Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05189 and MPMX19_05190 are separated by 49 nucleotides MPMX19_05190 and MPMX19_05191 are separated by 27 nucleotides
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
MPMX19_05190: MPMX19_05190 - putative malonic semialdehyde reductase RutE, at 693,510 to 694,142
_05190
MPMX19_05191: MPMX19_05191 - Phenylacetate-coenzyme A ligase, at 694,170 to 695,504
_05191
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1 at 692.557 kb on - strand, within MPMX19_05189 at 692.557 kb on - strand, within MPMX19_05189 at 692.905 kb on - strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.971 kb on - strand, within MPMX19_05189 at 693.709 kb on + strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.791 kb on - strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.835 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.988 kb on + strand, within MPMX19_05190 at 693.989 kb on - strand, within MPMX19_05190 at 694.127 kb on + strand at 694.128 kb on - strand at 694.128 kb on - strand at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.686 kb on - strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.762 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.765 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.771 kb on + strand, within MPMX19_05191 at 694.772 kb on + strand, within MPMX19_05191 at 695.084 kb on - strand, within MPMX19_05191
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 692,557 - MPMX19_05189 0.14 +0.7 692,557 - MPMX19_05189 0.14 -0.4 692,905 - MPMX19_05189 0.47 -0.8 692,970 + MPMX19_05189 0.53 +1.7 692,970 + MPMX19_05189 0.53 -0.6 692,971 - MPMX19_05189 0.53 +0.3 693,709 + MPMX19_05190 0.31 +0.2 693,791 - MPMX19_05190 0.44 -2.6 693,791 - MPMX19_05190 0.44 -2.0 693,791 - MPMX19_05190 0.44 -1.3 693,791 - MPMX19_05190 0.44 +0.2 693,835 + MPMX19_05190 0.51 -1.6 693,835 + MPMX19_05190 0.51 -1.1 693,835 + MPMX19_05190 0.51 -0.3 693,835 + MPMX19_05190 0.51 -0.6 693,835 + MPMX19_05190 0.51 -1.4 693,835 + MPMX19_05190 0.51 -1.6 693,835 + MPMX19_05190 0.51 -0.8 693,835 + MPMX19_05190 0.51 -0.7 693,988 + MPMX19_05190 0.76 -0.8 693,988 + MPMX19_05190 0.76 +0.2 693,989 - MPMX19_05190 0.76 -0.3 694,127 + +1.2 694,128 - +1.7 694,128 - -0.3 694,686 - MPMX19_05191 0.39 -2.3 694,686 - MPMX19_05191 0.39 +0.9 694,686 - MPMX19_05191 0.39 +0.7 694,762 + MPMX19_05191 0.44 +1.3 694,762 + MPMX19_05191 0.44 +0.2 694,765 + MPMX19_05191 0.45 +1.2 694,765 + MPMX19_05191 0.45 +0.2 694,765 + MPMX19_05191 0.45 -0.6 694,771 + MPMX19_05191 0.45 -1.1 694,771 + MPMX19_05191 0.45 -1.1 694,771 + MPMX19_05191 0.45 -1.8 694,772 + MPMX19_05191 0.45 +0.7 695,084 - MPMX19_05191 0.68 -1.3
Or see this region's nucleotide sequence