Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03241 and MPMX19_03242 are separated by 82 nucleotides MPMX19_03242 and MPMX19_03243 are separated by 368 nucleotides
MPMX19_03241: MPMX19_03241 - Linear gramicidin synthase subunit D, at 554,693 to 562,729
_03241
MPMX19_03242: MPMX19_03242 - ABC transporter ATP-binding/permease protein YojI, at 562,812 to 564,467
_03242
MPMX19_03243: MPMX19_03243 - hypothetical protein, at 564,836 to 565,849
_03243
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.972 kb on - strand at 561.972 kb on - strand at 562.043 kb on + strand at 562.091 kb on + strand at 562.092 kb on - strand at 562.238 kb on + strand at 562.238 kb on + strand at 562.239 kb on - strand at 562.239 kb on - strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.787 kb on - strand at 562.787 kb on - strand at 562.802 kb on - strand at 562.886 kb on - strand at 562.886 kb on - strand at 562.954 kb on + strand at 562.954 kb on + strand at 562.954 kb on + strand at 562.955 kb on - strand at 562.955 kb on - strand at 562.955 kb on - strand at 562.955 kb on - strand at 563.111 kb on + strand, within MPMX19_03242 at 563.111 kb on + strand, within MPMX19_03242 at 563.111 kb on + strand, within MPMX19_03242 at 563.137 kb on + strand, within MPMX19_03242 at 563.137 kb on + strand, within MPMX19_03242 at 563.138 kb on - strand, within MPMX19_03242 at 563.138 kb on - strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.198 kb on - strand, within MPMX19_03242 at 563.198 kb on - strand, within MPMX19_03242 at 563.296 kb on + strand, within MPMX19_03242 at 563.296 kb on + strand, within MPMX19_03242 at 563.297 kb on - strand, within MPMX19_03242 at 563.297 kb on - strand, within MPMX19_03242 at 563.435 kb on - strand, within MPMX19_03242 at 563.440 kb on + strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.623 kb on + strand, within MPMX19_03242 at 563.623 kb on + strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.023 kb on - strand, within MPMX19_03242 at 564.311 kb on + strand at 564.311 kb on + strand at 564.312 kb on - strand at 564.312 kb on - strand at 564.549 kb on + strand at 564.550 kb on - strand at 564.550 kb on - strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.748 kb on + strand at 564.749 kb on - strand at 564.749 kb on - strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 565.303 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 561,887 + MPMX19_03241 0.90 -1.1 561,887 + MPMX19_03241 0.90 +0.4 561,887 + MPMX19_03241 0.90 +1.1 561,887 + MPMX19_03241 0.90 +0.1 561,887 + MPMX19_03241 0.90 -0.3 561,887 + MPMX19_03241 0.90 +0.5 561,887 + MPMX19_03241 0.90 +0.7 561,887 + MPMX19_03241 0.90 -0.8 561,887 + MPMX19_03241 0.90 +0.0 561,887 + MPMX19_03241 0.90 +0.1 561,887 + MPMX19_03241 0.90 -0.0 561,887 + MPMX19_03241 0.90 -0.5 561,887 + MPMX19_03241 0.90 -0.9 561,887 + MPMX19_03241 0.90 -0.6 561,887 + MPMX19_03241 0.90 -1.7 561,887 + MPMX19_03241 0.90 +1.7 561,888 - MPMX19_03241 0.90 +0.4 561,888 - MPMX19_03241 0.90 +0.1 561,888 - MPMX19_03241 0.90 +0.3 561,888 - MPMX19_03241 0.90 -1.2 561,888 - MPMX19_03241 0.90 +0.3 561,888 - MPMX19_03241 0.90 +0.7 561,888 - MPMX19_03241 0.90 -0.8 561,891 + MPMX19_03241 0.90 -1.5 561,891 + MPMX19_03241 0.90 -0.9 561,891 + MPMX19_03241 0.90 -1.0 561,891 + MPMX19_03241 0.90 -1.2 561,891 + MPMX19_03241 0.90 +0.3 561,891 + MPMX19_03241 0.90 -0.3 561,891 + MPMX19_03241 0.90 -0.3 561,891 + MPMX19_03241 0.90 -0.3 561,891 + MPMX19_03241 0.90 -0.1 561,891 + MPMX19_03241 0.90 +1.0 561,892 - MPMX19_03241 0.90 -0.6 561,892 - MPMX19_03241 0.90 +1.0 561,892 - MPMX19_03241 0.90 -2.3 561,892 - MPMX19_03241 0.90 +0.1 561,892 - MPMX19_03241 0.90 +0.4 561,972 - -0.3 561,972 - -0.9 562,043 + -1.5 562,091 + +0.7 562,092 - -1.3 562,238 + -0.7 562,238 + -1.1 562,239 - -2.2 562,239 - -0.6 562,327 + +0.1 562,327 + +1.7 562,327 + -0.1 562,327 + -0.1 562,327 + -0.6 562,328 - -2.4 562,328 - -0.8 562,328 - -1.5 562,328 - -0.5 562,328 - -1.9 562,787 - -0.9 562,787 - -2.8 562,802 - -0.3 562,886 - -1.1 562,886 - -1.9 562,954 + -1.1 562,954 + +0.1 562,954 + -0.7 562,955 - -1.3 562,955 - -1.1 562,955 - -0.3 562,955 - -0.8 563,111 + MPMX19_03242 0.18 -0.3 563,111 + MPMX19_03242 0.18 -1.1 563,111 + MPMX19_03242 0.18 +0.1 563,137 + MPMX19_03242 0.20 -1.0 563,137 + MPMX19_03242 0.20 +1.2 563,138 - MPMX19_03242 0.20 +1.1 563,138 - MPMX19_03242 0.20 -1.3 563,197 + MPMX19_03242 0.23 -1.6 563,197 + MPMX19_03242 0.23 -1.3 563,197 + MPMX19_03242 0.23 -0.6 563,197 + MPMX19_03242 0.23 +0.7 563,198 - MPMX19_03242 0.23 +0.1 563,198 - MPMX19_03242 0.23 -0.3 563,296 + MPMX19_03242 0.29 +1.0 563,296 + MPMX19_03242 0.29 -1.6 563,297 - MPMX19_03242 0.29 +0.1 563,297 - MPMX19_03242 0.29 +1.1 563,435 - MPMX19_03242 0.38 -2.0 563,440 + MPMX19_03242 0.38 +0.7 563,441 - MPMX19_03242 0.38 -3.4 563,441 - MPMX19_03242 0.38 -0.6 563,441 - MPMX19_03242 0.38 -0.9 563,623 + MPMX19_03242 0.49 +0.1 563,623 + MPMX19_03242 0.49 +1.4 563,624 - MPMX19_03242 0.49 +0.9 563,624 - MPMX19_03242 0.49 +0.1 563,624 - MPMX19_03242 0.49 +0.6 563,950 + MPMX19_03242 0.69 -1.5 563,950 + MPMX19_03242 0.69 -1.3 563,950 + MPMX19_03242 0.69 -1.8 563,950 + MPMX19_03242 0.69 -1.6 563,950 + MPMX19_03242 0.69 -0.9 563,950 + MPMX19_03242 0.69 +0.1 563,950 + MPMX19_03242 0.69 -0.6 563,950 + MPMX19_03242 0.69 -1.4 563,951 - MPMX19_03242 0.69 -0.6 563,951 - MPMX19_03242 0.69 -1.3 563,951 - MPMX19_03242 0.69 -1.0 563,951 - MPMX19_03242 0.69 -0.6 563,951 - MPMX19_03242 0.69 -0.3 563,951 - MPMX19_03242 0.69 -0.8 563,951 - MPMX19_03242 0.69 -0.1 564,022 + MPMX19_03242 0.73 -1.9 564,022 + MPMX19_03242 0.73 -1.5 564,022 + MPMX19_03242 0.73 +0.7 564,023 - MPMX19_03242 0.73 -1.4 564,311 + +0.1 564,311 + +0.4 564,312 - -0.3 564,312 - -2.3 564,549 + -0.9 564,550 - -1.5 564,550 - -1.1 564,740 - +0.2 564,740 - +1.2 564,748 + -0.6 564,749 - -0.0 564,749 - -1.1 564,797 + +1.7 564,797 + -1.1 564,797 + +0.1 564,797 + -0.1 564,797 + +1.1 564,797 + +0.1 564,797 + -1.6 564,797 + -1.1 564,797 + -0.1 564,797 + +0.7 564,798 - +0.3 564,798 - -0.1 564,798 - -3.2 564,798 - +0.2 564,798 - -0.6 564,799 + +0.7 564,799 + -0.5 564,799 + -1.6 564,799 + -1.1 564,799 + -3.0 564,799 + +0.3 564,799 + +0.3 564,799 + -1.5 564,799 + -0.3 564,799 + -1.0 564,799 + +0.4 564,799 + +1.0 564,800 - +1.7 564,800 - -0.1 564,800 - -1.1 564,800 - -0.9 564,800 - -1.9 564,800 - +0.7 564,800 - -1.5 564,836 - -0.3 564,836 - +0.1 564,836 - +1.2 565,303 + MPMX19_03243 0.46 -0.6 565,304 + MPMX19_03243 0.46 -0.6 565,304 + MPMX19_03243 0.46 -0.6 565,304 + MPMX19_03243 0.46 +0.1 565,304 + MPMX19_03243 0.46 -0.7 565,304 + MPMX19_03243 0.46 -3.1 565,304 + MPMX19_03243 0.46 -0.8 565,304 + MPMX19_03243 0.46 -0.4 565,304 + MPMX19_03243 0.46 -2.6 565,304 + MPMX19_03243 0.46 -0.5 565,304 + MPMX19_03243 0.46 -1.9 565,305 - MPMX19_03243 0.46 +0.8 565,305 - MPMX19_03243 0.46 +0.1 565,305 - MPMX19_03243 0.46 -0.5 565,305 - MPMX19_03243 0.46 -0.3 565,305 - MPMX19_03243 0.46 +0.1 565,305 - MPMX19_03243 0.46 +0.2 565,305 - MPMX19_03243 0.46 -1.1 565,305 - MPMX19_03243 0.46 -0.3 565,355 + MPMX19_03243 0.51 -1.9 565,355 + MPMX19_03243 0.51 -0.9 565,355 + MPMX19_03243 0.51 +0.5 565,356 - MPMX19_03243 0.51 -0.8 565,356 - MPMX19_03243 0.51 -0.6
Or see this region's nucleotide sequence