 to 211,841
_06048
MPMX19_06049: MPMX19_06049 - hypothetical protein, at 211,944 to 212,135
_06049
MPMX19_06050: MPMX19_06050 - Phosphoenolpyruvate carboxylase, at 212,429 to 215,200
_06050
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 211.088 kb on + strand, within MPMX19_06048 at 211.089 kb on - strand, within MPMX19_06048 at 211.089 kb on - strand, within MPMX19_06048 at 211.089 kb on - strand, within MPMX19_06048 at 212.135 kb on + strand at 212.136 kb on - strand at 212.174 kb on - strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.328 kb on + strand at 212.329 kb on - strand at 212.329 kb on - strand at 212.329 kb on - strand at 212.329 kb on - strand at 212.562 kb on + strand at 212.563 kb on - strand at 212.563 kb on - strand at 212.563 kb on - strand at 212.563 kb on - strand at 212.724 kb on + strand, within MPMX19_06050 at 212.724 kb on + strand, within MPMX19_06050 at 212.725 kb on - strand, within MPMX19_06050 at 212.725 kb on - strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.853 kb on + strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.854 kb on - strand, within MPMX19_06050 at 212.881 kb on - strand, within MPMX19_06050 at 213.033 kb on + strand, within MPMX19_06050 at 213.033 kb on + strand, within MPMX19_06050 at 213.033 kb on + strand, within MPMX19_06050 at 213.034 kb on - strand, within MPMX19_06050 at 213.034 kb on - strand, within MPMX19_06050 at 213.057 kb on + strand, within MPMX19_06050 at 213.057 kb on + strand, within MPMX19_06050 at 213.058 kb on - strand, within MPMX19_06050 at 213.058 kb on - strand, within MPMX19_06050 at 213.058 kb on - strand, within MPMX19_06050 at 213.058 kb on - strand, within MPMX19_06050 at 213.072 kb on + strand, within MPMX19_06050 at 213.072 kb on + strand, within MPMX19_06050 at 213.073 kb on - strand, within MPMX19_06050 at 213.073 kb on - strand, within MPMX19_06050 at 213.073 kb on - strand, within MPMX19_06050
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 211,088 + MPMX19_06048 0.71 -1.7 211,089 - MPMX19_06048 0.71 -1.6 211,089 - MPMX19_06048 0.71 -1.0 211,089 - MPMX19_06048 0.71 -2.1 212,135 + -0.6 212,136 - -1.0 212,174 - -0.1 212,328 + +0.6 212,328 + -1.7 212,328 + +1.2 212,328 + +0.3 212,328 + -1.4 212,328 + -1.4 212,328 + +1.6 212,329 - -0.2 212,329 - -1.0 212,329 - -0.5 212,329 - +1.2 212,562 + +0.8 212,563 - +1.4 212,563 - +1.8 212,563 - +2.0 212,563 - +1.2 212,724 + MPMX19_06050 0.11 +1.9 212,724 + MPMX19_06050 0.11 +0.6 212,725 - MPMX19_06050 0.11 +1.8 212,725 - MPMX19_06050 0.11 +2.9 212,853 + MPMX19_06050 0.15 +1.6 212,853 + MPMX19_06050 0.15 +1.6 212,853 + MPMX19_06050 0.15 +2.4 212,853 + MPMX19_06050 0.15 +1.7 212,853 + MPMX19_06050 0.15 +1.7 212,853 + MPMX19_06050 0.15 +1.2 212,853 + MPMX19_06050 0.15 +3.1 212,853 + MPMX19_06050 0.15 +1.6 212,854 - MPMX19_06050 0.15 +2.6 212,854 - MPMX19_06050 0.15 +1.4 212,854 - MPMX19_06050 0.15 +2.8 212,854 - MPMX19_06050 0.15 +1.8 212,854 - MPMX19_06050 0.15 +3.8 212,854 - MPMX19_06050 0.15 +1.4 212,854 - MPMX19_06050 0.15 +0.5 212,854 - MPMX19_06050 0.15 +3.0 212,854 - MPMX19_06050 0.15 +1.2 212,881 - MPMX19_06050 0.16 +1.6 213,033 + MPMX19_06050 0.22 +2.6 213,033 + MPMX19_06050 0.22 +0.8 213,033 + MPMX19_06050 0.22 +2.6 213,034 - MPMX19_06050 0.22 -0.7 213,034 - MPMX19_06050 0.22 +1.3 213,057 + MPMX19_06050 0.23 +1.9 213,057 + MPMX19_06050 0.23 +1.0 213,058 - MPMX19_06050 0.23 +0.6 213,058 - MPMX19_06050 0.23 +0.8 213,058 - MPMX19_06050 0.23 +2.1 213,058 - MPMX19_06050 0.23 +2.7 213,072 + MPMX19_06050 0.23 +1.8 213,072 + MPMX19_06050 0.23 +1.0 213,073 - MPMX19_06050 0.23 +2.3 213,073 - MPMX19_06050 0.23 +1.4 213,073 - MPMX19_06050 0.23 +1.7
Or see this region's nucleotide sequence