Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02784 and MPMX19_02785 overlap by 4 nucleotides MPMX19_02785 and MPMX19_02786 are separated by 28 nucleotides MPMX19_02786 and MPMX19_02787 overlap by 4 nucleotides
MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117
_02784
MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497
_02785
MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581
_02786
MPMX19_02787: MPMX19_02787 - (R)-benzylsuccinyl-CoA dehydrogenase, at 19,578 to 20,774
_02787
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.561 kb on + strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.068 kb on + strand at 18.069 kb on - strand at 18.069 kb on - strand at 18.696 kb on - strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.750 kb on - strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.921 kb on - strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.987 kb on - strand, within MPMX19_02786 at 19.014 kb on - strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.681 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.954 kb on + strand, within MPMX19_02787 at 19.954 kb on + strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 17,561 + MPMX19_02784 0.22 +0.1 17,775 - MPMX19_02784 0.52 +0.5 17,775 - MPMX19_02784 0.52 -3.1 17,775 - MPMX19_02784 0.52 -0.1 17,775 - MPMX19_02784 0.52 -0.9 17,775 - MPMX19_02784 0.52 +1.7 17,775 - MPMX19_02784 0.52 +1.1 17,780 + MPMX19_02784 0.53 -0.2 17,780 + MPMX19_02784 0.53 +1.7 17,780 + MPMX19_02784 0.53 -1.8 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 +0.1 17,780 + MPMX19_02784 0.53 -0.7 17,780 + MPMX19_02784 0.53 -0.6 17,780 + MPMX19_02784 0.53 +0.3 17,780 + MPMX19_02784 0.53 +0.1 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -0.7 17,780 + MPMX19_02784 0.53 -1.5 17,780 + MPMX19_02784 0.53 -0.8 17,781 - MPMX19_02784 0.53 -2.7 17,781 - MPMX19_02784 0.53 -2.8 17,781 - MPMX19_02784 0.53 +0.7 17,781 - MPMX19_02784 0.53 -1.1 17,781 - MPMX19_02784 0.53 -0.9 17,781 - MPMX19_02784 0.53 -1.1 17,781 - MPMX19_02784 0.53 -1.5 17,781 - MPMX19_02784 0.53 -1.9 17,781 - MPMX19_02784 0.53 -1.1 18,038 + MPMX19_02784 0.89 +0.9 18,038 + MPMX19_02784 0.89 +1.1 18,038 + MPMX19_02784 0.89 -0.3 18,038 + MPMX19_02784 0.89 -1.1 18,038 + MPMX19_02784 0.89 +0.1 18,038 + MPMX19_02784 0.89 -1.6 18,038 + MPMX19_02784 0.89 -1.4 18,039 - MPMX19_02784 0.89 -0.7 18,039 - MPMX19_02784 0.89 -0.7 18,039 - MPMX19_02784 0.89 -1.3 18,039 - MPMX19_02784 0.89 -0.9 18,039 - MPMX19_02784 0.89 -0.3 18,039 - MPMX19_02784 0.89 -1.7 18,039 - MPMX19_02784 0.89 +0.3 18,068 + +0.1 18,069 - +0.4 18,069 - -1.2 18,696 - MPMX19_02786 0.16 -1.3 18,749 + MPMX19_02786 0.21 -1.7 18,749 + MPMX19_02786 0.21 -1.7 18,750 - MPMX19_02786 0.21 +0.7 18,903 + MPMX19_02786 0.36 -2.7 18,903 + MPMX19_02786 0.36 -1.5 18,903 + MPMX19_02786 0.36 +0.1 18,903 + MPMX19_02786 0.36 +1.7 18,903 + MPMX19_02786 0.36 +0.1 18,903 + MPMX19_02786 0.36 -2.6 18,903 + MPMX19_02786 0.36 +0.4 18,903 + MPMX19_02786 0.36 -0.7 18,903 + MPMX19_02786 0.36 -1.1 18,904 - MPMX19_02786 0.36 -1.6 18,904 - MPMX19_02786 0.36 -0.7 18,904 - MPMX19_02786 0.36 -0.3 18,904 - MPMX19_02786 0.36 -1.1 18,904 - MPMX19_02786 0.36 +1.7 18,904 - MPMX19_02786 0.36 -0.9 18,904 - MPMX19_02786 0.36 -0.3 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -2.1 18,905 + MPMX19_02786 0.36 -1.1 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 +0.3 18,905 + MPMX19_02786 0.36 -2.1 18,905 + MPMX19_02786 0.36 -1.3 18,905 + MPMX19_02786 0.36 +0.3 18,905 + MPMX19_02786 0.36 -2.0 18,905 + MPMX19_02786 0.36 +0.3 18,905 + MPMX19_02786 0.36 -1.8 18,905 + MPMX19_02786 0.36 -0.3 18,905 + MPMX19_02786 0.36 +0.2 18,905 + MPMX19_02786 0.36 +0.9 18,905 + MPMX19_02786 0.36 -0.3 18,905 + MPMX19_02786 0.36 -0.3 18,905 + MPMX19_02786 0.36 +0.2 18,905 + MPMX19_02786 0.36 -0.1 18,905 + MPMX19_02786 0.36 -1.8 18,905 + MPMX19_02786 0.36 -0.4 18,905 + MPMX19_02786 0.36 +1.1 18,906 - MPMX19_02786 0.36 +0.7 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 -0.9 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 -0.8 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -1.2 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 +1.2 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 +1.7 18,906 - MPMX19_02786 0.36 -1.8 18,906 - MPMX19_02786 0.36 -0.8 18,906 - MPMX19_02786 0.36 -2.8 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 -1.5 18,906 - MPMX19_02786 0.36 -0.8 18,906 - MPMX19_02786 0.36 +1.1 18,906 - MPMX19_02786 0.36 -2.3 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 -1.3 18,921 - MPMX19_02786 0.37 -0.3 18,986 + MPMX19_02786 0.44 -0.9 18,986 + MPMX19_02786 0.44 +0.4 18,986 + MPMX19_02786 0.44 +2.5 18,986 + MPMX19_02786 0.44 -0.9 18,987 - MPMX19_02786 0.44 -1.8 19,014 - MPMX19_02786 0.46 +0.1 19,223 + MPMX19_02786 0.66 -0.3 19,223 + MPMX19_02786 0.66 -0.1 19,223 + MPMX19_02786 0.66 -0.9 19,223 + MPMX19_02786 0.66 -1.0 19,223 + MPMX19_02786 0.66 -0.9 19,223 + MPMX19_02786 0.66 -0.9 19,223 + MPMX19_02786 0.66 -0.9 19,223 + MPMX19_02786 0.66 -0.7 19,223 + MPMX19_02786 0.66 +1.2 19,223 + MPMX19_02786 0.66 -0.9 19,223 + MPMX19_02786 0.66 +0.3 19,223 + MPMX19_02786 0.66 +0.1 19,224 - MPMX19_02786 0.66 -0.7 19,224 - MPMX19_02786 0.66 -0.3 19,224 - MPMX19_02786 0.66 +1.1 19,224 - MPMX19_02786 0.66 -1.1 19,224 - MPMX19_02786 0.66 +0.1 19,224 - MPMX19_02786 0.66 -2.8 19,224 - MPMX19_02786 0.66 -0.3 19,615 + -0.6 19,615 + +0.2 19,615 + +0.7 19,615 + +1.4 19,615 + -0.3 19,615 + -1.7 19,615 + +0.2 19,616 - +0.3 19,616 - -1.1 19,616 - -1.1 19,616 - +1.3 19,616 - -0.7 19,616 - -0.3 19,616 - +0.2 19,616 - -0.9 19,637 + -0.7 19,637 + -2.2 19,637 + +0.5 19,637 + -2.5 19,637 + -1.0 19,637 + -1.5 19,637 + -1.7 19,637 + -1.7 19,637 + -1.9 19,637 + +1.3 19,637 + -1.5 19,637 + +0.8 19,638 - +0.7 19,638 - -0.3 19,638 - +0.7 19,638 - +0.3 19,638 - -1.1 19,638 - +0.4 19,638 - +0.7 19,638 - -1.5 19,638 - -0.9 19,638 - +0.1 19,638 - -0.2 19,638 - -0.3 19,638 - -1.1 19,638 - -0.9 19,681 + -2.0 19,687 + -0.7 19,687 + -0.0 19,687 + -0.3 19,688 - -0.1 19,688 - +0.3 19,688 - -0.3 19,954 + MPMX19_02787 0.31 -0.5 19,954 + MPMX19_02787 0.31 -0.3 19,955 - MPMX19_02787 0.31 -0.5 19,955 - MPMX19_02787 0.31 -0.7 19,955 - MPMX19_02787 0.31 +0.2 19,955 - MPMX19_02787 0.31 -2.2 19,955 - MPMX19_02787 0.31 +0.3 19,955 - MPMX19_02787 0.31 -1.1 19,955 - MPMX19_02787 0.31 +0.3 20,536 + MPMX19_02787 0.80 -1.5 20,536 + MPMX19_02787 0.80 +0.1 20,536 + MPMX19_02787 0.80 +0.1 20,536 + MPMX19_02787 0.80 +0.7
Or see this region's nucleotide sequence