Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04020

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04019 and MPMX19_04020 are separated by 1 nucleotidesMPMX19_04020 and MPMX19_04021 are separated by 14 nucleotides MPMX19_04019: MPMX19_04019 - N-acyl-D-glutamate deacylase, at 314,316 to 315,920 _04019 MPMX19_04020: MPMX19_04020 - putative D,D-dipeptide transport system permease protein DdpC, at 315,922 to 316,830 _04020 MPMX19_04021: MPMX19_04021 - Dipeptide transport system permease protein DppB, at 316,845 to 317,786 _04021 Position (kb) 315 316 317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.070 kb on + strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.071 kb on - strand, within MPMX19_04019at 315.148 kb on + strand, within MPMX19_04019at 315.148 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.250 kb on + strand, within MPMX19_04019at 315.251 kb on - strand, within MPMX19_04019at 315.251 kb on - strand, within MPMX19_04019at 315.251 kb on - strand, within MPMX19_04019at 315.251 kb on - strand, within MPMX19_04019at 315.251 kb on - strand, within MPMX19_04019at 315.634 kb on + strand, within MPMX19_04019at 315.634 kb on + strand, within MPMX19_04019at 315.635 kb on - strand, within MPMX19_04019at 315.635 kb on - strand, within MPMX19_04019at 315.635 kb on - strand, within MPMX19_04019at 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.923 kb on + strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 315.924 kb on - strandat 316.049 kb on + strand, within MPMX19_04020at 316.049 kb on + strand, within MPMX19_04020at 316.050 kb on - strand, within MPMX19_04020at 316.050 kb on - strand, within MPMX19_04020at 316.050 kb on - strand, within MPMX19_04020at 316.146 kb on - strand, within MPMX19_04020at 316.146 kb on - strand, within MPMX19_04020at 316.316 kb on + strand, within MPMX19_04020at 316.316 kb on + strand, within MPMX19_04020at 316.316 kb on + strand, within MPMX19_04020at 316.316 kb on + strand, within MPMX19_04020at 316.317 kb on - strand, within MPMX19_04020at 316.317 kb on - strand, within MPMX19_04020at 316.317 kb on - strand, within MPMX19_04020at 316.317 kb on - strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.346 kb on + strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.347 kb on - strand, within MPMX19_04020at 316.452 kb on + strand, within MPMX19_04020at 316.452 kb on + strand, within MPMX19_04020at 316.452 kb on + strand, within MPMX19_04020at 316.453 kb on - strand, within MPMX19_04020at 316.453 kb on - strand, within MPMX19_04020at 316.454 kb on + strand, within MPMX19_04020at 316.454 kb on + strand, within MPMX19_04020at 316.454 kb on + strand, within MPMX19_04020at 316.454 kb on + strand, within MPMX19_04020at 316.454 kb on + strand, within MPMX19_04020at 316.571 kb on + strand, within MPMX19_04020at 316.571 kb on + strand, within MPMX19_04020at 316.571 kb on + strand, within MPMX19_04020at 316.572 kb on - strand, within MPMX19_04020at 316.869 kb on + strandat 316.876 kb on + strandat 316.876 kb on + strandat 316.876 kb on + strandat 316.877 kb on - strandat 316.877 kb on - strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.909 kb on + strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 316.910 kb on - strandat 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.152 kb on + strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.153 kb on - strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.326 kb on + strand, within MPMX19_04021at 317.327 kb on - strand, within MPMX19_04021at 317.327 kb on - strand, within MPMX19_04021at 317.327 kb on - strand, within MPMX19_04021at 317.327 kb on - strand, within MPMX19_04021at 317.584 kb on + strand, within MPMX19_04021at 317.584 kb on + strand, within MPMX19_04021at 317.584 kb on + strand, within MPMX19_04021at 317.584 kb on + strand, within MPMX19_04021at 317.584 kb on + strand, within MPMX19_04021at 317.585 kb on - strand, within MPMX19_04021at 317.585 kb on - strand, within MPMX19_04021at 317.585 kb on - strand, within MPMX19_04021at 317.585 kb on - strand, within MPMX19_04021at 317.776 kb on + strandat 317.776 kb on + strandat 317.776 kb on + strandat 317.776 kb on + strandat 317.776 kb on + strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strandat 317.777 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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315,070 + MPMX19_04019 0.47 -0.9
315,070 + MPMX19_04019 0.47 -1.0
315,070 + MPMX19_04019 0.47 +1.0
315,070 + MPMX19_04019 0.47 +0.1
315,070 + MPMX19_04019 0.47 -1.5
315,070 + MPMX19_04019 0.47 +0.6
315,070 + MPMX19_04019 0.47 -1.0
315,070 + MPMX19_04019 0.47 +3.6
315,070 + MPMX19_04019 0.47 -0.9
315,070 + MPMX19_04019 0.47 +0.6
315,070 + MPMX19_04019 0.47 -1.4
315,070 + MPMX19_04019 0.47 -0.4
315,070 + MPMX19_04019 0.47 +1.6
315,070 + MPMX19_04019 0.47 -1.1
315,070 + MPMX19_04019 0.47 -0.8
315,070 + MPMX19_04019 0.47 -1.3
315,070 + MPMX19_04019 0.47 -0.6
315,070 + MPMX19_04019 0.47 +0.8
315,070 + MPMX19_04019 0.47 -0.5
315,070 + MPMX19_04019 0.47 -0.2
315,070 + MPMX19_04019 0.47 +2.1
315,070 + MPMX19_04019 0.47 -0.1
315,070 + MPMX19_04019 0.47 -1.1
315,070 + MPMX19_04019 0.47 +2.6
315,070 + MPMX19_04019 0.47 +0.8
315,070 + MPMX19_04019 0.47 -1.8
315,070 + MPMX19_04019 0.47 -0.0
315,070 + MPMX19_04019 0.47 -2.1
315,070 + MPMX19_04019 0.47 +0.7
315,070 + MPMX19_04019 0.47 -1.4
315,070 + MPMX19_04019 0.47 -0.8
315,070 + MPMX19_04019 0.47 -0.3
315,070 + MPMX19_04019 0.47 -1.0
315,070 + MPMX19_04019 0.47 -0.0
315,070 + MPMX19_04019 0.47 -1.9
315,071 - MPMX19_04019 0.47 -1.6
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 -0.8
315,071 - MPMX19_04019 0.47 +0.6
315,071 - MPMX19_04019 0.47 +1.1
315,071 - MPMX19_04019 0.47 -1.3
315,071 - MPMX19_04019 0.47 -3.8
315,071 - MPMX19_04019 0.47 -0.2
315,071 - MPMX19_04019 0.47 -1.0
315,071 - MPMX19_04019 0.47 -0.1
315,071 - MPMX19_04019 0.47 -1.0
315,071 - MPMX19_04019 0.47 -2.1
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 -1.4
315,071 - MPMX19_04019 0.47 +0.6
315,071 - MPMX19_04019 0.47 -0.4
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 -1.3
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 +1.6
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 +0.6
315,071 - MPMX19_04019 0.47 -0.0
315,071 - MPMX19_04019 0.47 -1.2
315,071 - MPMX19_04019 0.47 -0.8
315,071 - MPMX19_04019 0.47 -0.0
315,148 + MPMX19_04019 0.52 -1.1
315,148 + MPMX19_04019 0.52 -0.4
315,250 + MPMX19_04019 0.58 +0.2
315,250 + MPMX19_04019 0.58 -1.0
315,250 + MPMX19_04019 0.58 +0.6
315,250 + MPMX19_04019 0.58 +1.1
315,250 + MPMX19_04019 0.58 -0.4
315,250 + MPMX19_04019 0.58 -0.4
315,250 + MPMX19_04019 0.58 -0.3
315,250 + MPMX19_04019 0.58 -1.0
315,250 + MPMX19_04019 0.58 -0.4
315,251 - MPMX19_04019 0.58 -0.8
315,251 - MPMX19_04019 0.58 -0.3
315,251 - MPMX19_04019 0.58 -2.3
315,251 - MPMX19_04019 0.58 -0.3
315,251 - MPMX19_04019 0.58 +1.1
315,634 + MPMX19_04019 0.82 -0.6
315,634 + MPMX19_04019 0.82 +0.8
315,635 - MPMX19_04019 0.82 -1.0
315,635 - MPMX19_04019 0.82 -1.4
315,635 - MPMX19_04019 0.82 +0.6
315,923 + +0.6
315,923 + -0.3
315,923 + -2.1
315,923 + -2.0
315,923 + +0.7
315,923 + +0.2
315,923 + -1.8
315,923 + +0.1
315,923 + -0.4
315,923 + -0.4
315,924 - -1.3
315,924 - -2.1
315,924 - -1.6
315,924 - -1.1
315,924 - -0.4
315,924 - -1.6
315,924 - -0.9
315,924 - -0.2
315,924 - -1.0
315,924 - +0.6
315,924 - +0.4
316,049 + MPMX19_04020 0.14 -1.0
316,049 + MPMX19_04020 0.14 -1.3
316,050 - MPMX19_04020 0.14 -1.6
316,050 - MPMX19_04020 0.14 -0.4
316,050 - MPMX19_04020 0.14 -1.9
316,146 - MPMX19_04020 0.25 -0.8
316,146 - MPMX19_04020 0.25 -0.8
316,316 + MPMX19_04020 0.43 -0.0
316,316 + MPMX19_04020 0.43 -0.4
316,316 + MPMX19_04020 0.43 -0.7
316,316 + MPMX19_04020 0.43 -1.8
316,317 - MPMX19_04020 0.43 -1.3
316,317 - MPMX19_04020 0.43 +0.2
316,317 - MPMX19_04020 0.43 -0.6
316,317 - MPMX19_04020 0.43 +1.1
316,346 + MPMX19_04020 0.47 +1.6
316,346 + MPMX19_04020 0.47 -1.0
316,346 + MPMX19_04020 0.47 +0.6
316,346 + MPMX19_04020 0.47 +0.1
316,346 + MPMX19_04020 0.47 +0.1
316,346 + MPMX19_04020 0.47 -0.4
316,347 - MPMX19_04020 0.47 -0.4
316,347 - MPMX19_04020 0.47 +1.1
316,347 - MPMX19_04020 0.47 -2.8
316,347 - MPMX19_04020 0.47 -1.0
316,347 - MPMX19_04020 0.47 -0.0
316,347 - MPMX19_04020 0.47 -0.8
316,347 - MPMX19_04020 0.47 -0.4
316,347 - MPMX19_04020 0.47 -1.3
316,452 + MPMX19_04020 0.58 -0.4
316,452 + MPMX19_04020 0.58 -2.0
316,452 + MPMX19_04020 0.58 +0.6
316,453 - MPMX19_04020 0.58 +0.3
316,453 - MPMX19_04020 0.58 -0.6
316,454 + MPMX19_04020 0.59 -1.0
316,454 + MPMX19_04020 0.59 +0.1
316,454 + MPMX19_04020 0.59 -1.0
316,454 + MPMX19_04020 0.59 -1.5
316,454 + MPMX19_04020 0.59 -0.4
316,571 + MPMX19_04020 0.71 -0.8
316,571 + MPMX19_04020 0.71 -1.6
316,571 + MPMX19_04020 0.71 +0.1
316,572 - MPMX19_04020 0.72 -1.3
316,869 + -0.8
316,876 + +0.6
316,876 + -1.0
316,876 + -0.4
316,877 - -1.2
316,877 - +1.1
316,909 + -0.8
316,909 + -0.4
316,909 + -0.9
316,909 + -0.8
316,909 + -2.7
316,909 + -0.4
316,909 + -0.4
316,909 + -0.9
316,909 + -0.0
316,909 + -0.8
316,909 + -1.4
316,909 + -1.3
316,909 + -0.7
316,909 + -1.6
316,909 + -1.9
316,909 + -1.0
316,909 + -0.4
316,909 + -1.8
316,909 + -2.4
316,909 + -0.4
316,909 + +0.2
316,909 + -2.0
316,910 - -0.8
316,910 - -0.0
316,910 - +1.0
316,910 - -1.0
316,910 - -3.7
316,910 - +0.6
316,910 - +0.2
316,910 - -0.8
316,910 - -0.0
316,910 - -0.3
316,910 - +1.0
316,910 - -1.6
316,910 - -0.1
316,910 - -2.1
316,910 - -0.9
316,910 - +0.6
316,910 - -1.0
316,910 - -0.0
316,910 - -1.0
316,910 - -2.1
316,910 - -1.0
316,910 - -1.0
316,910 - -0.9
316,910 - -1.0
316,910 - -0.0
316,910 - +0.4
316,910 - -0.4
316,910 - -0.0
317,152 + MPMX19_04021 0.33 -2.0
317,152 + MPMX19_04021 0.33 -1.4
317,152 + MPMX19_04021 0.33 +0.2
317,152 + MPMX19_04021 0.33 -1.4
317,152 + MPMX19_04021 0.33 +0.9
317,152 + MPMX19_04021 0.33 -0.2
317,152 + MPMX19_04021 0.33 -0.8
317,153 - MPMX19_04021 0.33 -2.1
317,153 - MPMX19_04021 0.33 -1.8
317,153 - MPMX19_04021 0.33 -1.3
317,153 - MPMX19_04021 0.33 +0.3
317,153 - MPMX19_04021 0.33 -1.3
317,153 - MPMX19_04021 0.33 -0.8
317,326 + MPMX19_04021 0.51 -0.4
317,326 + MPMX19_04021 0.51 +0.3
317,326 + MPMX19_04021 0.51 -1.3
317,326 + MPMX19_04021 0.51 -2.4
317,326 + MPMX19_04021 0.51 -1.4
317,326 + MPMX19_04021 0.51 -0.0
317,326 + MPMX19_04021 0.51 -1.0
317,326 + MPMX19_04021 0.51 -0.2
317,326 + MPMX19_04021 0.51 -0.2
317,326 + MPMX19_04021 0.51 +0.1
317,326 + MPMX19_04021 0.51 -1.3
317,327 - MPMX19_04021 0.51 -0.8
317,327 - MPMX19_04021 0.51 -0.0
317,327 - MPMX19_04021 0.51 -1.4
317,327 - MPMX19_04021 0.51 +1.6
317,584 + MPMX19_04021 0.78 -0.4
317,584 + MPMX19_04021 0.78 -1.3
317,584 + MPMX19_04021 0.78 -1.6
317,584 + MPMX19_04021 0.78 +1.6
317,584 + MPMX19_04021 0.78 -1.3
317,585 - MPMX19_04021 0.79 -1.4
317,585 - MPMX19_04021 0.79 -1.4
317,585 - MPMX19_04021 0.79 +0.3
317,585 - MPMX19_04021 0.79 +2.1
317,776 + +0.6
317,776 + -1.0
317,776 + +0.5
317,776 + -0.4
317,776 + -2.1
317,777 - -1.0
317,777 - -0.0
317,777 - -0.3
317,777 - -0.4
317,777 - -0.4
317,777 - -1.4
317,777 - -1.0
317,777 - -0.4
317,777 - +0.1
317,777 - +0.2

Or see this region's nucleotide sequence