Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05237 and MPMX19_05238 are separated by 0 nucleotides MPMX19_05238 and MPMX19_05239 are separated by 46 nucleotides
MPMX19_05237: MPMX19_05237 - Sensor histidine kinase RcsC, at 763,651 to 766,338
_05237
MPMX19_05238: MPMX19_05238 - Periplasmic dipeptide transport protein, at 766,339 to 767,961
_05238
MPMX19_05239: MPMX19_05239 - hypothetical protein, at 768,008 to 769,462
_05239
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.935 kb on - strand, within MPMX19_05237 at 766.078 kb on + strand at 766.189 kb on + strand at 766.189 kb on + strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.191 kb on + strand at 766.192 kb on - strand at 766.294 kb on - strand at 766.448 kb on - strand at 766.591 kb on + strand, within MPMX19_05238 at 766.591 kb on + strand, within MPMX19_05238 at 766.592 kb on - strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.668 kb on + strand, within MPMX19_05238 at 766.669 kb on - strand, within MPMX19_05238 at 766.708 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.765 kb on + strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.772 kb on - strand, within MPMX19_05238 at 766.831 kb on - strand, within MPMX19_05238 at 766.962 kb on + strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.024 kb on - strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.597 kb on - strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.681 kb on - strand, within MPMX19_05238 at 767.809 kb on + strand at 767.906 kb on - strand at 767.963 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 768.392 kb on + strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.408 kb on - strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 765,850 + MPMX19_05237 0.82 +1.2 765,850 + MPMX19_05237 0.82 +0.7 765,850 + MPMX19_05237 0.82 -0.7 765,850 + MPMX19_05237 0.82 -0.6 765,850 + MPMX19_05237 0.82 -1.6 765,850 + MPMX19_05237 0.82 -1.2 765,851 - MPMX19_05237 0.82 -0.1 765,851 - MPMX19_05237 0.82 +1.7 765,851 - MPMX19_05237 0.82 -0.6 765,851 - MPMX19_05237 0.82 -0.6 765,851 - MPMX19_05237 0.82 -1.1 765,935 - MPMX19_05237 0.85 -0.3 766,078 + +1.2 766,189 + +0.2 766,189 + -0.6 766,190 - -0.6 766,190 - +0.3 766,190 - -2.0 766,191 + -2.6 766,192 - -0.8 766,294 - -1.1 766,448 - +0.4 766,591 + MPMX19_05238 0.16 +0.2 766,591 + MPMX19_05238 0.16 -0.3 766,592 - MPMX19_05238 0.16 -0.3 766,666 + MPMX19_05238 0.20 -0.9 766,666 + MPMX19_05238 0.20 -0.3 766,666 + MPMX19_05238 0.20 -0.6 766,666 + MPMX19_05238 0.20 -0.5 766,667 - MPMX19_05238 0.20 +0.4 766,667 - MPMX19_05238 0.20 +0.2 766,667 - MPMX19_05238 0.20 +1.0 766,667 - MPMX19_05238 0.20 -1.8 766,668 + MPMX19_05238 0.20 -1.2 766,669 - MPMX19_05238 0.20 -0.8 766,708 - MPMX19_05238 0.23 -0.6 766,747 - MPMX19_05238 0.25 -1.6 766,747 - MPMX19_05238 0.25 +0.4 766,747 - MPMX19_05238 0.25 -1.1 766,747 - MPMX19_05238 0.25 -1.1 766,765 + MPMX19_05238 0.26 -1.2 766,766 - MPMX19_05238 0.26 -0.9 766,766 - MPMX19_05238 0.26 -1.0 766,766 - MPMX19_05238 0.26 -0.1 766,766 - MPMX19_05238 0.26 -0.4 766,766 - MPMX19_05238 0.26 -0.3 766,771 + MPMX19_05238 0.27 -2.2 766,771 + MPMX19_05238 0.27 -1.3 766,771 + MPMX19_05238 0.27 +1.7 766,771 + MPMX19_05238 0.27 -0.5 766,771 + MPMX19_05238 0.27 +0.3 766,772 - MPMX19_05238 0.27 +0.2 766,831 - MPMX19_05238 0.30 -0.9 766,962 + MPMX19_05238 0.38 -1.3 766,963 - MPMX19_05238 0.38 +0.2 766,963 - MPMX19_05238 0.38 +0.4 766,999 + MPMX19_05238 0.41 -0.8 766,999 + MPMX19_05238 0.41 +0.7 766,999 + MPMX19_05238 0.41 -0.6 766,999 + MPMX19_05238 0.41 -1.3 766,999 + MPMX19_05238 0.41 -0.5 767,000 - MPMX19_05238 0.41 -1.0 767,000 - MPMX19_05238 0.41 -1.0 767,000 - MPMX19_05238 0.41 -1.3 767,000 - MPMX19_05238 0.41 -1.4 767,000 - MPMX19_05238 0.41 -1.3 767,000 - MPMX19_05238 0.41 -1.1 767,000 - MPMX19_05238 0.41 -0.3 767,000 - MPMX19_05238 0.41 +0.2 767,023 + MPMX19_05238 0.42 +0.6 767,023 + MPMX19_05238 0.42 +0.4 767,023 + MPMX19_05238 0.42 -2.0 767,023 + MPMX19_05238 0.42 -0.1 767,023 + MPMX19_05238 0.42 -0.6 767,024 - MPMX19_05238 0.42 -0.8 767,077 + MPMX19_05238 0.45 +0.7 767,077 + MPMX19_05238 0.45 -0.7 767,077 + MPMX19_05238 0.45 +0.2 767,077 + MPMX19_05238 0.45 -1.4 767,077 + MPMX19_05238 0.45 -1.6 767,078 - MPMX19_05238 0.46 -1.7 767,078 - MPMX19_05238 0.46 -2.2 767,078 - MPMX19_05238 0.46 +1.2 767,227 + MPMX19_05238 0.55 -0.8 767,227 + MPMX19_05238 0.55 +0.2 767,227 + MPMX19_05238 0.55 -0.6 767,227 + MPMX19_05238 0.55 -0.8 767,227 + MPMX19_05238 0.55 -0.4 767,227 + MPMX19_05238 0.55 -0.3 767,227 + MPMX19_05238 0.55 -0.4 767,227 + MPMX19_05238 0.55 -0.3 767,227 + MPMX19_05238 0.55 -0.2 767,228 - MPMX19_05238 0.55 -0.1 767,228 - MPMX19_05238 0.55 -2.2 767,228 - MPMX19_05238 0.55 -1.2 767,228 - MPMX19_05238 0.55 +0.7 767,228 - MPMX19_05238 0.55 +0.4 767,228 - MPMX19_05238 0.55 -0.2 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 -0.2 767,228 - MPMX19_05238 0.55 +1.7 767,228 - MPMX19_05238 0.55 +0.4 767,228 - MPMX19_05238 0.55 +0.7 767,228 - MPMX19_05238 0.55 -1.7 767,228 - MPMX19_05238 0.55 -2.3 767,228 - MPMX19_05238 0.55 +0.5 767,229 + MPMX19_05238 0.55 -0.8 767,229 + MPMX19_05238 0.55 +0.0 767,229 + MPMX19_05238 0.55 -1.6 767,229 + MPMX19_05238 0.55 +1.3 767,229 + MPMX19_05238 0.55 -0.8 767,229 + MPMX19_05238 0.55 +0.2 767,229 + MPMX19_05238 0.55 -0.8 767,229 + MPMX19_05238 0.55 -1.3 767,230 - MPMX19_05238 0.55 -0.3 767,230 - MPMX19_05238 0.55 +0.6 767,230 - MPMX19_05238 0.55 +0.2 767,230 - MPMX19_05238 0.55 +1.3 767,230 - MPMX19_05238 0.55 -1.4 767,230 - MPMX19_05238 0.55 -0.6 767,230 - MPMX19_05238 0.55 -1.8 767,230 - MPMX19_05238 0.55 +0.7 767,230 - MPMX19_05238 0.55 +0.7 767,230 - MPMX19_05238 0.55 -0.3 767,230 - MPMX19_05238 0.55 +0.7 767,326 + MPMX19_05238 0.61 +0.0 767,326 + MPMX19_05238 0.61 -0.8 767,326 + MPMX19_05238 0.61 -0.1 767,380 + MPMX19_05238 0.64 -0.8 767,380 + MPMX19_05238 0.64 -0.6 767,380 + MPMX19_05238 0.64 -0.8 767,380 + MPMX19_05238 0.64 -0.3 767,380 + MPMX19_05238 0.64 -0.8 767,380 + MPMX19_05238 0.64 -1.6 767,380 + MPMX19_05238 0.64 +0.7 767,380 + MPMX19_05238 0.64 -0.4 767,380 + MPMX19_05238 0.64 -1.6 767,380 + MPMX19_05238 0.64 +0.5 767,381 - MPMX19_05238 0.64 -0.3 767,381 - MPMX19_05238 0.64 -0.1 767,381 - MPMX19_05238 0.64 -1.7 767,381 - MPMX19_05238 0.64 +1.0 767,381 - MPMX19_05238 0.64 +1.7 767,381 - MPMX19_05238 0.64 -0.6 767,381 - MPMX19_05238 0.64 -0.8 767,381 - MPMX19_05238 0.64 -0.6 767,381 - MPMX19_05238 0.64 -1.1 767,381 - MPMX19_05238 0.64 +0.2 767,381 - MPMX19_05238 0.64 +0.2 767,381 - MPMX19_05238 0.64 -1.7 767,479 + MPMX19_05238 0.70 -0.3 767,479 + MPMX19_05238 0.70 +0.4 767,479 + MPMX19_05238 0.70 -1.1 767,480 - MPMX19_05238 0.70 -2.0 767,480 - MPMX19_05238 0.70 -0.6 767,480 - MPMX19_05238 0.70 -2.0 767,480 - MPMX19_05238 0.70 +1.2 767,480 - MPMX19_05238 0.70 -1.0 767,500 + MPMX19_05238 0.72 +0.7 767,500 + MPMX19_05238 0.72 +0.9 767,500 + MPMX19_05238 0.72 -1.1 767,501 - MPMX19_05238 0.72 -1.4 767,501 - MPMX19_05238 0.72 -0.5 767,501 - MPMX19_05238 0.72 -0.3 767,501 - MPMX19_05238 0.72 -0.3 767,596 + MPMX19_05238 0.77 -0.7 767,596 + MPMX19_05238 0.77 -1.1 767,596 + MPMX19_05238 0.77 -0.6 767,597 - MPMX19_05238 0.78 -1.4 767,638 + MPMX19_05238 0.80 -1.3 767,638 + MPMX19_05238 0.80 -1.3 767,638 + MPMX19_05238 0.80 -1.8 767,638 + MPMX19_05238 0.80 -0.6 767,638 + MPMX19_05238 0.80 -0.4 767,639 - MPMX19_05238 0.80 -0.0 767,639 - MPMX19_05238 0.80 -1.7 767,639 - MPMX19_05238 0.80 -0.6 767,680 + MPMX19_05238 0.83 -1.2 767,680 + MPMX19_05238 0.83 -1.8 767,680 + MPMX19_05238 0.83 -1.1 767,681 - MPMX19_05238 0.83 -2.3 767,809 + -0.6 767,906 - -1.8 767,963 + +0.2 767,971 + -0.4 767,971 + +0.7 767,971 + -1.7 767,971 + -0.4 767,971 + -0.6 767,971 + +0.7 767,972 - +0.2 767,972 - -0.3 767,972 - -0.8 767,972 - -2.0 767,972 - +1.0 768,392 + MPMX19_05239 0.26 -1.4 768,393 - MPMX19_05239 0.26 +0.3 768,393 - MPMX19_05239 0.26 -0.1 768,393 - MPMX19_05239 0.26 +1.0 768,407 + MPMX19_05239 0.27 -0.6 768,407 + MPMX19_05239 0.27 -1.5 768,407 + MPMX19_05239 0.27 +0.7 768,408 - MPMX19_05239 0.27 -1.3 768,626 + MPMX19_05239 0.42 +0.3 768,626 + MPMX19_05239 0.42 +0.2 768,626 + MPMX19_05239 0.42 -2.6 768,626 + MPMX19_05239 0.42 -1.1 768,626 + MPMX19_05239 0.42 -1.1 768,626 + MPMX19_05239 0.42 +0.4 768,626 + MPMX19_05239 0.42 +0.2 768,626 + MPMX19_05239 0.42 +0.2 768,626 + MPMX19_05239 0.42 +0.2 768,626 + MPMX19_05239 0.42 +0.2 768,627 - MPMX19_05239 0.43 -1.4 768,627 - MPMX19_05239 0.43 -1.4 768,627 - MPMX19_05239 0.43 +1.7 768,627 - MPMX19_05239 0.43 -0.4 768,627 - MPMX19_05239 0.43 -2.1 768,627 - MPMX19_05239 0.43 -0.7 768,627 - MPMX19_05239 0.43 -0.6 768,627 - MPMX19_05239 0.43 -0.6 768,648 - MPMX19_05239 0.44 +0.2 768,648 - MPMX19_05239 0.44 -1.1 768,648 - MPMX19_05239 0.44 +0.3
Or see this region's nucleotide sequence