Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02983

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02982 and MPMX19_02983 are separated by 285 nucleotidesMPMX19_02983 and MPMX19_02984 are separated by 98 nucleotides MPMX19_02982: MPMX19_02982 - Octopine catabolism/uptake operon regulatory protein OccR, at 244,267 to 245,220 _02982 MPMX19_02983: MPMX19_02983 - hypothetical protein, at 245,506 to 246,555 _02983 MPMX19_02984: MPMX19_02984 - Spermidine/putrescine import ATP-binding protein PotA, at 246,654 to 247,730 _02984 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 244.594 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.261 kb on + strandat 245.356 kb on - strandat 245.356 kb on - strandat 245.376 kb on + strandat 245.377 kb on - strandat 245.492 kb on - strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.612 kb on - strand, within MPMX19_02983at 245.612 kb on - strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.837 kb on - strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.256 kb on + strand, within MPMX19_02983at 246.451 kb on + strandat 246.558 kb on + strandat 246.558 kb on + strandat 246.559 kb on - strandat 246.559 kb on - strandat 246.567 kb on - strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.684 kb on + strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.685 kb on - strandat 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.295 kb on - strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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244,594 + MPMX19_02982 0.34 -1.5
245,011 + MPMX19_02982 0.78 -1.4
245,011 + MPMX19_02982 0.78 -1.2
245,011 + MPMX19_02982 0.78 -0.9
245,011 + MPMX19_02982 0.78 -1.8
245,011 + MPMX19_02982 0.78 +1.1
245,011 + MPMX19_02982 0.78 -0.7
245,011 + MPMX19_02982 0.78 -0.7
245,011 + MPMX19_02982 0.78 -0.4
245,012 - MPMX19_02982 0.78 +2.2
245,012 - MPMX19_02982 0.78 -0.2
245,012 - MPMX19_02982 0.78 -0.8
245,012 - MPMX19_02982 0.78 -1.5
245,012 - MPMX19_02982 0.78 -0.2
245,012 - MPMX19_02982 0.78 -2.9
245,261 + +1.1
245,356 - -1.7
245,356 - -0.5
245,376 + -2.8
245,377 - +1.6
245,492 - +1.2
245,599 + -0.8
245,599 + +0.6
245,599 + -0.7
245,599 + +0.1
245,599 + +2.6
245,599 + +0.3
245,599 + -0.7
245,599 + -1.7
245,599 + -1.3
245,599 + -0.7
245,599 + -1.9
245,600 - -0.0
245,600 - +1.6
245,600 - -1.2
245,600 - +1.9
245,600 - +0.6
245,600 - -1.1
245,600 - -1.2
245,600 - -2.2
245,600 - +1.1
245,600 - +0.2
245,600 - -0.6
245,600 - -0.4
245,600 - -0.4
245,600 - -0.4
245,600 - -1.4
245,612 - MPMX19_02983 0.10 -0.7
245,612 - MPMX19_02983 0.10 +0.2
245,689 + MPMX19_02983 0.17 -2.1
245,689 + MPMX19_02983 0.17 +0.5
245,689 + MPMX19_02983 0.17 -0.2
245,689 + MPMX19_02983 0.17 -0.9
245,690 - MPMX19_02983 0.18 -0.9
245,690 - MPMX19_02983 0.18 -2.7
245,690 - MPMX19_02983 0.18 +0.8
245,785 + MPMX19_02983 0.27 -0.5
245,785 + MPMX19_02983 0.27 -0.4
245,785 + MPMX19_02983 0.27 -0.7
245,785 + MPMX19_02983 0.27 -0.2
245,785 + MPMX19_02983 0.27 -2.1
245,785 + MPMX19_02983 0.27 -0.9
245,785 + MPMX19_02983 0.27 -2.5
245,785 + MPMX19_02983 0.27 -0.4
245,785 + MPMX19_02983 0.27 -2.4
245,786 - MPMX19_02983 0.27 +0.6
245,786 - MPMX19_02983 0.27 -0.3
245,786 - MPMX19_02983 0.27 -1.4
245,836 + MPMX19_02983 0.31 -1.4
245,836 + MPMX19_02983 0.31 -0.7
245,837 - MPMX19_02983 0.32 +0.8
245,848 + MPMX19_02983 0.33 -1.3
245,848 + MPMX19_02983 0.33 -0.9
245,848 + MPMX19_02983 0.33 +0.1
245,848 + MPMX19_02983 0.33 -0.4
245,848 + MPMX19_02983 0.33 -0.9
245,849 - MPMX19_02983 0.33 -0.7
245,849 - MPMX19_02983 0.33 +0.3
245,849 - MPMX19_02983 0.33 -0.2
245,849 - MPMX19_02983 0.33 +0.1
245,914 + MPMX19_02983 0.39 -0.9
245,914 + MPMX19_02983 0.39 -1.1
245,915 - MPMX19_02983 0.39 -1.5
245,915 - MPMX19_02983 0.39 -0.4
245,926 + MPMX19_02983 0.40 -0.9
245,926 + MPMX19_02983 0.40 +1.6
245,926 + MPMX19_02983 0.40 -0.9
245,926 + MPMX19_02983 0.40 -0.8
245,927 - MPMX19_02983 0.40 +1.9
245,927 - MPMX19_02983 0.40 -0.4
245,927 - MPMX19_02983 0.40 +0.1
246,025 + MPMX19_02983 0.49 -0.7
246,025 + MPMX19_02983 0.49 -0.7
246,025 + MPMX19_02983 0.49 -0.8
246,026 - MPMX19_02983 0.50 -0.9
246,026 - MPMX19_02983 0.50 +0.5
246,026 - MPMX19_02983 0.50 -0.2
246,026 - MPMX19_02983 0.50 +0.3
246,026 - MPMX19_02983 0.50 -0.9
246,026 - MPMX19_02983 0.50 +0.6
246,026 - MPMX19_02983 0.50 +0.8
246,026 - MPMX19_02983 0.50 +0.3
246,026 - MPMX19_02983 0.50 -1.3
246,026 - MPMX19_02983 0.50 +1.6
246,026 - MPMX19_02983 0.50 -1.4
246,136 + MPMX19_02983 0.60 -0.7
246,136 + MPMX19_02983 0.60 -1.5
246,136 + MPMX19_02983 0.60 +0.3
246,137 - MPMX19_02983 0.60 -0.8
246,137 - MPMX19_02983 0.60 -0.8
246,137 - MPMX19_02983 0.60 -1.2
246,137 - MPMX19_02983 0.60 +0.8
246,137 - MPMX19_02983 0.60 +0.6
246,256 + MPMX19_02983 0.71 -1.9
246,451 + -1.7
246,558 + -1.4
246,558 + +0.6
246,559 - -0.5
246,559 - -0.5
246,567 - -0.7
246,684 + -2.9
246,684 + +0.2
246,684 + -0.7
246,684 + -0.2
246,684 + +0.3
246,684 + +1.7
246,684 + -1.7
246,685 - -0.9
246,685 - -2.4
246,685 - +1.7
246,685 - -0.2
246,685 - +2.2
246,685 - +0.8
246,927 + MPMX19_02984 0.25 +0.3
246,927 + MPMX19_02984 0.25 +0.2
246,927 + MPMX19_02984 0.25 -0.7
246,927 + MPMX19_02984 0.25 -0.3
246,927 + MPMX19_02984 0.25 -0.7
246,927 + MPMX19_02984 0.25 -2.0
246,927 + MPMX19_02984 0.25 -1.2
246,927 + MPMX19_02984 0.25 -0.2
246,927 + MPMX19_02984 0.25 +0.9
246,927 + MPMX19_02984 0.25 -0.3
246,927 + MPMX19_02984 0.25 -1.7
246,927 + MPMX19_02984 0.25 -0.0
246,927 + MPMX19_02984 0.25 -1.8
246,927 + MPMX19_02984 0.25 -1.4
246,927 + MPMX19_02984 0.25 -1.0
246,927 + MPMX19_02984 0.25 -0.9
246,927 + MPMX19_02984 0.25 -1.2
246,928 - MPMX19_02984 0.25 +0.7
246,928 - MPMX19_02984 0.25 -2.3
246,928 - MPMX19_02984 0.25 -0.3
246,928 - MPMX19_02984 0.25 -0.9
246,928 - MPMX19_02984 0.25 -1.0
246,928 - MPMX19_02984 0.25 -0.9
246,928 - MPMX19_02984 0.25 +1.2
246,928 - MPMX19_02984 0.25 +1.7
246,928 - MPMX19_02984 0.25 -1.6
246,928 - MPMX19_02984 0.25 -0.8
246,928 - MPMX19_02984 0.25 -0.9
246,928 - MPMX19_02984 0.25 +0.3
246,928 - MPMX19_02984 0.25 -1.2
246,928 - MPMX19_02984 0.25 -1.5
246,928 - MPMX19_02984 0.25 +0.4
246,928 - MPMX19_02984 0.25 +1.1
246,928 - MPMX19_02984 0.25 +0.3
246,928 - MPMX19_02984 0.25 +0.5
246,928 - MPMX19_02984 0.25 -1.0
246,928 - MPMX19_02984 0.25 -1.3
247,053 + MPMX19_02984 0.37 +0.1
247,053 + MPMX19_02984 0.37 -0.5
247,295 - MPMX19_02984 0.60 +0.1
247,341 + MPMX19_02984 0.64 -1.3
247,341 + MPMX19_02984 0.64 -0.8
247,342 - MPMX19_02984 0.64 +1.0
247,342 - MPMX19_02984 0.64 -1.3
247,342 - MPMX19_02984 0.64 -0.3
247,342 - MPMX19_02984 0.64 +0.1
247,342 - MPMX19_02984 0.64 -0.9
247,342 - MPMX19_02984 0.64 -1.5
247,342 - MPMX19_02984 0.64 +0.3

Or see this region's nucleotide sequence