Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03749

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03748 and MPMX19_03749 overlap by 4 nucleotidesMPMX19_03749 and MPMX19_03750 are separated by 507 nucleotides MPMX19_03748: MPMX19_03748 - Sensor protein KdpD, at 1,190,552 to 1,193,317 _03748 MPMX19_03749: MPMX19_03749 - KDP operon transcriptional regulatory protein KdpE, at 1,193,314 to 1,194,012 _03749 MPMX19_03750: MPMX19_03750 - hypothetical protein, at 1,194,520 to 1,196,280 _03750 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1192.484 kb on + strand, within MPMX19_03748at 1192.485 kb on - strand, within MPMX19_03748at 1192.953 kb on + strand, within MPMX19_03748at 1192.953 kb on + strand, within MPMX19_03748at 1192.954 kb on - strand, within MPMX19_03748at 1192.954 kb on - strand, within MPMX19_03748at 1192.954 kb on - strand, within MPMX19_03748at 1193.000 kb on + strand, within MPMX19_03748at 1193.000 kb on + strand, within MPMX19_03748at 1193.000 kb on + strand, within MPMX19_03748at 1193.126 kb on + strandat 1193.126 kb on + strandat 1193.126 kb on + strandat 1193.126 kb on + strandat 1193.127 kb on - strandat 1193.127 kb on - strandat 1193.127 kb on - strandat 1193.127 kb on - strandat 1193.407 kb on + strand, within MPMX19_03749at 1193.408 kb on - strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.626 kb on + strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.627 kb on - strand, within MPMX19_03749at 1193.803 kb on + strand, within MPMX19_03749at 1193.804 kb on - strand, within MPMX19_03749at 1193.899 kb on + strand, within MPMX19_03749at 1193.899 kb on + strand, within MPMX19_03749at 1193.899 kb on + strand, within MPMX19_03749at 1193.899 kb on + strand, within MPMX19_03749at 1193.900 kb on - strand, within MPMX19_03749at 1193.900 kb on - strand, within MPMX19_03749at 1193.900 kb on - strand, within MPMX19_03749at 1193.900 kb on - strand, within MPMX19_03749at 1193.911 kb on + strand, within MPMX19_03749at 1193.911 kb on + strand, within MPMX19_03749at 1193.911 kb on + strand, within MPMX19_03749at 1193.911 kb on + strand, within MPMX19_03749at 1193.911 kb on + strand, within MPMX19_03749at 1193.912 kb on - strand, within MPMX19_03749at 1194.019 kb on + strandat 1194.019 kb on + strandat 1194.019 kb on + strandat 1194.019 kb on + strandat 1194.020 kb on - strandat 1194.020 kb on - strandat 1194.020 kb on - strandat 1194.020 kb on - strandat 1194.122 kb on + strandat 1194.122 kb on + strandat 1194.122 kb on + strandat 1194.122 kb on + strandat 1194.122 kb on + strandat 1194.122 kb on + strandat 1194.123 kb on - strandat 1194.123 kb on - strandat 1194.123 kb on - strandat 1194.123 kb on - strandat 1194.225 kb on + strandat 1194.225 kb on + strandat 1194.225 kb on + strandat 1194.225 kb on + strandat 1194.225 kb on + strandat 1194.269 kb on + strandat 1194.269 kb on + strandat 1194.269 kb on + strandat 1194.269 kb on + strandat 1194.269 kb on + strandat 1194.269 kb on + strandat 1194.270 kb on - strandat 1194.270 kb on - strandat 1194.270 kb on - strandat 1194.270 kb on - strandat 1194.270 kb on - strandat 1194.709 kb on + strand, within MPMX19_03750at 1194.709 kb on + strand, within MPMX19_03750at 1194.709 kb on + strand, within MPMX19_03750at 1194.710 kb on - strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.775 kb on + strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.776 kb on - strand, within MPMX19_03750at 1194.862 kb on + strand, within MPMX19_03750at 1194.862 kb on + strand, within MPMX19_03750at 1194.862 kb on + strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.863 kb on - strand, within MPMX19_03750at 1194.982 kb on + strand, within MPMX19_03750at 1194.982 kb on + strand, within MPMX19_03750at 1194.982 kb on + strand, within MPMX19_03750at 1194.982 kb on + strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750at 1194.983 kb on - strand, within MPMX19_03750

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,192,484 + MPMX19_03748 0.70 -0.2
1,192,485 - MPMX19_03748 0.70 -0.3
1,192,953 + MPMX19_03748 0.87 -0.1
1,192,953 + MPMX19_03748 0.87 -0.6
1,192,954 - MPMX19_03748 0.87 +0.5
1,192,954 - MPMX19_03748 0.87 +0.1
1,192,954 - MPMX19_03748 0.87 -0.9
1,193,000 + MPMX19_03748 0.89 -0.3
1,193,000 + MPMX19_03748 0.89 +0.2
1,193,000 + MPMX19_03748 0.89 +0.5
1,193,126 + -0.1
1,193,126 + -1.5
1,193,126 + -0.9
1,193,126 + +0.7
1,193,127 - +0.7
1,193,127 - +0.7
1,193,127 - -1.1
1,193,127 - -0.6
1,193,407 + MPMX19_03749 0.13 +0.4
1,193,408 - MPMX19_03749 0.13 -1.1
1,193,626 + MPMX19_03749 0.45 -1.6
1,193,626 + MPMX19_03749 0.45 -0.6
1,193,626 + MPMX19_03749 0.45 -2.0
1,193,626 + MPMX19_03749 0.45 +0.1
1,193,626 + MPMX19_03749 0.45 -1.1
1,193,626 + MPMX19_03749 0.45 -0.9
1,193,626 + MPMX19_03749 0.45 -0.9
1,193,626 + MPMX19_03749 0.45 -0.5
1,193,627 - MPMX19_03749 0.45 +1.1
1,193,627 - MPMX19_03749 0.45 -0.6
1,193,627 - MPMX19_03749 0.45 -1.3
1,193,627 - MPMX19_03749 0.45 -1.6
1,193,627 - MPMX19_03749 0.45 +1.3
1,193,627 - MPMX19_03749 0.45 -1.3
1,193,627 - MPMX19_03749 0.45 -1.0
1,193,627 - MPMX19_03749 0.45 -1.8
1,193,627 - MPMX19_03749 0.45 -0.4
1,193,627 - MPMX19_03749 0.45 -0.6
1,193,803 + MPMX19_03749 0.70 -1.5
1,193,804 - MPMX19_03749 0.70 -0.3
1,193,899 + MPMX19_03749 0.84 -2.1
1,193,899 + MPMX19_03749 0.84 +0.7
1,193,899 + MPMX19_03749 0.84 -0.3
1,193,899 + MPMX19_03749 0.84 -0.5
1,193,900 - MPMX19_03749 0.84 -2.0
1,193,900 - MPMX19_03749 0.84 -0.6
1,193,900 - MPMX19_03749 0.84 +2.3
1,193,900 - MPMX19_03749 0.84 -0.3
1,193,911 + MPMX19_03749 0.85 +0.1
1,193,911 + MPMX19_03749 0.85 -1.6
1,193,911 + MPMX19_03749 0.85 +0.2
1,193,911 + MPMX19_03749 0.85 -2.1
1,193,911 + MPMX19_03749 0.85 +0.4
1,193,912 - MPMX19_03749 0.86 -0.5
1,194,019 + -2.3
1,194,019 + -0.3
1,194,019 + -1.5
1,194,019 + -1.6
1,194,020 - -1.0
1,194,020 - +0.7
1,194,020 - -0.9
1,194,020 - +0.3
1,194,122 + -0.2
1,194,122 + -1.9
1,194,122 + -0.2
1,194,122 + -2.6
1,194,122 + -0.9
1,194,122 + -0.9
1,194,123 - +0.7
1,194,123 - +0.4
1,194,123 - -0.9
1,194,123 - -1.9
1,194,225 + +0.1
1,194,225 + -1.3
1,194,225 + +0.7
1,194,225 + -2.2
1,194,225 + -0.3
1,194,269 + +0.4
1,194,269 + +0.9
1,194,269 + -0.4
1,194,269 + +0.8
1,194,269 + -0.9
1,194,269 + -0.5
1,194,270 - -2.3
1,194,270 - -1.8
1,194,270 - -0.3
1,194,270 - +0.8
1,194,270 - -1.0
1,194,709 + MPMX19_03750 0.11 -1.3
1,194,709 + MPMX19_03750 0.11 -1.5
1,194,709 + MPMX19_03750 0.11 -1.1
1,194,710 - MPMX19_03750 0.11 -0.6
1,194,775 + MPMX19_03750 0.14 -1.6
1,194,775 + MPMX19_03750 0.14 -0.6
1,194,775 + MPMX19_03750 0.14 -2.1
1,194,775 + MPMX19_03750 0.14 -0.5
1,194,775 + MPMX19_03750 0.14 -0.5
1,194,775 + MPMX19_03750 0.14 -1.3
1,194,775 + MPMX19_03750 0.14 +0.3
1,194,775 + MPMX19_03750 0.14 -0.3
1,194,775 + MPMX19_03750 0.14 -0.3
1,194,775 + MPMX19_03750 0.14 -1.6
1,194,775 + MPMX19_03750 0.14 +0.5
1,194,775 + MPMX19_03750 0.14 -2.2
1,194,775 + MPMX19_03750 0.14 +0.9
1,194,775 + MPMX19_03750 0.14 -1.1
1,194,775 + MPMX19_03750 0.14 +0.5
1,194,775 + MPMX19_03750 0.14 +0.3
1,194,775 + MPMX19_03750 0.14 +0.1
1,194,776 - MPMX19_03750 0.15 -1.2
1,194,776 - MPMX19_03750 0.15 -0.8
1,194,776 - MPMX19_03750 0.15 -2.2
1,194,776 - MPMX19_03750 0.15 -0.9
1,194,776 - MPMX19_03750 0.15 -1.1
1,194,776 - MPMX19_03750 0.15 +1.0
1,194,776 - MPMX19_03750 0.15 -0.6
1,194,776 - MPMX19_03750 0.15 -1.1
1,194,776 - MPMX19_03750 0.15 -0.3
1,194,776 - MPMX19_03750 0.15 -0.6
1,194,862 + MPMX19_03750 0.19 +0.5
1,194,862 + MPMX19_03750 0.19 -1.2
1,194,862 + MPMX19_03750 0.19 -3.4
1,194,863 - MPMX19_03750 0.19 -1.6
1,194,863 - MPMX19_03750 0.19 -0.9
1,194,863 - MPMX19_03750 0.19 +0.5
1,194,863 - MPMX19_03750 0.19 -1.3
1,194,863 - MPMX19_03750 0.19 -0.3
1,194,863 - MPMX19_03750 0.19 -1.6
1,194,863 - MPMX19_03750 0.19 -0.1
1,194,982 + MPMX19_03750 0.26 -0.9
1,194,982 + MPMX19_03750 0.26 +0.7
1,194,982 + MPMX19_03750 0.26 -2.6
1,194,982 + MPMX19_03750 0.26 -0.4
1,194,983 - MPMX19_03750 0.26 -1.1
1,194,983 - MPMX19_03750 0.26 -0.1
1,194,983 - MPMX19_03750 0.26 -0.6
1,194,983 - MPMX19_03750 0.26 +0.1
1,194,983 - MPMX19_03750 0.26 +0.1
1,194,983 - MPMX19_03750 0.26 +1.7
1,194,983 - MPMX19_03750 0.26 +0.7

Or see this region's nucleotide sequence