Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05248

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05247 and MPMX19_05248 are separated by 126 nucleotidesMPMX19_05248 and MPMX19_05249 overlap by 4 nucleotidesMPMX19_05249 and MPMX19_05250 overlap by 4 nucleotides MPMX19_05247: MPMX19_05247 - Molybdenum cofactor guanylyltransferase, at 777,063 to 778,721 _05247 MPMX19_05248: MPMX19_05248 - hypothetical protein, at 778,848 to 779,564 _05248 MPMX19_05249: MPMX19_05249 - hypothetical protein, at 779,561 to 779,890 _05249 MPMX19_05250: MPMX19_05250 - hypothetical protein, at 779,887 to 781,104 _05250 Position (kb) 778 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 778.762 kb on - strandat 778.762 kb on - strandat 778.820 kb on + strandat 778.820 kb on + strandat 778.821 kb on - strandat 778.821 kb on - strandat 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.047 kb on + strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.048 kb on - strand, within MPMX19_05248at 779.245 kb on + strand, within MPMX19_05248at 779.245 kb on + strand, within MPMX19_05248at 779.245 kb on + strand, within MPMX19_05248at 779.245 kb on + strand, within MPMX19_05248at 779.246 kb on - strand, within MPMX19_05248at 779.489 kb on + strand, within MPMX19_05248at 779.490 kb on - strand, within MPMX19_05248at 779.490 kb on - strand, within MPMX19_05248at 779.490 kb on - strand, within MPMX19_05248at 779.490 kb on - strand, within MPMX19_05248at 779.580 kb on + strandat 779.580 kb on + strandat 779.580 kb on + strandat 779.580 kb on + strandat 779.580 kb on + strandat 779.580 kb on + strandat 779.580 kb on + strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 779.581 kb on - strandat 780.162 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.172 kb on + strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.173 kb on - strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.313 kb on + strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.314 kb on - strand, within MPMX19_05250at 780.416 kb on + strand, within MPMX19_05250at 780.417 kb on - strand, within MPMX19_05250

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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778,762 - -1.3
778,762 - -0.3
778,820 + -1.1
778,820 + -0.6
778,821 - +1.2
778,821 - -1.6
779,047 + MPMX19_05248 0.28 -0.8
779,047 + MPMX19_05248 0.28 +0.2
779,047 + MPMX19_05248 0.28 +0.7
779,047 + MPMX19_05248 0.28 +0.7
779,047 + MPMX19_05248 0.28 +0.2
779,047 + MPMX19_05248 0.28 -0.3
779,047 + MPMX19_05248 0.28 -1.6
779,047 + MPMX19_05248 0.28 +1.7
779,047 + MPMX19_05248 0.28 -0.3
779,047 + MPMX19_05248 0.28 -0.4
779,047 + MPMX19_05248 0.28 +2.0
779,047 + MPMX19_05248 0.28 -0.4
779,047 + MPMX19_05248 0.28 +0.2
779,047 + MPMX19_05248 0.28 +0.7
779,048 - MPMX19_05248 0.28 +1.3
779,048 - MPMX19_05248 0.28 -0.6
779,048 - MPMX19_05248 0.28 +0.6
779,048 - MPMX19_05248 0.28 -1.8
779,048 - MPMX19_05248 0.28 +1.1
779,048 - MPMX19_05248 0.28 +0.2
779,048 - MPMX19_05248 0.28 -0.3
779,048 - MPMX19_05248 0.28 +0.1
779,048 - MPMX19_05248 0.28 -1.7
779,048 - MPMX19_05248 0.28 +2.2
779,048 - MPMX19_05248 0.28 -0.6
779,048 - MPMX19_05248 0.28 -0.8
779,048 - MPMX19_05248 0.28 +0.7
779,048 - MPMX19_05248 0.28 +2.7
779,048 - MPMX19_05248 0.28 -0.3
779,245 + MPMX19_05248 0.55 +0.2
779,245 + MPMX19_05248 0.55 -0.1
779,245 + MPMX19_05248 0.55 +1.7
779,245 + MPMX19_05248 0.55 -0.8
779,246 - MPMX19_05248 0.56 +0.7
779,489 + MPMX19_05248 0.89 +0.4
779,490 - MPMX19_05248 0.90 +0.7
779,490 - MPMX19_05248 0.90 -0.5
779,490 - MPMX19_05248 0.90 +0.2
779,490 - MPMX19_05248 0.90 +1.7
779,580 + +0.7
779,580 + +0.8
779,580 + -1.3
779,580 + -0.7
779,580 + -0.3
779,580 + -1.2
779,580 + -0.3
779,581 - +0.4
779,581 - -0.6
779,581 - -2.0
779,581 - -0.3
779,581 - -0.6
779,581 - -0.3
779,581 - -0.3
779,581 - +0.4
780,162 + MPMX19_05250 0.23 -2.0
780,172 + MPMX19_05250 0.23 +0.7
780,172 + MPMX19_05250 0.23 -1.0
780,172 + MPMX19_05250 0.23 -0.8
780,172 + MPMX19_05250 0.23 +0.2
780,172 + MPMX19_05250 0.23 -0.6
780,172 + MPMX19_05250 0.23 -1.1
780,173 - MPMX19_05250 0.23 -2.3
780,173 - MPMX19_05250 0.23 -1.3
780,173 - MPMX19_05250 0.23 -1.1
780,173 - MPMX19_05250 0.23 -1.1
780,173 - MPMX19_05250 0.23 -2.8
780,173 - MPMX19_05250 0.23 -0.1
780,173 - MPMX19_05250 0.23 -1.5
780,313 + MPMX19_05250 0.35 -0.1
780,313 + MPMX19_05250 0.35 +1.0
780,313 + MPMX19_05250 0.35 -0.3
780,313 + MPMX19_05250 0.35 -0.7
780,313 + MPMX19_05250 0.35 -1.3
780,314 - MPMX19_05250 0.35 -0.4
780,314 - MPMX19_05250 0.35 +0.4
780,314 - MPMX19_05250 0.35 +0.2
780,314 - MPMX19_05250 0.35 +0.2
780,314 - MPMX19_05250 0.35 -0.3
780,416 + MPMX19_05250 0.43 -0.6
780,417 - MPMX19_05250 0.44 -0.4

Or see this region's nucleotide sequence