Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02918 and MPMX19_02919 are separated by 16 nucleotides
MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898
_02916
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
MPMX19_02919: MPMX19_02919 - hypothetical protein, at 172,821 to 173,837
_02919
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.487 kb on + strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 171,040 + MPMX19_02917 0.14 -0.3 171,040 + MPMX19_02917 0.14 -0.5 171,040 + MPMX19_02917 0.14 -0.3 171,040 + MPMX19_02917 0.14 -1.1 171,040 + MPMX19_02917 0.14 +0.5 171,040 + MPMX19_02917 0.14 +0.1 171,040 + MPMX19_02917 0.14 +0.1 171,041 - MPMX19_02917 0.15 -1.3 171,041 - MPMX19_02917 0.15 -0.3 171,041 - MPMX19_02917 0.15 -2.7 171,041 - MPMX19_02917 0.15 -0.7 171,041 - MPMX19_02917 0.15 -1.9 171,041 - MPMX19_02917 0.15 -0.8 171,487 + MPMX19_02917 0.59 -2.0 171,488 - MPMX19_02917 0.59 -0.2 171,488 - MPMX19_02917 0.59 -1.5 171,598 + MPMX19_02917 0.70 -0.0 171,598 + MPMX19_02917 0.70 -0.7 171,598 + MPMX19_02917 0.70 +1.7 171,598 + MPMX19_02917 0.70 -0.8 171,598 + MPMX19_02917 0.70 +0.7 171,599 - MPMX19_02917 0.70 -0.8 171,599 - MPMX19_02917 0.70 -0.9 172,413 + MPMX19_02918 0.57 -0.1 172,413 + MPMX19_02918 0.57 -1.4 172,413 + MPMX19_02918 0.57 -0.3 172,413 + MPMX19_02918 0.57 -1.3 172,413 + MPMX19_02918 0.57 -0.3 172,413 + MPMX19_02918 0.57 -0.0 172,413 + MPMX19_02918 0.57 -0.7 172,413 + MPMX19_02918 0.57 +0.2 172,413 + MPMX19_02918 0.57 -0.9 172,414 - MPMX19_02918 0.57 -0.3 172,414 - MPMX19_02918 0.57 -1.7 172,414 - MPMX19_02918 0.57 -1.3 172,414 - MPMX19_02918 0.57 +1.1 172,701 + MPMX19_02918 0.89 -2.7 172,701 + MPMX19_02918 0.89 -1.9 172,702 - MPMX19_02918 0.89 -1.0 172,702 - MPMX19_02918 0.89 -0.7 172,702 - MPMX19_02918 0.89 -0.3 172,791 + +0.1 172,791 + -2.4 172,791 + -0.9 172,791 + +0.3 172,791 + +0.7 172,791 + -0.6 172,791 + -0.9 172,791 + +0.5 172,791 + -0.7 172,791 + -1.1 172,791 + +0.7 172,791 + -0.6 172,791 + -0.6 172,792 - -2.0 172,792 - -1.5 172,792 - -1.8 172,792 - +0.1 172,792 - +0.8 172,792 - -1.3 172,792 - +0.1 172,792 - -0.1 172,792 - -0.7 172,792 - +0.7 172,792 - -1.3 172,792 - -0.7 172,792 - +0.0
Or see this region's nucleotide sequence