Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05084

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05081 and MPMX19_05082 are separated by 66 nucleotidesMPMX19_05082 and MPMX19_05083 are separated by 85 nucleotidesMPMX19_05083 and MPMX19_05084 overlap by 1 nucleotidesMPMX19_05084 and MPMX19_05085 are separated by 22 nucleotidesMPMX19_05085 and MPMX19_05086 are separated by 225 nucleotides MPMX19_05081: MPMX19_05081 - Sensor histidine kinase RcsC, at 570,409 to 572,814 _05081 MPMX19_05082: MPMX19_05082 - hypothetical protein, at 572,881 to 573,255 _05082 MPMX19_05083: MPMX19_05083 - hypothetical protein, at 573,341 to 573,610 _05083 MPMX19_05084: MPMX19_05084 - hypothetical protein, at 573,610 to 573,885 _05084 MPMX19_05085: MPMX19_05085 - hypothetical protein, at 573,908 to 574,333 _05085 MPMX19_05086: MPMX19_05086 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 574,559 to 575,728 _05086 Position (kb) 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 572.728 kb on + strandat 572.860 kb on + strandat 572.860 kb on + strandat 572.860 kb on + strandat 572.861 kb on - strandat 572.861 kb on - strandat 572.904 kb on + strandat 572.904 kb on + strandat 573.154 kb on + strand, within MPMX19_05082at 573.154 kb on + strand, within MPMX19_05082at 573.154 kb on + strand, within MPMX19_05082at 573.155 kb on - strand, within MPMX19_05082at 573.155 kb on - strand, within MPMX19_05082at 573.155 kb on - strand, within MPMX19_05082at 573.155 kb on - strand, within MPMX19_05082at 573.286 kb on + strandat 573.287 kb on - strandat 573.287 kb on - strandat 573.287 kb on - strandat 573.287 kb on - strandat 573.365 kb on + strandat 573.366 kb on - strandat 573.366 kb on - strandat 573.366 kb on - strandat 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.419 kb on + strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.420 kb on - strand, within MPMX19_05083at 573.584 kb on + strandat 573.584 kb on + strandat 573.658 kb on + strand, within MPMX19_05084at 573.659 kb on - strand, within MPMX19_05084at 573.659 kb on - strand, within MPMX19_05084at 573.659 kb on - strand, within MPMX19_05084at 573.720 kb on + strand, within MPMX19_05084at 573.720 kb on + strand, within MPMX19_05084at 573.721 kb on - strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.808 kb on + strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.809 kb on - strand, within MPMX19_05084at 573.890 kb on + strandat 573.891 kb on - strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.909 kb on + strandat 573.910 kb on - strandat 573.910 kb on - strandat 573.910 kb on - strandat 573.910 kb on - strandat 573.910 kb on - strandat 574.020 kb on + strand, within MPMX19_05085at 574.020 kb on + strand, within MPMX19_05085at 574.021 kb on - strand, within MPMX19_05085at 574.047 kb on + strand, within MPMX19_05085at 574.048 kb on - strand, within MPMX19_05085at 574.048 kb on - strand, within MPMX19_05085at 574.059 kb on + strand, within MPMX19_05085at 574.060 kb on - strand, within MPMX19_05085at 574.060 kb on - strand, within MPMX19_05085at 574.060 kb on - strand, within MPMX19_05085at 574.072 kb on - strand, within MPMX19_05085at 574.074 kb on + strand, within MPMX19_05085at 574.074 kb on + strand, within MPMX19_05085at 574.074 kb on + strand, within MPMX19_05085at 574.074 kb on + strand, within MPMX19_05085at 574.074 kb on + strand, within MPMX19_05085at 574.075 kb on - strand, within MPMX19_05085at 574.075 kb on - strand, within MPMX19_05085at 574.089 kb on + strand, within MPMX19_05085at 574.090 kb on - strand, within MPMX19_05085at 574.362 kb on - strandat 574.456 kb on + strandat 574.456 kb on + strandat 574.467 kb on + strandat 574.468 kb on - strandat 574.468 kb on - strandat 574.502 kb on - strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.661 kb on + strandat 574.662 kb on - strandat 574.662 kb on - strandat 574.662 kb on - strandat 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.763 kb on + strand, within MPMX19_05086at 574.764 kb on - strand, within MPMX19_05086at 574.764 kb on - strand, within MPMX19_05086at 574.764 kb on - strand, within MPMX19_05086at 574.764 kb on - strand, within MPMX19_05086at 574.764 kb on - strand, within MPMX19_05086at 574.765 kb on + strand, within MPMX19_05086at 574.765 kb on + strand, within MPMX19_05086at 574.766 kb on - strand, within MPMX19_05086at 574.766 kb on - strand, within MPMX19_05086at 574.766 kb on - strand, within MPMX19_05086

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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572,728 + -1.2
572,860 + +0.1
572,860 + -0.5
572,860 + -1.9
572,861 - -0.5
572,861 - -1.3
572,904 + -1.9
572,904 + -0.2
573,154 + MPMX19_05082 0.73 +0.2
573,154 + MPMX19_05082 0.73 +0.2
573,154 + MPMX19_05082 0.73 +3.1
573,155 - MPMX19_05082 0.73 +0.2
573,155 - MPMX19_05082 0.73 -0.1
573,155 - MPMX19_05082 0.73 +1.1
573,155 - MPMX19_05082 0.73 +0.8
573,286 + -2.0
573,287 - -1.0
573,287 - -0.9
573,287 - +1.8
573,287 - -1.7
573,365 + +0.8
573,366 - -1.5
573,366 - -0.9
573,366 - -1.5
573,419 + MPMX19_05083 0.29 -1.7
573,419 + MPMX19_05083 0.29 +0.2
573,419 + MPMX19_05083 0.29 -1.5
573,419 + MPMX19_05083 0.29 -1.0
573,419 + MPMX19_05083 0.29 +0.8
573,419 + MPMX19_05083 0.29 -0.5
573,419 + MPMX19_05083 0.29 -2.1
573,419 + MPMX19_05083 0.29 -1.4
573,419 + MPMX19_05083 0.29 -0.5
573,419 + MPMX19_05083 0.29 +1.0
573,420 - MPMX19_05083 0.29 -0.2
573,420 - MPMX19_05083 0.29 +0.8
573,420 - MPMX19_05083 0.29 -1.5
573,420 - MPMX19_05083 0.29 -2.3
573,420 - MPMX19_05083 0.29 -0.8
573,420 - MPMX19_05083 0.29 +0.4
573,420 - MPMX19_05083 0.29 +0.6
573,584 + -1.4
573,584 + -0.7
573,658 + MPMX19_05084 0.17 -0.9
573,659 - MPMX19_05084 0.18 +0.4
573,659 - MPMX19_05084 0.18 -0.8
573,659 - MPMX19_05084 0.18 +0.5
573,720 + MPMX19_05084 0.40 +0.6
573,720 + MPMX19_05084 0.40 +0.8
573,721 - MPMX19_05084 0.40 -0.4
573,808 + MPMX19_05084 0.72 -1.2
573,808 + MPMX19_05084 0.72 -1.0
573,808 + MPMX19_05084 0.72 +0.7
573,808 + MPMX19_05084 0.72 -1.2
573,808 + MPMX19_05084 0.72 -1.0
573,808 + MPMX19_05084 0.72 -0.4
573,808 + MPMX19_05084 0.72 -0.3
573,808 + MPMX19_05084 0.72 -0.4
573,808 + MPMX19_05084 0.72 +0.5
573,808 + MPMX19_05084 0.72 -0.2
573,809 - MPMX19_05084 0.72 -0.0
573,809 - MPMX19_05084 0.72 +0.5
573,809 - MPMX19_05084 0.72 -0.2
573,809 - MPMX19_05084 0.72 -0.8
573,809 - MPMX19_05084 0.72 -0.2
573,809 - MPMX19_05084 0.72 -0.0
573,809 - MPMX19_05084 0.72 -1.0
573,809 - MPMX19_05084 0.72 -0.0
573,809 - MPMX19_05084 0.72 -0.4
573,809 - MPMX19_05084 0.72 -0.2
573,809 - MPMX19_05084 0.72 +1.2
573,809 - MPMX19_05084 0.72 -0.5
573,890 + +0.2
573,891 - -0.2
573,909 + +0.8
573,909 + -1.4
573,909 + -1.5
573,909 + -1.2
573,909 + -0.5
573,909 + -0.1
573,909 + +0.5
573,909 + -2.1
573,910 - -0.8
573,910 - +0.5
573,910 - -0.5
573,910 - -0.2
573,910 - -0.5
574,020 + MPMX19_05085 0.26 -0.6
574,020 + MPMX19_05085 0.26 -0.2
574,021 - MPMX19_05085 0.27 +0.3
574,047 + MPMX19_05085 0.33 -0.2
574,048 - MPMX19_05085 0.33 +1.4
574,048 - MPMX19_05085 0.33 +0.8
574,059 + MPMX19_05085 0.35 -1.0
574,060 - MPMX19_05085 0.36 -0.6
574,060 - MPMX19_05085 0.36 +1.4
574,060 - MPMX19_05085 0.36 -0.8
574,072 - MPMX19_05085 0.38 +0.8
574,074 + MPMX19_05085 0.39 -0.4
574,074 + MPMX19_05085 0.39 +0.2
574,074 + MPMX19_05085 0.39 -0.5
574,074 + MPMX19_05085 0.39 -0.2
574,074 + MPMX19_05085 0.39 -0.2
574,075 - MPMX19_05085 0.39 -0.2
574,075 - MPMX19_05085 0.39 +0.8
574,089 + MPMX19_05085 0.42 -0.3
574,090 - MPMX19_05085 0.43 -0.6
574,362 - +0.2
574,456 + -1.2
574,456 + -0.8
574,467 + -0.0
574,468 - -1.1
574,468 - -0.8
574,502 - -1.4
574,661 + -0.2
574,661 + -1.0
574,661 + -1.4
574,661 + +1.0
574,661 + -2.0
574,661 + -0.6
574,661 + -2.8
574,662 - +1.1
574,662 - +0.4
574,662 - -1.8
574,763 + MPMX19_05086 0.17 -1.0
574,763 + MPMX19_05086 0.17 -0.5
574,763 + MPMX19_05086 0.17 -0.8
574,763 + MPMX19_05086 0.17 -0.8
574,763 + MPMX19_05086 0.17 -0.4
574,763 + MPMX19_05086 0.17 -0.6
574,763 + MPMX19_05086 0.17 -1.6
574,763 + MPMX19_05086 0.17 -1.7
574,763 + MPMX19_05086 0.17 -0.2
574,763 + MPMX19_05086 0.17 -0.2
574,763 + MPMX19_05086 0.17 +0.9
574,764 - MPMX19_05086 0.18 +0.2
574,764 - MPMX19_05086 0.18 +0.3
574,764 - MPMX19_05086 0.18 -0.6
574,764 - MPMX19_05086 0.18 -1.7
574,764 - MPMX19_05086 0.18 +0.7
574,765 + MPMX19_05086 0.18 -1.7
574,765 + MPMX19_05086 0.18 -0.2
574,766 - MPMX19_05086 0.18 +0.8
574,766 - MPMX19_05086 0.18 -1.2
574,766 - MPMX19_05086 0.18 +1.8

Or see this region's nucleotide sequence