Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04183

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	NF_with10percent_fullN
				remove
509,604	+	MPMX19_04182	0.89	-0.8
509,604	+	MPMX19_04182	0.89	-0.4
509,604	+	MPMX19_04182	0.89	-0.2
509,604	+	MPMX19_04182	0.89	-1.0
509,604	+	MPMX19_04182	0.89	-0.0
509,604	+	MPMX19_04182	0.89	+1.0
509,604	+	MPMX19_04182	0.89	-0.4
509,604	+	MPMX19_04182	0.89	-0.0
509,604	+	MPMX19_04182	0.89	+0.5
509,604	+	MPMX19_04182	0.89	-0.8
509,604	+	MPMX19_04182	0.89	+2.0
509,604	+	MPMX19_04182	0.89	-0.4
509,604	+	MPMX19_04182	0.89	-0.0
509,604	+	MPMX19_04182	0.89	-0.8
509,604	+	MPMX19_04182	0.89	-0.6
509,605	-	MPMX19_04182	0.89	-0.4
509,605	-	MPMX19_04182	0.89	-0.0
509,605	-	MPMX19_04182	0.89	-1.9
509,605	-	MPMX19_04182	0.89	+1.2
509,605	-	MPMX19_04182	0.89	+0.2
509,605	-	MPMX19_04182	0.89	-1.0
509,605	-	MPMX19_04182	0.89	-0.4
509,616	+	MPMX19_04182	0.90	-2.2
509,616	+	MPMX19_04182	0.90	-1.2
509,616	+	MPMX19_04182	0.90	-1.0
509,616	+	MPMX19_04182	0.90	-1.3
509,616	+	MPMX19_04182	0.90	+1.6
509,616	+	MPMX19_04182	0.90	-0.0
509,617	-	MPMX19_04182	0.90	-0.8
509,617	-	MPMX19_04182	0.90	-1.0
509,617	-	MPMX19_04182	0.90	-0.2
509,617	-	MPMX19_04182	0.90	-1.0
509,617	-	MPMX19_04182	0.90	+1.0
509,767	+			-2.2
509,778	-			-1.0
509,829	+			-0.8
509,830	-			-0.8
509,830	-			-0.7
509,846	+			-1.9
509,846	+			+1.6
509,846	+			-0.0
509,846	+			-1.1
509,847	-			+0.6
509,847	-			-0.9
509,847	-			+0.8
509,876	+			-0.6
510,006	+			+0.3
510,087	+			-2.8
510,087	+			-1.4
510,087	+			-1.7
510,087	+			-1.2
510,087	+			-1.8
510,087	+			-0.8
510,087	+			-2.0
510,087	+			-2.7
510,087	+			-2.4
510,087	+			+0.4
510,087	+			-0.2
510,087	+			-1.0
510,087	+			-1.2
510,087	+			-0.5
510,088	-			+0.6
510,088	-			-1.2
510,088	-			-0.0
510,088	-			-0.8
510,088	-			-1.0
510,088	-			-0.1
510,088	-			-0.8
510,088	-			-0.8
510,088	-			+0.6
510,088	-			+0.4
510,088	-			+0.2
510,088	-			-1.4
510,088	-			+0.2
510,225	+	MPMX19_04183	0.15	-2.2
510,225	+	MPMX19_04183	0.15	+0.2
510,225	+	MPMX19_04183	0.15	-0.2
510,225	+	MPMX19_04183	0.15	-2.8
510,225	+	MPMX19_04183	0.15	+0.6
510,225	+	MPMX19_04183	0.15	+1.2
510,225	+	MPMX19_04183	0.15	-0.0
510,225	+	MPMX19_04183	0.15	+1.2
510,225	+	MPMX19_04183	0.15	-0.4
510,225	+	MPMX19_04183	0.15	-0.7
510,225	+	MPMX19_04183	0.15	-0.4
510,225	+	MPMX19_04183	0.15	-0.1
510,225	+	MPMX19_04183	0.15	-2.4
510,225	+	MPMX19_04183	0.15	-0.0
510,225	+	MPMX19_04183	0.15	-1.1
510,225	+	MPMX19_04183	0.15	-0.9
510,225	+	MPMX19_04183	0.15	-0.8
510,225	+	MPMX19_04183	0.15	-1.1
510,225	+	MPMX19_04183	0.15	-1.4
510,225	+	MPMX19_04183	0.15	+0.6
510,225	+	MPMX19_04183	0.15	+0.8
510,226	-	MPMX19_04183	0.15	+0.2
510,226	-	MPMX19_04183	0.15	-1.4
510,226	-	MPMX19_04183	0.15	+0.1
510,226	-	MPMX19_04183	0.15	-1.1
510,226	-	MPMX19_04183	0.15	-0.0
510,226	-	MPMX19_04183	0.15	-1.2
510,226	-	MPMX19_04183	0.15	-0.4
510,226	-	MPMX19_04183	0.15	-0.0
510,226	-	MPMX19_04183	0.15	-0.2
510,226	-	MPMX19_04183	0.15	-2.6
510,226	-	MPMX19_04183	0.15	-0.0
510,226	-	MPMX19_04183	0.15	-0.3
510,354	+	MPMX19_04183	0.24	-0.4
510,354	+	MPMX19_04183	0.24	+0.7
510,354	+	MPMX19_04183	0.24	+1.6
510,354	+	MPMX19_04183	0.24	-0.9
510,354	+	MPMX19_04183	0.24	-1.8
510,354	+	MPMX19_04183	0.24	-0.4
510,354	+	MPMX19_04183	0.24	-1.3
510,354	+	MPMX19_04183	0.24	-1.4
510,354	+	MPMX19_04183	0.24	-1.0
510,354	+	MPMX19_04183	0.24	-2.4
510,355	-	MPMX19_04183	0.24	-0.8
510,355	-	MPMX19_04183	0.24	-1.1
510,355	-	MPMX19_04183	0.24	-1.0
510,355	-	MPMX19_04183	0.24	-2.2
510,355	-	MPMX19_04183	0.24	-0.8
510,355	-	MPMX19_04183	0.24	+0.2
510,355	-	MPMX19_04183	0.24	-2.0
510,355	-	MPMX19_04183	0.24	+1.6
510,355	-	MPMX19_04183	0.24	+0.6
510,355	-	MPMX19_04183	0.24	+2.0
510,363	+	MPMX19_04183	0.25	-1.1
510,363	+	MPMX19_04183	0.25	-1.6
510,363	+	MPMX19_04183	0.25	-0.9
510,363	+	MPMX19_04183	0.25	+0.6
510,363	+	MPMX19_04183	0.25	-0.8
510,363	+	MPMX19_04183	0.25	+2.0
510,363	+	MPMX19_04183	0.25	+0.3
510,363	+	MPMX19_04183	0.25	-0.7
510,363	+	MPMX19_04183	0.25	-1.0
510,363	+	MPMX19_04183	0.25	-0.4
510,363	+	MPMX19_04183	0.25	-0.6
510,363	+	MPMX19_04183	0.25	+0.6
510,363	+	MPMX19_04183	0.25	+1.6
510,363	+	MPMX19_04183	0.25	-1.2
510,363	+	MPMX19_04183	0.25	-0.2
510,363	+	MPMX19_04183	0.25	-0.8
510,363	+	MPMX19_04183	0.25	-0.8
510,363	+	MPMX19_04183	0.25	-1.4
510,363	+	MPMX19_04183	0.25	-1.2
510,363	+	MPMX19_04183	0.25	-2.3
510,363	+	MPMX19_04183	0.25	-0.2
510,363	+	MPMX19_04183	0.25	-0.8
510,363	+	MPMX19_04183	0.25	+0.8
510,364	-	MPMX19_04183	0.25	-1.1
510,364	-	MPMX19_04183	0.25	+0.2
510,364	-	MPMX19_04183	0.25	-0.2
510,364	-	MPMX19_04183	0.25	-0.3
510,364	-	MPMX19_04183	0.25	+0.8
510,364	-	MPMX19_04183	0.25	+1.6
510,364	-	MPMX19_04183	0.25	-0.4
510,364	-	MPMX19_04183	0.25	-0.5
510,364	-	MPMX19_04183	0.25	-0.6
510,364	-	MPMX19_04183	0.25	-1.0
510,364	-	MPMX19_04183	0.25	+0.6
510,364	-	MPMX19_04183	0.25	+1.0
510,364	-	MPMX19_04183	0.25	-0.3
510,364	-	MPMX19_04183	0.25	-0.5
510,364	-	MPMX19_04183	0.25	+0.6
510,364	-	MPMX19_04183	0.25	-1.2
510,364	-	MPMX19_04183	0.25	+0.6
510,364	-	MPMX19_04183	0.25	-0.5
510,364	-	MPMX19_04183	0.25	-1.4
510,609	+	MPMX19_04183	0.42	-0.4
510,609	+	MPMX19_04183	0.42	+1.2
510,610	-	MPMX19_04183	0.42	+0.6
510,610	-	MPMX19_04183	0.42	+0.7
510,610	-	MPMX19_04183	0.42	-1.3
510,610	-	MPMX19_04183	0.42	-0.4
510,666	+	MPMX19_04183	0.46	-1.4
510,666	+	MPMX19_04183	0.46	+0.6
510,666	+	MPMX19_04183	0.46	-2.7
510,666	+	MPMX19_04183	0.46	-1.1
510,666	+	MPMX19_04183	0.46	-3.1
510,666	+	MPMX19_04183	0.46	-0.0
510,666	+	MPMX19_04183	0.46	+0.1
510,666	+	MPMX19_04183	0.46	-0.0
510,666	+	MPMX19_04183	0.46	-0.2
510,666	+	MPMX19_04183	0.46	-0.8
510,667	-	MPMX19_04183	0.46	+0.6
510,667	-	MPMX19_04183	0.46	-1.6
510,667	-	MPMX19_04183	0.46	-0.2
510,667	-	MPMX19_04183	0.46	-2.1
510,667	-	MPMX19_04183	0.46	+0.2
510,667	-	MPMX19_04183	0.46	-0.4
510,667	-	MPMX19_04183	0.46	-0.8
510,667	-	MPMX19_04183	0.46	-0.8
510,667	-	MPMX19_04183	0.46	-0.8
510,667	-	MPMX19_04183	0.46	-0.8
510,711	+	MPMX19_04183	0.49	-1.2
510,711	+	MPMX19_04183	0.49	-0.0
510,711	+	MPMX19_04183	0.49	-1.8
510,711	+	MPMX19_04183	0.49	+0.6
510,711	+	MPMX19_04183	0.49	+1.6
510,712	-	MPMX19_04183	0.49	-0.8
510,712	-	MPMX19_04183	0.49	-0.7
510,712	-	MPMX19_04183	0.49	-0.0
510,712	-	MPMX19_04183	0.49	-0.9
510,712	-	MPMX19_04183	0.49	-1.9
511,047	+	MPMX19_04183	0.72	+1.4
511,047	+	MPMX19_04183	0.72	-1.0
511,047	+	MPMX19_04183	0.72	+0.8
511,047	+	MPMX19_04183	0.72	-1.6
511,047	+	MPMX19_04183	0.72	+1.0
511,047	+	MPMX19_04183	0.72	+0.6
511,047	+	MPMX19_04183	0.72	-1.2
511,047	+	MPMX19_04183	0.72	-1.6
511,047	+	MPMX19_04183	0.72	-1.6
511,047	+	MPMX19_04183	0.72	+0.6
511,047	+	MPMX19_04183	0.72	-0.0
511,047	+	MPMX19_04183	0.72	+1.2
511,047	+	MPMX19_04183	0.72	+0.8
511,047	+	MPMX19_04183	0.72	+0.6
511,047	+	MPMX19_04183	0.72	+0.3
511,047	+	MPMX19_04183	0.72	+0.2
511,047	+	MPMX19_04183	0.72	-2.0
511,047	+	MPMX19_04183	0.72	-1.4
511,047	+	MPMX19_04183	0.72	+0.8
511,047	+	MPMX19_04183	0.72	+0.2
511,047	+	MPMX19_04183	0.72	+0.2
511,047	+	MPMX19_04183	0.72	-0.0
511,047	+	MPMX19_04183	0.72	-1.4
511,047	+	MPMX19_04183	0.72	-0.8
511,047	+	MPMX19_04183	0.72	-0.6
511,048	-	MPMX19_04183	0.72	+1.6
511,048	-	MPMX19_04183	0.72	-1.3
511,048	-	MPMX19_04183	0.72	-0.4
511,048	-	MPMX19_04183	0.72	-1.2
511,048	-	MPMX19_04183	0.72	+0.7
511,048	-	MPMX19_04183	0.72	-1.1
511,048	-	MPMX19_04183	0.72	-2.5
511,048	-	MPMX19_04183	0.72	+0.6
511,048	-	MPMX19_04183	0.72	+0.3
511,048	-	MPMX19_04183	0.72	+0.2
511,048	-	MPMX19_04183	0.72	-0.2
511,188	+	MPMX19_04183	0.81	-1.0
511,188	+	MPMX19_04183	0.81	-0.0
511,188	+	MPMX19_04183	0.81	-0.8
511,188	+	MPMX19_04183	0.81	-1.0
511,188	+	MPMX19_04183	0.81	-1.0
511,189	-	MPMX19_04183	0.82	+0.6
511,189	-	MPMX19_04183	0.82	-1.6
511,189	-	MPMX19_04183	0.82	-0.5
511,207	+	MPMX19_04183	0.83	-0.8
511,207	+	MPMX19_04183	0.83	-2.8
511,207	+	MPMX19_04183	0.83	-2.2
511,207	+	MPMX19_04183	0.83	-0.4
511,207	+	MPMX19_04183	0.83	+0.3
511,207	+	MPMX19_04183	0.83	+0.1
511,207	+	MPMX19_04183	0.83	-0.2
511,207	+	MPMX19_04183	0.83	-1.6
511,208	-	MPMX19_04183	0.83	-1.4
511,208	-	MPMX19_04183	0.83	+0.6
511,209	+	MPMX19_04183	0.83	-0.8
511,209	+	MPMX19_04183	0.83	-0.0
511,209	+	MPMX19_04183	0.83	-1.6
511,209	+	MPMX19_04183	0.83	-1.0
511,209	+	MPMX19_04183	0.83	+0.6
511,209	+	MPMX19_04183	0.83	-1.8
511,209	+	MPMX19_04183	0.83	-0.2
511,209	+	MPMX19_04183	0.83	-0.2
511,209	+	MPMX19_04183	0.83	-1.2
511,209	+	MPMX19_04183	0.83	-0.6
511,209	+	MPMX19_04183	0.83	-0.3
511,209	+	MPMX19_04183	0.83	-1.0
511,209	+	MPMX19_04183	0.83	-0.4
511,209	+	MPMX19_04183	0.83	-0.4
511,209	+	MPMX19_04183	0.83	+0.3
511,209	+	MPMX19_04183	0.83	-0.0
511,209	+	MPMX19_04183	0.83	-0.8
511,209	+	MPMX19_04183	0.83	+0.6
511,209	+	MPMX19_04183	0.83	-0.4
511,209	+	MPMX19_04183	0.83	-2.0
511,209	+	MPMX19_04183	0.83	-0.4
511,209	+	MPMX19_04183	0.83	+2.2
511,210	-	MPMX19_04183	0.83	-0.8
511,210	-	MPMX19_04183	0.83	-0.9
511,210	-	MPMX19_04183	0.83	-0.4
511,210	-	MPMX19_04183	0.83	-1.2
511,210	-	MPMX19_04183	0.83	-0.6
511,210	-	MPMX19_04183	0.83	-0.8
511,210	-	MPMX19_04183	0.83	-0.8
511,210	-	MPMX19_04183	0.83	-0.7
511,210	-	MPMX19_04183	0.83	-0.2
511,210	-	MPMX19_04183	0.83	-0.4
511,210	-	MPMX19_04183	0.83	-1.8
511,210	-	MPMX19_04183	0.83	-1.1
511,210	-	MPMX19_04183	0.83	+0.4
511,210	-	MPMX19_04183	0.83	-0.0
511,210	-	MPMX19_04183	0.83	-1.0
511,210	-	MPMX19_04183	0.83	-0.2
511,210	-	MPMX19_04183	0.83	-1.4
511,210	-	MPMX19_04183	0.83	-1.0
511,210	-	MPMX19_04183	0.83	-1.4
511,210	-	MPMX19_04183	0.83	-0.3
511,210	-	MPMX19_04183	0.83	-1.0
511,210	-	MPMX19_04183	0.83	-2.4
511,210	-	MPMX19_04183	0.83	+0.4
511,553	+			-1.6
511,553	+			-0.0
511,553	+			-0.8
511,589	+			-0.2
511,589	+			-0.8
511,593	+			-1.6
511,594	-			+0.8
511,650	+			-1.0
511,650	+			+0.4
511,650	+			-0.0
511,650	+			-2.4
511,651	-			-2.2
511,651	-			-1.0
511,651	-			-0.7
511,682	+			+1.6
511,682	+			-0.6
511,682	+			+0.8
511,682	+			-1.1
511,682	+			-2.0
511,682	+			-0.5
511,743	+			-1.5
511,853	+			-0.8
511,853	+			-0.4
511,853	+			-0.4
511,855	+			-1.0
511,855	+			+0.2
511,855	+			-2.8
511,855	+			-0.2
511,855	+			-0.8
511,855	+			-1.1
511,855	+			+0.2
511,855	+			-0.6
511,855	+			+1.0
511,855	+			+0.2
511,855	+			-1.1
511,855	+			-1.5
511,855	+			-1.2
512,050	+			-0.2
512,050	+			-0.0
512,051	-			+1.6
512,091	+			+0.2
512,092	-			-1.5
512,092	-			-2.1
512,092	-			+0.2
512,175	+			+2.3
512,175	+			-0.8
512,175	+			-0.1
512,175	+			-1.6
512,287	+			-0.2
512,288	-			+0.2
512,288	-			-1.2
512,288	-			-0.0
512,288	-			+0.6
512,326	+			-0.4
512,327	-			-1.0
512,327	-			+0.6
512,327	-			-3.3
512,327	-			-0.2
512,327	-			-0.5
512,327	-			-2.0
512,405	+			-0.4
512,405	+			-0.8
512,405	+			-0.2
512,405	+			-2.0
512,405	+			-1.0
512,406	-			-0.0
512,406	-			-1.0
512,406	-			-1.8
512,406	-			+0.6
512,406	-			-1.2
512,441	+			-1.2
512,441	+			+1.0
512,441	+			-0.5
512,441	+			-0.2
512,441	+			-0.8
512,441	+			-0.4
512,441	+			+1.0
512,441	+			-1.6
512,442	-			-0.5
512,442	-			-0.0
512,442	-			-1.0
512,442	-			+0.8
512,442	-			+1.6
512,442	-			-0.8
512,442	-			+0.6
512,442	-			-1.4
512,442	-			-1.8
512,442	-			+0.6
512,442	-			-0.8
512,442	-			-1.6

Or see this region's nucleotide sequence