Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03144

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03142 and MPMX19_03143 are separated by 425 nucleotidesMPMX19_03143 and MPMX19_03144 are separated by 104 nucleotidesMPMX19_03144 and MPMX19_03145 are separated by 44 nucleotidesMPMX19_03145 and MPMX19_03146 overlap by 4 nucleotides MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766 _03142 MPMX19_03143: MPMX19_03143 - Polar-differentiation response regulator DivK, at 433,192 to 433,578 _03143 MPMX19_03144: MPMX19_03144 - UDP-N-acetylglucosamine 4-epimerase, at 433,683 to 434,624 _03144 MPMX19_03145: MPMX19_03145 - hypothetical protein, at 434,669 to 435,553 _03145 MPMX19_03146: MPMX19_03146 - hypothetical protein, at 435,550 to 437,832 _03146 Position (kb) 433 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.734 kb on + strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.735 kb on - strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.809 kb on + strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.810 kb on - strandat 432.919 kb on - strandat 432.919 kb on - strandat 433.024 kb on - strandat 433.031 kb on + strandat 433.067 kb on + strandat 433.401 kb on + strand, within MPMX19_03143at 433.617 kb on + strandat 433.617 kb on + strandat 433.642 kb on + strandat 433.642 kb on + strandat 433.643 kb on - strandat 433.643 kb on - strandat 433.692 kb on + strandat 433.692 kb on + strandat 433.692 kb on + strandat 433.693 kb on - strandat 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.043 kb on + strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.044 kb on - strand, within MPMX19_03144at 434.124 kb on + strand, within MPMX19_03144at 434.124 kb on + strand, within MPMX19_03144at 434.124 kb on + strand, within MPMX19_03144at 434.124 kb on + strand, within MPMX19_03144at 434.125 kb on - strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.217 kb on + strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.218 kb on - strand, within MPMX19_03144at 434.247 kb on + strand, within MPMX19_03144at 434.247 kb on + strand, within MPMX19_03144at 434.248 kb on - strand, within MPMX19_03144at 434.248 kb on - strand, within MPMX19_03144at 434.248 kb on - strand, within MPMX19_03144at 434.344 kb on + strand, within MPMX19_03144at 434.344 kb on + strand, within MPMX19_03144at 434.361 kb on + strand, within MPMX19_03144at 434.362 kb on - strand, within MPMX19_03144at 434.362 kb on - strand, within MPMX19_03144at 434.362 kb on - strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.406 kb on + strand, within MPMX19_03144at 434.407 kb on - strand, within MPMX19_03144at 434.407 kb on - strand, within MPMX19_03144at 434.407 kb on - strand, within MPMX19_03144at 434.407 kb on - strand, within MPMX19_03144at 434.801 kb on + strand, within MPMX19_03145at 434.801 kb on + strand, within MPMX19_03145at 434.801 kb on + strand, within MPMX19_03145at 434.801 kb on + strand, within MPMX19_03145at 434.801 kb on + strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.802 kb on - strand, within MPMX19_03145at 434.804 kb on + strand, within MPMX19_03145at 434.804 kb on + strand, within MPMX19_03145at 434.804 kb on + strand, within MPMX19_03145at 434.804 kb on + strand, within MPMX19_03145at 434.805 kb on - strand, within MPMX19_03145at 434.805 kb on - strand, within MPMX19_03145at 434.805 kb on - strand, within MPMX19_03145at 434.918 kb on + strand, within MPMX19_03145at 434.918 kb on + strand, within MPMX19_03145at 434.918 kb on + strand, within MPMX19_03145at 434.919 kb on - strand, within MPMX19_03145at 434.919 kb on - strand, within MPMX19_03145at 434.919 kb on - strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.020 kb on + strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.021 kb on - strand, within MPMX19_03145at 435.249 kb on - strand, within MPMX19_03145at 435.249 kb on - strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.305 kb on + strand, within MPMX19_03145at 435.306 kb on - strand, within MPMX19_03145at 435.306 kb on - strand, within MPMX19_03145at 435.306 kb on - strand, within MPMX19_03145at 435.431 kb on + strand, within MPMX19_03145at 435.431 kb on + strand, within MPMX19_03145at 435.432 kb on - strand, within MPMX19_03145at 435.432 kb on - strand, within MPMX19_03145at 435.432 kb on - strand, within MPMX19_03145at 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.470 kb on + strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.471 kb on - strandat 435.503 kb on + strandat 435.503 kb on + strandat 435.503 kb on + strandat 435.503 kb on + strandat 435.504 kb on - strandat 435.504 kb on - strandat 435.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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432,734 + -1.4
432,734 + -0.5
432,734 + +1.1
432,734 + -0.0
432,734 + -0.8
432,734 + -0.3
432,734 + +0.7
432,734 + +0.3
432,734 + -1.1
432,734 + -0.7
432,734 + +0.4
432,735 - -0.1
432,735 - -1.3
432,735 - -1.7
432,735 - -1.5
432,735 - -2.4
432,735 - -0.7
432,735 - -0.9
432,735 - +1.3
432,735 - -0.3
432,735 - -0.9
432,809 + -0.4
432,809 + +0.7
432,809 + +0.7
432,809 + -1.7
432,809 + +1.1
432,809 + -1.4
432,809 + +1.1
432,809 + -0.7
432,809 + -1.8
432,809 + +0.3
432,810 - -1.6
432,810 - -1.5
432,810 - +0.1
432,810 - -1.9
432,919 - +0.1
432,919 - -0.7
433,024 - +0.5
433,031 + -0.3
433,067 + -0.4
433,401 + MPMX19_03143 0.54 +0.9
433,617 + -0.1
433,617 + -0.9
433,642 + +0.1
433,642 + +0.1
433,643 - -1.1
433,643 - +0.1
433,692 + -0.6
433,692 + +0.7
433,692 + -0.3
433,693 - -0.9
434,043 + MPMX19_03144 0.38 -2.3
434,043 + MPMX19_03144 0.38 +0.2
434,043 + MPMX19_03144 0.38 +0.1
434,043 + MPMX19_03144 0.38 +0.4
434,043 + MPMX19_03144 0.38 -0.9
434,043 + MPMX19_03144 0.38 -0.6
434,043 + MPMX19_03144 0.38 -2.2
434,043 + MPMX19_03144 0.38 -0.6
434,043 + MPMX19_03144 0.38 +0.1
434,043 + MPMX19_03144 0.38 +0.4
434,043 + MPMX19_03144 0.38 -0.3
434,043 + MPMX19_03144 0.38 -2.2
434,043 + MPMX19_03144 0.38 -1.3
434,043 + MPMX19_03144 0.38 +0.1
434,043 + MPMX19_03144 0.38 -1.6
434,043 + MPMX19_03144 0.38 -1.3
434,043 + MPMX19_03144 0.38 -0.5
434,043 + MPMX19_03144 0.38 +1.1
434,043 + MPMX19_03144 0.38 +0.4
434,043 + MPMX19_03144 0.38 -0.8
434,044 - MPMX19_03144 0.38 -1.1
434,044 - MPMX19_03144 0.38 +0.7
434,044 - MPMX19_03144 0.38 +0.1
434,044 - MPMX19_03144 0.38 +1.1
434,044 - MPMX19_03144 0.38 -0.9
434,044 - MPMX19_03144 0.38 -0.3
434,044 - MPMX19_03144 0.38 -1.8
434,044 - MPMX19_03144 0.38 -0.3
434,044 - MPMX19_03144 0.38 +1.1
434,044 - MPMX19_03144 0.38 +1.7
434,044 - MPMX19_03144 0.38 +0.4
434,044 - MPMX19_03144 0.38 -1.1
434,044 - MPMX19_03144 0.38 -0.3
434,044 - MPMX19_03144 0.38 +1.7
434,044 - MPMX19_03144 0.38 -0.9
434,044 - MPMX19_03144 0.38 +0.7
434,124 + MPMX19_03144 0.47 -0.3
434,124 + MPMX19_03144 0.47 +1.1
434,124 + MPMX19_03144 0.47 -0.5
434,124 + MPMX19_03144 0.47 +0.1
434,125 - MPMX19_03144 0.47 -0.3
434,217 + MPMX19_03144 0.57 +0.4
434,217 + MPMX19_03144 0.57 -1.8
434,217 + MPMX19_03144 0.57 -1.1
434,217 + MPMX19_03144 0.57 +1.4
434,217 + MPMX19_03144 0.57 -0.1
434,217 + MPMX19_03144 0.57 +0.7
434,217 + MPMX19_03144 0.57 -1.1
434,217 + MPMX19_03144 0.57 -2.3
434,217 + MPMX19_03144 0.57 -0.3
434,217 + MPMX19_03144 0.57 +1.9
434,218 - MPMX19_03144 0.57 -0.9
434,218 - MPMX19_03144 0.57 -1.2
434,218 - MPMX19_03144 0.57 -0.3
434,218 - MPMX19_03144 0.57 -0.9
434,218 - MPMX19_03144 0.57 -0.6
434,218 - MPMX19_03144 0.57 -2.3
434,218 - MPMX19_03144 0.57 +0.7
434,218 - MPMX19_03144 0.57 -2.0
434,218 - MPMX19_03144 0.57 +1.7
434,218 - MPMX19_03144 0.57 -0.3
434,247 + MPMX19_03144 0.60 -1.3
434,247 + MPMX19_03144 0.60 -2.1
434,248 - MPMX19_03144 0.60 -0.5
434,248 - MPMX19_03144 0.60 -0.6
434,248 - MPMX19_03144 0.60 -2.0
434,344 + MPMX19_03144 0.70 +2.0
434,344 + MPMX19_03144 0.70 +0.4
434,361 + MPMX19_03144 0.72 -1.8
434,362 - MPMX19_03144 0.72 -3.5
434,362 - MPMX19_03144 0.72 -1.3
434,362 - MPMX19_03144 0.72 -1.7
434,406 + MPMX19_03144 0.77 -0.7
434,406 + MPMX19_03144 0.77 -2.1
434,406 + MPMX19_03144 0.77 -1.1
434,406 + MPMX19_03144 0.77 -0.3
434,406 + MPMX19_03144 0.77 -1.5
434,406 + MPMX19_03144 0.77 -0.6
434,406 + MPMX19_03144 0.77 +1.7
434,406 + MPMX19_03144 0.77 -2.6
434,406 + MPMX19_03144 0.77 -1.8
434,406 + MPMX19_03144 0.77 +0.2
434,406 + MPMX19_03144 0.77 +0.3
434,406 + MPMX19_03144 0.77 -1.3
434,406 + MPMX19_03144 0.77 +0.1
434,406 + MPMX19_03144 0.77 +0.9
434,407 - MPMX19_03144 0.77 -1.5
434,407 - MPMX19_03144 0.77 -0.3
434,407 - MPMX19_03144 0.77 -0.5
434,407 - MPMX19_03144 0.77 +0.1
434,801 + MPMX19_03145 0.15 -1.1
434,801 + MPMX19_03145 0.15 +1.7
434,801 + MPMX19_03145 0.15 -0.5
434,801 + MPMX19_03145 0.15 +0.1
434,801 + MPMX19_03145 0.15 -0.3
434,802 - MPMX19_03145 0.15 -1.1
434,802 - MPMX19_03145 0.15 -0.1
434,802 - MPMX19_03145 0.15 -2.1
434,802 - MPMX19_03145 0.15 -1.7
434,802 - MPMX19_03145 0.15 -1.3
434,802 - MPMX19_03145 0.15 -0.9
434,804 + MPMX19_03145 0.15 +0.3
434,804 + MPMX19_03145 0.15 -1.7
434,804 + MPMX19_03145 0.15 -0.3
434,804 + MPMX19_03145 0.15 -0.7
434,805 - MPMX19_03145 0.15 -0.7
434,805 - MPMX19_03145 0.15 -0.3
434,805 - MPMX19_03145 0.15 -0.7
434,918 + MPMX19_03145 0.28 +0.7
434,918 + MPMX19_03145 0.28 -0.2
434,918 + MPMX19_03145 0.28 -1.5
434,919 - MPMX19_03145 0.28 -0.9
434,919 - MPMX19_03145 0.28 -1.2
434,919 - MPMX19_03145 0.28 -0.5
435,020 + MPMX19_03145 0.40 -1.0
435,020 + MPMX19_03145 0.40 -3.7
435,020 + MPMX19_03145 0.40 -1.5
435,020 + MPMX19_03145 0.40 +0.8
435,020 + MPMX19_03145 0.40 -0.3
435,020 + MPMX19_03145 0.40 -0.3
435,020 + MPMX19_03145 0.40 -1.4
435,020 + MPMX19_03145 0.40 -0.3
435,020 + MPMX19_03145 0.40 -0.3
435,020 + MPMX19_03145 0.40 -0.9
435,020 + MPMX19_03145 0.40 -1.5
435,020 + MPMX19_03145 0.40 -0.7
435,020 + MPMX19_03145 0.40 -0.9
435,020 + MPMX19_03145 0.40 -1.1
435,020 + MPMX19_03145 0.40 +0.1
435,020 + MPMX19_03145 0.40 -1.1
435,020 + MPMX19_03145 0.40 +0.7
435,020 + MPMX19_03145 0.40 +0.7
435,021 - MPMX19_03145 0.40 -0.7
435,021 - MPMX19_03145 0.40 -2.1
435,021 - MPMX19_03145 0.40 -0.1
435,021 - MPMX19_03145 0.40 +0.1
435,021 - MPMX19_03145 0.40 +0.5
435,021 - MPMX19_03145 0.40 -0.3
435,021 - MPMX19_03145 0.40 +0.4
435,021 - MPMX19_03145 0.40 -1.9
435,021 - MPMX19_03145 0.40 -1.8
435,021 - MPMX19_03145 0.40 -0.2
435,021 - MPMX19_03145 0.40 -0.4
435,021 - MPMX19_03145 0.40 -1.4
435,249 - MPMX19_03145 0.66 +1.7
435,249 - MPMX19_03145 0.66 -0.3
435,305 + MPMX19_03145 0.72 -1.1
435,305 + MPMX19_03145 0.72 +1.3
435,305 + MPMX19_03145 0.72 -0.2
435,305 + MPMX19_03145 0.72 +0.4
435,305 + MPMX19_03145 0.72 -1.0
435,305 + MPMX19_03145 0.72 -1.3
435,306 - MPMX19_03145 0.72 -0.9
435,306 - MPMX19_03145 0.72 +0.7
435,306 - MPMX19_03145 0.72 +1.3
435,431 + MPMX19_03145 0.86 -1.5
435,431 + MPMX19_03145 0.86 -1.3
435,432 - MPMX19_03145 0.86 -0.3
435,432 - MPMX19_03145 0.86 +1.7
435,432 - MPMX19_03145 0.86 -0.3
435,470 + -0.7
435,470 + +0.1
435,470 + -1.7
435,470 + -0.7
435,470 + -0.3
435,470 + +1.4
435,470 + -2.0
435,470 + +0.7
435,470 + -2.9
435,470 + -0.9
435,471 - +0.1
435,471 - -1.5
435,471 - -0.9
435,471 - -1.8
435,471 - +1.1
435,471 - +4.0
435,471 - -2.3
435,503 + -1.1
435,503 + -0.1
435,503 + +0.9
435,503 + +2.1
435,504 - +0.7
435,504 - -1.1
435,504 - -1.5

Or see this region's nucleotide sequence