Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03944

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03943 and MPMX19_03944 are separated by 703 nucleotidesMPMX19_03944 and MPMX19_03945 are separated by 19 nucleotidesMPMX19_03945 and MPMX19_03946 overlap by 20 nucleotides MPMX19_03943: MPMX19_03943 - hypothetical protein, at 227,634 to 228,428 _03943 MPMX19_03944: MPMX19_03944 - hypothetical protein, at 229,132 to 229,866 _03944 MPMX19_03945: MPMX19_03945 - Response regulator MprA, at 229,886 to 230,719 _03945 MPMX19_03946: MPMX19_03946 - Adaptive-response sensory-kinase SasA, at 230,700 to 232,304 _03946 Position (kb) 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 228.156 kb on + strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.157 kb on - strand, within MPMX19_03943at 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.417 kb on + strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.418 kb on - strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.617 kb on + strandat 228.618 kb on - strandat 228.618 kb on - strandat 228.804 kb on + strandat 228.934 kb on + strandat 228.987 kb on + strandat 228.988 kb on - strandat 229.008 kb on - strandat 229.061 kb on + strandat 229.061 kb on + strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.062 kb on - strandat 229.086 kb on + strandat 229.087 kb on - strandat 229.087 kb on - strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.095 kb on + strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.096 kb on - strandat 229.177 kb on + strandat 229.178 kb on - strandat 229.178 kb on - strandat 229.178 kb on - strandat 229.491 kb on + strand, within MPMX19_03944at 229.491 kb on + strand, within MPMX19_03944at 229.492 kb on - strand, within MPMX19_03944at 229.492 kb on - strand, within MPMX19_03944at 229.492 kb on - strand, within MPMX19_03944at 229.681 kb on + strand, within MPMX19_03944at 229.682 kb on - strand, within MPMX19_03944at 229.698 kb on + strand, within MPMX19_03944at 229.698 kb on + strand, within MPMX19_03944at 229.699 kb on - strand, within MPMX19_03944at 229.725 kb on + strand, within MPMX19_03944at 229.725 kb on + strand, within MPMX19_03944at 229.725 kb on + strand, within MPMX19_03944at 229.726 kb on - strand, within MPMX19_03944at 229.726 kb on - strand, within MPMX19_03944at 229.726 kb on - strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.759 kb on + strand, within MPMX19_03944at 229.760 kb on - strand, within MPMX19_03944at 229.760 kb on - strand, within MPMX19_03944at 229.760 kb on - strand, within MPMX19_03944at 229.760 kb on - strand, within MPMX19_03944at 229.864 kb on + strandat 229.864 kb on + strandat 229.865 kb on - strandat 229.985 kb on + strand, within MPMX19_03945at 229.985 kb on + strand, within MPMX19_03945at 229.986 kb on - strand, within MPMX19_03945at 229.986 kb on - strand, within MPMX19_03945at 229.986 kb on - strand, within MPMX19_03945at 229.986 kb on - strand, within MPMX19_03945at 230.171 kb on + strand, within MPMX19_03945at 230.171 kb on + strand, within MPMX19_03945at 230.171 kb on + strand, within MPMX19_03945at 230.171 kb on + strand, within MPMX19_03945at 230.171 kb on + strand, within MPMX19_03945at 230.172 kb on - strand, within MPMX19_03945at 230.172 kb on - strand, within MPMX19_03945at 230.172 kb on - strand, within MPMX19_03945at 230.172 kb on - strand, within MPMX19_03945at 230.172 kb on - strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.248 kb on + strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.249 kb on - strand, within MPMX19_03945at 230.387 kb on - strand, within MPMX19_03945at 230.463 kb on - strand, within MPMX19_03945at 230.474 kb on + strand, within MPMX19_03945at 230.474 kb on + strand, within MPMX19_03945at 230.474 kb on + strand, within MPMX19_03945at 230.474 kb on + strand, within MPMX19_03945at 230.474 kb on + strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.475 kb on - strand, within MPMX19_03945at 230.511 kb on - strand, within MPMX19_03945at 230.609 kb on + strand, within MPMX19_03945at 230.609 kb on + strand, within MPMX19_03945at 230.609 kb on + strand, within MPMX19_03945at 230.609 kb on + strand, within MPMX19_03945at 230.610 kb on - strand, within MPMX19_03945at 230.610 kb on - strand, within MPMX19_03945at 230.610 kb on - strand, within MPMX19_03945at 230.610 kb on - strand, within MPMX19_03945at 230.677 kb on + strandat 230.678 kb on - strandat 230.678 kb on - strandat 230.678 kb on - strandat 230.678 kb on - strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.689 kb on + strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.690 kb on - strandat 230.835 kb on + strandat 230.835 kb on + strandat 230.835 kb on + strandat 230.835 kb on + strandat 230.835 kb on + strandat 230.836 kb on - strandat 230.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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228,156 + MPMX19_03943 0.66 +1.0
228,157 - MPMX19_03943 0.66 -1.6
228,157 - MPMX19_03943 0.66 -0.0
228,157 - MPMX19_03943 0.66 +0.2
228,417 + +2.1
228,417 + -0.0
228,417 + -0.8
228,417 + -1.3
228,417 + -1.0
228,418 - +0.5
228,418 - +0.5
228,418 - -0.8
228,418 - +0.5
228,617 + +1.0
228,617 + -0.0
228,617 + +0.2
228,617 + -0.8
228,617 + -0.6
228,618 - -0.5
228,618 - -0.2
228,804 + -1.3
228,934 + -0.5
228,987 + -0.8
228,988 - -1.9
229,008 - -1.3
229,061 + +0.5
229,061 + +0.7
229,062 - -2.5
229,062 - -1.5
229,062 - -0.0
229,062 - +0.2
229,062 - -1.0
229,062 - +1.8
229,086 + +0.8
229,087 - -1.3
229,087 - +0.3
229,095 + -0.5
229,095 + +0.5
229,095 + +1.1
229,095 + -0.0
229,096 - -1.3
229,096 - +0.1
229,096 - +1.0
229,096 - -0.5
229,096 - -1.3
229,177 + -0.8
229,178 - -0.5
229,178 - -1.2
229,178 - -2.0
229,491 + MPMX19_03944 0.49 +0.1
229,491 + MPMX19_03944 0.49 -3.0
229,492 - MPMX19_03944 0.49 +0.5
229,492 - MPMX19_03944 0.49 -2.5
229,492 - MPMX19_03944 0.49 -2.5
229,681 + MPMX19_03944 0.75 +0.2
229,682 - MPMX19_03944 0.75 -1.9
229,698 + MPMX19_03944 0.77 -0.0
229,698 + MPMX19_03944 0.77 -0.8
229,699 - MPMX19_03944 0.77 -3.0
229,725 + MPMX19_03944 0.81 -1.8
229,725 + MPMX19_03944 0.81 -0.0
229,725 + MPMX19_03944 0.81 -2.2
229,726 - MPMX19_03944 0.81 -1.3
229,726 - MPMX19_03944 0.81 +1.5
229,726 - MPMX19_03944 0.81 -0.5
229,759 + MPMX19_03944 0.85 -1.9
229,759 + MPMX19_03944 0.85 -1.5
229,759 + MPMX19_03944 0.85 +0.3
229,759 + MPMX19_03944 0.85 -1.5
229,759 + MPMX19_03944 0.85 -2.6
229,759 + MPMX19_03944 0.85 -1.2
229,760 - MPMX19_03944 0.85 -1.6
229,760 - MPMX19_03944 0.85 -1.0
229,760 - MPMX19_03944 0.85 -1.5
229,760 - MPMX19_03944 0.85 +0.2
229,864 + +1.5
229,864 + -1.7
229,865 - -0.8
229,985 + MPMX19_03945 0.12 -0.5
229,985 + MPMX19_03945 0.12 -0.0
229,986 - MPMX19_03945 0.12 +0.5
229,986 - MPMX19_03945 0.12 -1.0
229,986 - MPMX19_03945 0.12 -1.0
229,986 - MPMX19_03945 0.12 -1.3
230,171 + MPMX19_03945 0.34 -0.0
230,171 + MPMX19_03945 0.34 -1.0
230,171 + MPMX19_03945 0.34 -2.5
230,171 + MPMX19_03945 0.34 -0.7
230,171 + MPMX19_03945 0.34 -1.3
230,172 - MPMX19_03945 0.34 -0.0
230,172 - MPMX19_03945 0.34 -1.0
230,172 - MPMX19_03945 0.34 -0.9
230,172 - MPMX19_03945 0.34 -0.8
230,172 - MPMX19_03945 0.34 -0.5
230,248 + MPMX19_03945 0.43 -1.6
230,248 + MPMX19_03945 0.43 -0.0
230,248 + MPMX19_03945 0.43 -0.5
230,248 + MPMX19_03945 0.43 -0.3
230,248 + MPMX19_03945 0.43 -1.9
230,248 + MPMX19_03945 0.43 -2.0
230,248 + MPMX19_03945 0.43 -0.7
230,248 + MPMX19_03945 0.43 -1.0
230,248 + MPMX19_03945 0.43 -0.9
230,249 - MPMX19_03945 0.44 -2.3
230,249 - MPMX19_03945 0.44 +0.1
230,249 - MPMX19_03945 0.44 +0.2
230,249 - MPMX19_03945 0.44 -0.5
230,249 - MPMX19_03945 0.44 -1.6
230,249 - MPMX19_03945 0.44 +0.2
230,249 - MPMX19_03945 0.44 -0.5
230,387 - MPMX19_03945 0.60 -2.6
230,463 - MPMX19_03945 0.69 -1.3
230,474 + MPMX19_03945 0.71 -2.4
230,474 + MPMX19_03945 0.71 +0.5
230,474 + MPMX19_03945 0.71 -0.8
230,474 + MPMX19_03945 0.71 +0.8
230,474 + MPMX19_03945 0.71 +0.3
230,475 - MPMX19_03945 0.71 -0.5
230,475 - MPMX19_03945 0.71 -1.3
230,475 - MPMX19_03945 0.71 -1.5
230,475 - MPMX19_03945 0.71 -0.5
230,475 - MPMX19_03945 0.71 -0.8
230,475 - MPMX19_03945 0.71 -0.5
230,475 - MPMX19_03945 0.71 -0.3
230,475 - MPMX19_03945 0.71 -1.9
230,475 - MPMX19_03945 0.71 +0.3
230,475 - MPMX19_03945 0.71 +0.5
230,475 - MPMX19_03945 0.71 -0.5
230,475 - MPMX19_03945 0.71 -0.9
230,511 - MPMX19_03945 0.75 -2.4
230,609 + MPMX19_03945 0.87 -2.4
230,609 + MPMX19_03945 0.87 -1.5
230,609 + MPMX19_03945 0.87 -1.0
230,609 + MPMX19_03945 0.87 -0.0
230,610 - MPMX19_03945 0.87 +0.5
230,610 - MPMX19_03945 0.87 +0.2
230,610 - MPMX19_03945 0.87 -1.6
230,610 - MPMX19_03945 0.87 -1.7
230,677 + -0.8
230,678 - -0.8
230,678 - -0.0
230,678 - -1.0
230,678 - -0.0
230,689 + -1.7
230,689 + -0.8
230,689 + -0.8
230,689 + -1.2
230,689 + -1.3
230,689 + -0.8
230,689 + -1.0
230,689 + -0.8
230,690 - +0.2
230,690 - -0.0
230,690 - -1.4
230,690 - +0.5
230,690 - -1.0
230,690 - -1.5
230,690 - -0.8
230,835 + -2.6
230,835 + -0.0
230,835 + +0.1
230,835 + -1.0
230,835 + -0.8
230,836 - -0.0
230,836 - -0.2

Or see this region's nucleotide sequence