Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05366 and MPMX19_05367 are separated by 64 nucleotides MPMX19_05367 and MPMX19_05368 are separated by 368 nucleotides MPMX19_05368 and MPMX19_05369 are separated by 94 nucleotides MPMX19_05369 and MPMX19_05370 are separated by 137 nucleotides
MPMX19_05366: MPMX19_05366 - hypothetical protein, at 40,498 to 41,889
_05366
MPMX19_05367: MPMX19_05367 - hypothetical protein, at 41,954 to 42,388
_05367
MPMX19_05368: MPMX19_05368 - Copper chaperone CopZ, at 42,757 to 42,957
_05368
MPMX19_05369: MPMX19_05369 - hypothetical protein, at 43,052 to 43,216
_05369
MPMX19_05370: MPMX19_05370 - hypothetical protein, at 43,354 to 43,962
_05370
Position (kb) 42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.910 kb on + strand at 41.997 kb on + strand at 41.997 kb on + strand at 41.997 kb on + strand at 41.997 kb on + strand at 41.997 kb on + strand at 41.998 kb on - strand, within MPMX19_05367 at 41.998 kb on - strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.168 kb on + strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.169 kb on - strand, within MPMX19_05367 at 42.174 kb on + strand, within MPMX19_05367 at 42.174 kb on + strand, within MPMX19_05367 at 42.174 kb on + strand, within MPMX19_05367 at 42.174 kb on + strand, within MPMX19_05367 at 42.175 kb on - strand, within MPMX19_05367 at 42.175 kb on - strand, within MPMX19_05367 at 42.231 kb on + strand, within MPMX19_05367 at 42.297 kb on + strand, within MPMX19_05367 at 42.414 kb on + strand at 42.414 kb on + strand at 42.415 kb on - strand at 42.451 kb on - strand at 42.463 kb on + strand at 42.463 kb on + strand at 42.463 kb on + strand at 42.464 kb on - strand at 42.464 kb on - strand at 42.464 kb on - strand at 42.464 kb on - strand at 42.935 kb on - strand, within MPMX19_05368 at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.941 kb on + strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 42.942 kb on - strand at 43.053 kb on + strand at 43.053 kb on + strand at 43.053 kb on + strand at 43.053 kb on + strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.098 kb on + strand, within MPMX19_05369 at 43.098 kb on + strand, within MPMX19_05369 at 43.098 kb on + strand, within MPMX19_05369 at 43.099 kb on - strand, within MPMX19_05369 at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.646 kb on + strand, within MPMX19_05370 at 43.646 kb on + strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 41,910 + -0.9 41,997 + -1.7 41,997 + +1.0 41,997 + +0.8 41,997 + -0.7 41,997 + -0.5 41,998 - MPMX19_05367 0.10 -0.1 41,998 - MPMX19_05367 0.10 +0.5 42,168 + MPMX19_05367 0.49 -0.9 42,168 + MPMX19_05367 0.49 +1.9 42,168 + MPMX19_05367 0.49 -1.1 42,168 + MPMX19_05367 0.49 +1.1 42,168 + MPMX19_05367 0.49 +0.5 42,168 + MPMX19_05367 0.49 -1.1 42,168 + MPMX19_05367 0.49 +0.5 42,168 + MPMX19_05367 0.49 +0.2 42,168 + MPMX19_05367 0.49 -0.6 42,168 + MPMX19_05367 0.49 -0.8 42,168 + MPMX19_05367 0.49 -2.0 42,168 + MPMX19_05367 0.49 +2.2 42,168 + MPMX19_05367 0.49 -0.1 42,168 + MPMX19_05367 0.49 -1.0 42,168 + MPMX19_05367 0.49 +1.5 42,168 + MPMX19_05367 0.49 +1.5 42,168 + MPMX19_05367 0.49 -1.6 42,168 + MPMX19_05367 0.49 +1.5 42,168 + MPMX19_05367 0.49 -0.7 42,168 + MPMX19_05367 0.49 -0.1 42,168 + MPMX19_05367 0.49 +0.9 42,168 + MPMX19_05367 0.49 -0.4 42,168 + MPMX19_05367 0.49 +1.2 42,168 + MPMX19_05367 0.49 -0.1 42,168 + MPMX19_05367 0.49 -0.7 42,168 + MPMX19_05367 0.49 -2.0 42,168 + MPMX19_05367 0.49 +0.5 42,168 + MPMX19_05367 0.49 +0.2 42,169 - MPMX19_05367 0.49 -0.1 42,169 - MPMX19_05367 0.49 -0.1 42,169 - MPMX19_05367 0.49 -1.7 42,169 - MPMX19_05367 0.49 -0.7 42,169 - MPMX19_05367 0.49 -0.9 42,169 - MPMX19_05367 0.49 -2.4 42,169 - MPMX19_05367 0.49 -0.1 42,169 - MPMX19_05367 0.49 +0.5 42,169 - MPMX19_05367 0.49 +0.5 42,169 - MPMX19_05367 0.49 -0.1 42,169 - MPMX19_05367 0.49 -0.5 42,169 - MPMX19_05367 0.49 -0.5 42,169 - MPMX19_05367 0.49 -1.5 42,174 + MPMX19_05367 0.51 -0.3 42,174 + MPMX19_05367 0.51 -1.1 42,174 + MPMX19_05367 0.51 -1.2 42,174 + MPMX19_05367 0.51 -0.7 42,175 - MPMX19_05367 0.51 +0.5 42,175 - MPMX19_05367 0.51 -0.5 42,231 + MPMX19_05367 0.64 -1.4 42,297 + MPMX19_05367 0.79 -1.1 42,414 + +0.9 42,414 + -0.2 42,415 - -0.9 42,451 - -1.0 42,463 + -1.4 42,463 + +0.5 42,463 + +0.5 42,464 - -0.5 42,464 - -0.9 42,464 - -0.1 42,464 - -1.4 42,935 - MPMX19_05368 0.89 -1.4 42,941 + -1.5 42,941 + -0.7 42,941 + -0.1 42,941 + -0.5 42,941 + -1.4 42,941 + -0.4 42,941 + -0.4 42,941 + -0.9 42,941 + -0.5 42,941 + -0.9 42,941 + -0.9 42,942 - -2.6 42,942 - -1.7 42,942 - +1.5 42,942 - -0.3 42,942 - -1.9 42,942 - +1.0 42,942 - -1.2 42,942 - -0.5 42,942 - +1.5 42,942 - +0.1 42,942 - -0.4 42,942 - +1.0 43,053 + +1.0 43,053 + -1.9 43,053 + -1.5 43,053 + -0.3 43,054 - +1.1 43,054 - -1.7 43,054 - -0.5 43,054 - -0.5 43,054 - -1.7 43,098 + MPMX19_05369 0.28 +0.5 43,098 + MPMX19_05369 0.28 -2.7 43,098 + MPMX19_05369 0.28 -0.9 43,099 - MPMX19_05369 0.28 -0.5 43,285 + +0.2 43,285 + +2.0 43,285 + -0.1 43,286 - -0.5 43,286 - +0.5 43,412 + +0.5 43,412 + +0.7 43,412 + +0.5 43,412 + +0.7 43,412 + -1.5 43,413 - -0.9 43,413 - -0.1 43,413 - -1.0 43,413 - +1.1 43,413 - -0.3 43,553 + MPMX19_05370 0.33 -1.7 43,553 + MPMX19_05370 0.33 +0.4 43,553 + MPMX19_05370 0.33 -1.2 43,553 + MPMX19_05370 0.33 +1.5 43,553 + MPMX19_05370 0.33 +0.1 43,553 + MPMX19_05370 0.33 -1.5 43,553 + MPMX19_05370 0.33 -0.1 43,553 + MPMX19_05370 0.33 -0.5 43,553 + MPMX19_05370 0.33 -0.8 43,553 + MPMX19_05370 0.33 +0.5 43,553 + MPMX19_05370 0.33 +0.6 43,553 + MPMX19_05370 0.33 +0.1 43,554 - MPMX19_05370 0.33 +0.5 43,554 - MPMX19_05370 0.33 -0.9 43,554 - MPMX19_05370 0.33 +0.5 43,554 - MPMX19_05370 0.33 -0.1 43,554 - MPMX19_05370 0.33 -1.5 43,554 - MPMX19_05370 0.33 -1.4 43,554 - MPMX19_05370 0.33 +0.7 43,554 - MPMX19_05370 0.33 -1.1 43,554 - MPMX19_05370 0.33 +0.2 43,554 - MPMX19_05370 0.33 -1.1 43,554 - MPMX19_05370 0.33 -0.7 43,554 - MPMX19_05370 0.33 -1.0 43,554 - MPMX19_05370 0.33 -2.6 43,554 - MPMX19_05370 0.33 -0.5 43,554 - MPMX19_05370 0.33 -0.1 43,554 - MPMX19_05370 0.33 -1.1 43,554 - MPMX19_05370 0.33 +1.8 43,554 - MPMX19_05370 0.33 -0.9 43,554 - MPMX19_05370 0.33 -1.7 43,554 - MPMX19_05370 0.33 -1.2 43,554 - MPMX19_05370 0.33 -1.5 43,554 - MPMX19_05370 0.33 -1.7 43,554 - MPMX19_05370 0.33 -0.5 43,554 - MPMX19_05370 0.33 +0.2 43,554 - MPMX19_05370 0.33 -1.1 43,554 - MPMX19_05370 0.33 +0.5 43,554 - MPMX19_05370 0.33 -0.1 43,616 + MPMX19_05370 0.43 -0.5 43,616 + MPMX19_05370 0.43 -1.0 43,616 + MPMX19_05370 0.43 -1.5 43,616 + MPMX19_05370 0.43 -0.1 43,616 + MPMX19_05370 0.43 -0.7 43,617 - MPMX19_05370 0.43 +1.0 43,617 - MPMX19_05370 0.43 +1.5 43,617 - MPMX19_05370 0.43 -0.1 43,617 - MPMX19_05370 0.43 -0.9 43,617 - MPMX19_05370 0.43 -1.9 43,617 - MPMX19_05370 0.43 -1.0 43,617 - MPMX19_05370 0.43 +1.5 43,617 - MPMX19_05370 0.43 -1.7 43,617 - MPMX19_05370 0.43 -1.1 43,617 - MPMX19_05370 0.43 +0.8 43,617 - MPMX19_05370 0.43 -0.1 43,646 + MPMX19_05370 0.48 -0.9 43,646 + MPMX19_05370 0.48 -0.5 43,647 - MPMX19_05370 0.48 -1.0 43,647 - MPMX19_05370 0.48 -1.1 43,647 - MPMX19_05370 0.48 +0.5 43,727 + MPMX19_05370 0.61 +0.6 43,727 + MPMX19_05370 0.61 -0.1 43,727 + MPMX19_05370 0.61 -0.3 43,727 + MPMX19_05370 0.61 -0.9 43,727 + MPMX19_05370 0.61 +0.5 43,727 + MPMX19_05370 0.61 -1.1 43,727 + MPMX19_05370 0.61 +0.5 43,728 - MPMX19_05370 0.61 -1.5 43,728 - MPMX19_05370 0.61 +0.1 43,728 - MPMX19_05370 0.61 -1.0 43,728 - MPMX19_05370 0.61 -0.3 43,884 - MPMX19_05370 0.87 -0.1 43,884 - MPMX19_05370 0.87 -0.4 43,884 - MPMX19_05370 0.87 -0.7 43,884 - MPMX19_05370 0.87 -0.7
Or see this region's nucleotide sequence