Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03928 and MPMX19_03929 are separated by 28 nucleotides MPMX19_03929 and MPMX19_03930 are separated by 97 nucleotides
MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693
_03928
MPMX19_03929: MPMX19_03929 - hypothetical protein, at 208,722 to 209,450
_03929
MPMX19_03930: MPMX19_03930 - Inner membrane protein YdcO, at 209,548 to 210,771
_03930
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 207.861 kb on - strand, within MPMX19_03928 at 207.861 kb on - strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.983 kb on + strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.984 kb on - strand, within MPMX19_03928 at 207.985 kb on + strand, within MPMX19_03928 at 207.986 kb on - strand, within MPMX19_03928 at 208.385 kb on + strand, within MPMX19_03928 at 208.386 kb on - strand, within MPMX19_03928 at 208.386 kb on - strand, within MPMX19_03928 at 208.529 kb on + strand at 208.530 kb on - strand at 208.691 kb on + strand at 208.691 kb on + strand at 208.691 kb on + strand at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.865 kb on - strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 209.379 kb on + strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.662 kb on + strand at 209.663 kb on - strand at 209.663 kb on - strand at 209.727 kb on + strand, within MPMX19_03930 at 209.727 kb on + strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 207,861 - MPMX19_03928 0.66 -1.3 207,861 - MPMX19_03928 0.66 +1.1 207,983 + MPMX19_03928 0.71 +0.9 207,983 + MPMX19_03928 0.71 +0.9 207,983 + MPMX19_03928 0.71 -0.6 207,983 + MPMX19_03928 0.71 +0.2 207,983 + MPMX19_03928 0.71 +0.9 207,983 + MPMX19_03928 0.71 +0.5 207,984 - MPMX19_03928 0.71 -0.5 207,984 - MPMX19_03928 0.71 -1.1 207,984 - MPMX19_03928 0.71 -0.8 207,984 - MPMX19_03928 0.71 -1.3 207,985 + MPMX19_03928 0.71 +0.5 207,986 - MPMX19_03928 0.71 -1.1 208,385 + MPMX19_03928 0.87 +1.5 208,386 - MPMX19_03928 0.87 -1.5 208,386 - MPMX19_03928 0.87 -1.1 208,529 + -0.8 208,530 - -0.1 208,691 + -0.8 208,691 + +3.1 208,691 + -0.6 208,864 + MPMX19_03929 0.19 -2.1 208,864 + MPMX19_03929 0.19 +0.2 208,864 + MPMX19_03929 0.19 -0.5 208,865 - MPMX19_03929 0.20 -1.3 208,894 + MPMX19_03929 0.24 -0.8 208,894 + MPMX19_03929 0.24 +1.5 208,894 + MPMX19_03929 0.24 -2.2 208,895 - MPMX19_03929 0.24 -0.1 208,895 - MPMX19_03929 0.24 -0.1 208,895 - MPMX19_03929 0.24 -0.5 208,895 - MPMX19_03929 0.24 -3.2 208,960 + MPMX19_03929 0.33 +0.8 208,960 + MPMX19_03929 0.33 -0.6 208,960 + MPMX19_03929 0.33 -1.6 208,961 - MPMX19_03929 0.33 -1.3 208,961 - MPMX19_03929 0.33 +0.3 208,961 - MPMX19_03929 0.33 -0.8 208,961 - MPMX19_03929 0.33 -0.8 209,379 + +0.2 209,380 - -0.3 209,380 - -1.1 209,662 + +0.5 209,663 - -0.1 209,663 - -1.5 209,727 + MPMX19_03930 0.15 -0.8 209,727 + MPMX19_03930 0.15 -2.3 209,728 - MPMX19_03930 0.15 -1.5 209,728 - MPMX19_03930 0.15 -1.4 209,728 - MPMX19_03930 0.15 +0.8 209,728 - MPMX19_03930 0.15 -0.6 209,728 - MPMX19_03930 0.15 +1.1 210,103 + MPMX19_03930 0.45 +0.3 210,103 + MPMX19_03930 0.45 -0.9 210,103 + MPMX19_03930 0.45 +0.5 210,103 + MPMX19_03930 0.45 +2.5 210,103 + MPMX19_03930 0.45 -0.5 210,104 - MPMX19_03930 0.45 +1.2 210,104 - MPMX19_03930 0.45 -1.1 210,104 - MPMX19_03930 0.45 -1.8 210,104 - MPMX19_03930 0.45 +0.4
Or see this region's nucleotide sequence