Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05522 and MPMX19_05523 are separated by 112 nucleotides MPMX19_05523 and MPMX19_05524 are separated by 76 nucleotides MPMX19_05524 and MPMX19_05525 are separated by 118 nucleotides
MPMX19_05522: MPMX19_05522 - Ubiquinone hydroxylase UbiL, at 229,185 to 230,459
_05522
MPMX19_05523: MPMX19_05523 - Outer-membrane lipoprotein carrier protein, at 230,572 to 231,249
_05523
MPMX19_05524: MPMX19_05524 - hypothetical protein, at 231,326 to 231,961
_05524
MPMX19_05525: MPMX19_05525 - HTH-type transcriptional regulator VirS, at 232,080 to 233,141
_05525
Position (kb) 231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 230.513 kb on + strand at 231.332 kb on + strand at 231.332 kb on + strand at 231.332 kb on + strand at 231.332 kb on + strand at 231.332 kb on + strand at 231.333 kb on - strand at 231.333 kb on - strand at 231.333 kb on - strand at 231.333 kb on - strand at 231.333 kb on - strand at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.506 kb on + strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.507 kb on - strand, within MPMX19_05524 at 231.845 kb on + strand, within MPMX19_05524 at 231.845 kb on + strand, within MPMX19_05524 at 231.845 kb on + strand, within MPMX19_05524 at 231.845 kb on + strand, within MPMX19_05524 at 231.845 kb on + strand, within MPMX19_05524 at 231.846 kb on - strand, within MPMX19_05524 at 231.846 kb on - strand, within MPMX19_05524 at 231.846 kb on - strand, within MPMX19_05524 at 231.979 kb on + strand at 232.002 kb on + strand at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.293 kb on + strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.294 kb on - strand, within MPMX19_05525 at 232.518 kb on + strand, within MPMX19_05525 at 232.519 kb on - strand, within MPMX19_05525 at 232.519 kb on - strand, within MPMX19_05525 at 232.890 kb on + strand, within MPMX19_05525 at 232.890 kb on + strand, within MPMX19_05525 at 232.890 kb on + strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525 at 232.891 kb on - strand, within MPMX19_05525
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 230,457 + -1.1 230,457 + +0.1 230,457 + +1.1 230,457 + +0.2 230,457 + -0.3 230,457 + +0.5 230,457 + +0.2 230,457 + -1.7 230,457 + -1.4 230,457 + +0.5 230,457 + -0.8 230,457 + -0.5 230,457 + +1.2 230,457 + -2.4 230,457 + -0.5 230,457 + -0.5 230,457 + +1.1 230,457 + -0.5 230,457 + -0.5 230,458 - -2.5 230,458 - -0.1 230,458 - -1.3 230,458 - +0.2 230,458 - -0.7 230,458 - -2.2 230,458 - -2.0 230,458 - -0.1 230,458 - -1.7 230,458 - -2.3 230,458 - +0.7 230,458 - -1.8 230,458 - -1.0 230,458 - +0.1 230,458 - +0.8 230,458 - -1.5 230,458 - -1.1 230,458 - +0.5 230,458 - +0.9 230,458 - -1.8 230,458 - -1.9 230,458 - +0.2 230,458 - -2.7 230,458 - -0.1 230,458 - +0.2 230,458 - +1.5 230,458 - -1.7 230,458 - -0.8 230,458 - -1.1 230,458 - -1.8 230,458 - -1.3 230,513 + -1.5 230,513 + -0.3 230,513 + -0.5 230,513 + -0.1 230,513 + -1.8 230,513 + -0.3 230,513 + -0.1 230,513 + -2.3 230,513 + -1.3 230,513 + +0.3 230,513 + -0.5 230,513 + -2.0 230,513 + -1.5 230,513 + -0.9 230,513 + -1.1 230,513 + -1.1 230,513 + -2.2 230,513 + +0.3 231,332 + +1.5 231,332 + -2.4 231,332 + -0.1 231,332 + -1.8 231,332 + -1.2 231,333 - -1.6 231,333 - -2.2 231,333 - +1.5 231,333 - -0.6 231,333 - -0.5 231,506 + MPMX19_05524 0.28 +0.1 231,506 + MPMX19_05524 0.28 -0.1 231,506 + MPMX19_05524 0.28 -1.1 231,506 + MPMX19_05524 0.28 -0.3 231,506 + MPMX19_05524 0.28 -1.0 231,506 + MPMX19_05524 0.28 -0.5 231,506 + MPMX19_05524 0.28 -1.0 231,507 - MPMX19_05524 0.28 -1.2 231,507 - MPMX19_05524 0.28 +0.1 231,507 - MPMX19_05524 0.28 -1.1 231,507 - MPMX19_05524 0.28 -1.8 231,507 - MPMX19_05524 0.28 -0.4 231,507 - MPMX19_05524 0.28 -2.0 231,845 + MPMX19_05524 0.82 -1.5 231,845 + MPMX19_05524 0.82 -0.8 231,845 + MPMX19_05524 0.82 -1.1 231,845 + MPMX19_05524 0.82 -1.1 231,845 + MPMX19_05524 0.82 +2.5 231,846 - MPMX19_05524 0.82 -0.8 231,846 - MPMX19_05524 0.82 -0.1 231,846 - MPMX19_05524 0.82 -0.8 231,979 + -1.5 232,002 + -0.8 232,293 + MPMX19_05525 0.20 -1.3 232,293 + MPMX19_05525 0.20 -0.2 232,293 + MPMX19_05525 0.20 -2.3 232,293 + MPMX19_05525 0.20 -0.7 232,293 + MPMX19_05525 0.20 -0.1 232,293 + MPMX19_05525 0.20 +1.5 232,293 + MPMX19_05525 0.20 -1.1 232,293 + MPMX19_05525 0.20 -0.8 232,293 + MPMX19_05525 0.20 -2.0 232,293 + MPMX19_05525 0.20 -2.1 232,293 + MPMX19_05525 0.20 -1.3 232,294 - MPMX19_05525 0.20 -3.5 232,294 - MPMX19_05525 0.20 +0.5 232,294 - MPMX19_05525 0.20 +0.0 232,294 - MPMX19_05525 0.20 -0.8 232,294 - MPMX19_05525 0.20 -2.2 232,294 - MPMX19_05525 0.20 -2.0 232,294 - MPMX19_05525 0.20 -0.5 232,294 - MPMX19_05525 0.20 -0.4 232,518 + MPMX19_05525 0.41 -0.5 232,519 - MPMX19_05525 0.41 -2.1 232,519 - MPMX19_05525 0.41 +1.1 232,890 + MPMX19_05525 0.76 +1.9 232,890 + MPMX19_05525 0.76 -0.5 232,890 + MPMX19_05525 0.76 +0.9 232,891 - MPMX19_05525 0.76 -1.5 232,891 - MPMX19_05525 0.76 +0.5 232,891 - MPMX19_05525 0.76 -0.8 232,891 - MPMX19_05525 0.76 -1.3 232,891 - MPMX19_05525 0.76 -1.0 232,891 - MPMX19_05525 0.76 -0.5 232,891 - MPMX19_05525 0.76 -0.5 232,891 - MPMX19_05525 0.76 -0.5 232,891 - MPMX19_05525 0.76 -0.8 232,891 - MPMX19_05525 0.76 -0.5 232,891 - MPMX19_05525 0.76 -1.0
Or see this region's nucleotide sequence