Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03089

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03087 and MPMX19_03088 overlap by 4 nucleotidesMPMX19_03088 and MPMX19_03089 are separated by 284 nucleotidesMPMX19_03089 and MPMX19_03090 overlap by 4 nucleotides MPMX19_03087: MPMX19_03087 - Protein FecR, at 358,310 to 359,257 _03087 MPMX19_03088: MPMX19_03088 - putative RNA polymerase sigma factor FecI, at 359,254 to 359,760 _03088 MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253 _03089 MPMX19_03090: MPMX19_03090 - Macrolide export ATP-binding/permease protein MacB, at 361,250 to 363,181 _03090 Position (kb) 360 361 362Strain fitness (log2 ratio) -3 -2 -1 0 1at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.712 kb on - strandat 359.806 kb on + strandat 359.807 kb on - strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.976 kb on + strandat 359.985 kb on - strandat 360.078 kb on + strandat 360.078 kb on + strandat 360.079 kb on - strandat 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.492 kb on + strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.604 kb on - strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.592 kb on + strand, within MPMX19_03090at 361.593 kb on - strand, within MPMX19_03090at 361.946 kb on - strand, within MPMX19_03090at 361.981 kb on + strand, within MPMX19_03090at 362.106 kb on + strand, within MPMX19_03090at 362.106 kb on + strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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359,582 + MPMX19_03088 0.65 -0.2
359,582 + MPMX19_03088 0.65 -1.2
359,582 + MPMX19_03088 0.65 -1.3
359,582 + MPMX19_03088 0.65 -3.2
359,582 + MPMX19_03088 0.65 -0.7
359,583 - MPMX19_03088 0.65 +0.3
359,583 - MPMX19_03088 0.65 +0.1
359,583 - MPMX19_03088 0.65 -0.3
359,583 - MPMX19_03088 0.65 -0.8
359,636 + MPMX19_03088 0.75 -0.7
359,636 + MPMX19_03088 0.75 -0.7
359,636 + MPMX19_03088 0.75 -1.7
359,636 + MPMX19_03088 0.75 -2.5
359,636 + MPMX19_03088 0.75 -2.3
359,636 + MPMX19_03088 0.75 -2.3
359,636 + MPMX19_03088 0.75 -1.5
359,636 + MPMX19_03088 0.75 -1.5
359,636 + MPMX19_03088 0.75 -1.6
359,637 - MPMX19_03088 0.76 -1.3
359,637 - MPMX19_03088 0.76 -0.9
359,637 - MPMX19_03088 0.76 +1.2
359,637 - MPMX19_03088 0.76 -0.9
359,637 - MPMX19_03088 0.76 -1.3
359,637 - MPMX19_03088 0.76 -0.3
359,637 - MPMX19_03088 0.76 +1.4
359,637 - MPMX19_03088 0.76 +0.4
359,637 - MPMX19_03088 0.76 -1.8
359,637 - MPMX19_03088 0.76 -0.8
359,711 + -0.9
359,711 + -0.7
359,711 + -1.3
359,711 + -0.2
359,711 + -2.0
359,711 + -2.4
359,712 - +0.4
359,806 + -2.7
359,807 - +0.7
359,905 + -0.8
359,905 + -0.9
359,905 + -0.7
359,905 + -2.2
359,905 + -1.8
359,905 + -0.7
359,905 + +0.2
359,905 + -1.2
359,905 + -0.7
359,906 - -0.9
359,906 - -0.1
359,906 - -1.5
359,906 - -0.3
359,906 - -0.7
359,906 - -0.3
359,906 - -1.2
359,976 + -0.9
359,985 - +0.3
360,078 + -0.8
360,078 + +0.3
360,079 - +0.3
360,188 + MPMX19_03089 0.12 -0.7
360,188 + MPMX19_03089 0.12 -2.6
360,188 + MPMX19_03089 0.12 -0.7
360,237 + MPMX19_03089 0.16 -0.9
360,237 + MPMX19_03089 0.16 -0.2
360,238 - MPMX19_03089 0.16 -1.2
360,238 - MPMX19_03089 0.16 -0.9
360,238 - MPMX19_03089 0.16 -2.3
360,238 - MPMX19_03089 0.16 -1.1
360,238 - MPMX19_03089 0.16 +0.3
360,492 + MPMX19_03089 0.37 -0.7
360,493 - MPMX19_03089 0.37 -0.3
360,493 - MPMX19_03089 0.37 -1.5
360,493 - MPMX19_03089 0.37 -1.7
360,604 - MPMX19_03089 0.46 -0.9
360,615 + MPMX19_03089 0.47 -1.2
360,615 + MPMX19_03089 0.47 -1.8
360,615 + MPMX19_03089 0.47 -2.3
360,615 + MPMX19_03089 0.47 -0.3
360,615 + MPMX19_03089 0.47 +0.4
360,615 + MPMX19_03089 0.47 -1.0
360,615 + MPMX19_03089 0.47 +0.7
360,615 + MPMX19_03089 0.47 +0.8
360,616 - MPMX19_03089 0.47 -1.3
360,616 - MPMX19_03089 0.47 +0.1
360,616 - MPMX19_03089 0.47 -1.5
360,616 - MPMX19_03089 0.47 -1.2
360,616 - MPMX19_03089 0.47 +0.3
360,616 - MPMX19_03089 0.47 -1.8
360,616 - MPMX19_03089 0.47 -1.3
360,616 - MPMX19_03089 0.47 +0.7
360,616 - MPMX19_03089 0.47 +1.5
360,616 - MPMX19_03089 0.47 +0.1
360,681 + MPMX19_03089 0.53 -0.9
360,681 + MPMX19_03089 0.53 +1.1
360,681 + MPMX19_03089 0.53 +0.7
360,681 + MPMX19_03089 0.53 -0.8
360,681 + MPMX19_03089 0.53 +0.7
360,681 + MPMX19_03089 0.53 -1.5
360,682 - MPMX19_03089 0.53 -0.7
360,682 - MPMX19_03089 0.53 +0.5
360,786 + MPMX19_03089 0.61 -0.2
360,786 + MPMX19_03089 0.61 -1.4
360,786 + MPMX19_03089 0.61 +1.1
360,786 + MPMX19_03089 0.61 +0.8
360,786 + MPMX19_03089 0.61 -0.8
360,787 - MPMX19_03089 0.61 +0.7
360,787 - MPMX19_03089 0.61 -0.7
360,787 - MPMX19_03089 0.61 -0.7
360,787 - MPMX19_03089 0.61 -0.3
360,787 - MPMX19_03089 0.61 -0.1
360,933 + MPMX19_03089 0.73 -1.7
360,933 + MPMX19_03089 0.73 +0.2
360,933 + MPMX19_03089 0.73 +0.7
360,933 + MPMX19_03089 0.73 -0.3
360,934 - MPMX19_03089 0.74 -0.7
360,934 - MPMX19_03089 0.74 -0.9
360,934 - MPMX19_03089 0.74 -1.2
360,934 - MPMX19_03089 0.74 +0.1
360,934 - MPMX19_03089 0.74 +0.9
361,292 + +0.1
361,292 + -0.1
361,292 + -0.7
361,292 + -0.2
361,292 + -1.3
361,293 - -0.7
361,293 - -0.9
361,293 - -1.7
361,293 - +0.1
361,293 - -1.3
361,293 - -1.7
361,538 + MPMX19_03090 0.15 -1.3
361,538 + MPMX19_03090 0.15 -1.0
361,538 + MPMX19_03090 0.15 +1.2
361,538 + MPMX19_03090 0.15 +0.2
361,538 + MPMX19_03090 0.15 +0.3
361,538 + MPMX19_03090 0.15 -0.7
361,539 - MPMX19_03090 0.15 -1.3
361,539 - MPMX19_03090 0.15 -1.3
361,539 - MPMX19_03090 0.15 -1.2
361,539 - MPMX19_03090 0.15 -1.9
361,539 - MPMX19_03090 0.15 -0.9
361,539 - MPMX19_03090 0.15 -0.9
361,539 - MPMX19_03090 0.15 -0.7
361,539 - MPMX19_03090 0.15 +0.1
361,539 - MPMX19_03090 0.15 -1.8
361,592 + MPMX19_03090 0.18 -1.3
361,593 - MPMX19_03090 0.18 -1.3
361,946 - MPMX19_03090 0.36 +0.7
361,981 + MPMX19_03090 0.38 -0.9
362,106 + MPMX19_03090 0.44 -0.7
362,106 + MPMX19_03090 0.44 +0.1
362,107 - MPMX19_03090 0.44 -1.3
362,107 - MPMX19_03090 0.44 -0.3
362,107 - MPMX19_03090 0.44 -0.3
362,183 + MPMX19_03090 0.48 -0.0
362,183 + MPMX19_03090 0.48 +0.7
362,183 + MPMX19_03090 0.48 -1.3
362,183 + MPMX19_03090 0.48 +0.1
362,183 + MPMX19_03090 0.48 -0.2
362,183 + MPMX19_03090 0.48 -0.5
362,183 + MPMX19_03090 0.48 -0.7
362,183 + MPMX19_03090 0.48 -1.6
362,183 + MPMX19_03090 0.48 +0.3
362,183 + MPMX19_03090 0.48 +0.1
362,183 + MPMX19_03090 0.48 +0.7
362,184 - MPMX19_03090 0.48 -0.9
362,184 - MPMX19_03090 0.48 -0.4
362,184 - MPMX19_03090 0.48 +0.7
362,184 - MPMX19_03090 0.48 -0.7
362,184 - MPMX19_03090 0.48 +0.1
362,184 - MPMX19_03090 0.48 -0.9
362,184 - MPMX19_03090 0.48 -0.3
362,184 - MPMX19_03090 0.48 -0.9
362,184 - MPMX19_03090 0.48 -0.9

Or see this region's nucleotide sequence