Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04087

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04086 and MPMX19_04087 are separated by 19 nucleotidesMPMX19_04087 and MPMX19_04088 overlap by 4 nucleotides MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463 _04086 MPMX19_04087: MPMX19_04087 - Flagellum site-determining protein YlxH, at 390,483 to 391,280 _04087 MPMX19_04088: MPMX19_04088 - Signal recognition particle 54 kDa protein, at 391,277 to 392,557 _04088 Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1 2 3at 389.545 kb on + strand, within MPMX19_04086at 390.634 kb on + strand, within MPMX19_04087at 390.634 kb on + strand, within MPMX19_04087at 390.673 kb on + strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.769 kb on + strand, within MPMX19_04087at 390.770 kb on - strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.890 kb on - strand, within MPMX19_04087at 390.890 kb on - strand, within MPMX19_04087at 391.251 kb on + strandat 391.252 kb on - strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.316 kb on - strandat 391.316 kb on - strandat 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.907 kb on - strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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389,545 + MPMX19_04086 0.52 -1.0
390,634 + MPMX19_04087 0.19 -0.0
390,634 + MPMX19_04087 0.19 -0.9
390,673 + MPMX19_04087 0.24 +0.6
390,674 - MPMX19_04087 0.24 +1.0
390,674 - MPMX19_04087 0.24 +0.8
390,674 - MPMX19_04087 0.24 -0.2
390,674 - MPMX19_04087 0.24 +0.6
390,674 - MPMX19_04087 0.24 -0.8
390,674 - MPMX19_04087 0.24 -1.6
390,769 + MPMX19_04087 0.36 -1.9
390,770 - MPMX19_04087 0.36 +0.8
390,889 + MPMX19_04087 0.51 -1.2
390,889 + MPMX19_04087 0.51 +2.9
390,889 + MPMX19_04087 0.51 -0.4
390,889 + MPMX19_04087 0.51 -0.3
390,889 + MPMX19_04087 0.51 -0.4
390,889 + MPMX19_04087 0.51 +0.6
390,890 - MPMX19_04087 0.51 +0.4
390,890 - MPMX19_04087 0.51 -0.0
391,251 + -0.9
391,252 - -0.0
391,315 + -0.2
391,315 + -0.6
391,315 + +1.6
391,315 + -0.2
391,315 + +1.0
391,316 - +0.6
391,316 - +0.6
391,443 + MPMX19_04088 0.13 -0.0
391,443 + MPMX19_04088 0.13 -0.0
391,443 + MPMX19_04088 0.13 -0.0
391,443 + MPMX19_04088 0.13 -1.2
391,444 - MPMX19_04088 0.13 -1.3
391,444 - MPMX19_04088 0.13 +1.6
391,444 - MPMX19_04088 0.13 -1.4
391,907 - MPMX19_04088 0.49 -0.8
392,196 + MPMX19_04088 0.72 +2.1
392,196 + MPMX19_04088 0.72 +1.6
392,196 + MPMX19_04088 0.72 -2.1
392,196 + MPMX19_04088 0.72 +1.6
392,197 - MPMX19_04088 0.72 -0.2
392,197 - MPMX19_04088 0.72 +0.3
392,197 - MPMX19_04088 0.72 -0.0
392,197 - MPMX19_04088 0.72 -0.0
392,197 - MPMX19_04088 0.72 +1.6
392,197 - MPMX19_04088 0.72 -0.4
392,197 - MPMX19_04088 0.72 -1.1

Or see this region's nucleotide sequence