Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02015

Experiment: NF_with10percent_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with10percent_fullN
2,103,711	+		MPMX19_02014	0.71	+0.6
2,103,711	+		MPMX19_02014	0.71	-0.7
2,103,711	+		MPMX19_02014	0.71	-0.4
2,103,712	-		MPMX19_02014	0.71	-1.2
2,103,712	-		MPMX19_02014	0.71	-0.4
2,103,712	-		MPMX19_02014	0.71	-0.7
2,103,909	+		MPMX19_02014	0.78	+1.0
2,103,910	-		MPMX19_02014	0.78	+0.4
2,103,981	+		MPMX19_02014	0.81	-1.6
2,103,982	-		MPMX19_02014	0.81	-1.6
2,103,982	-		MPMX19_02014	0.81	-1.5
2,103,982	-		MPMX19_02014	0.81	+1.2
2,103,982	-		MPMX19_02014	0.81	+0.4
2,103,982	-		MPMX19_02014	0.81	+0.2
2,103,982	-		MPMX19_02014	0.81	+0.0
2,104,101	+		MPMX19_02014	0.85	-0.6
2,104,101	+		MPMX19_02014	0.85	-0.1
2,104,101	+		MPMX19_02014	0.85	+0.3
2,104,101	+		MPMX19_02014	0.85	+0.0
2,104,101	+		MPMX19_02014	0.85	-0.4
2,104,101	+		MPMX19_02014	0.85	-0.7
2,104,101	+		MPMX19_02014	0.85	+1.1
2,104,102	-		MPMX19_02014	0.85	+0.1
2,104,102	-		MPMX19_02014	0.85	+0.0
2,104,102	-		MPMX19_02014	0.85	-1.6
2,104,102	-		MPMX19_02014	0.85	+0.0
2,104,102	-		MPMX19_02014	0.85	-2.3
2,104,102	-		MPMX19_02014	0.85	-1.4
2,104,102	-		MPMX19_02014	0.85	-1.0
2,104,102	-		MPMX19_02014	0.85	+0.0
2,104,102	-		MPMX19_02014	0.85	-1.7
2,104,102	-		MPMX19_02014	0.85	+0.3
2,104,311	+				-0.4
2,104,311	+				+0.6
2,104,311	+				-0.6
2,104,312	-				-1.0
2,104,312	-				-0.4
2,104,524	+				-1.4
2,104,524	+				+0.3
2,104,524	+				-1.9
2,104,525	-				-1.6
2,104,525	-				+0.0
2,104,525	-				-0.2
2,104,525	-				+0.0
2,104,525	-				-0.7
2,104,525	-				-1.0
2,104,525	-				-0.4
2,105,609	+		MPMX19_02015	0.62	+0.0
2,105,609	+		MPMX19_02015	0.62	+0.0
2,105,609	+		MPMX19_02015	0.62	-1.0
2,105,609	+		MPMX19_02015	0.62	+1.2
2,105,609	+		MPMX19_02015	0.62	+0.5
2,105,609	+		MPMX19_02015	0.62	-1.7
2,105,609	+		MPMX19_02015	0.62	-1.6
2,105,610	-		MPMX19_02015	0.62	-1.1
2,105,610	-		MPMX19_02015	0.62	-1.4
2,105,610	-		MPMX19_02015	0.62	+0.4
2,105,610	-		MPMX19_02015	0.62	+0.6
2,105,610	-		MPMX19_02015	0.62	-1.9
2,105,723	+		MPMX19_02015	0.69	-1.0
2,105,723	+		MPMX19_02015	0.69	+0.9
2,105,723	+		MPMX19_02015	0.69	-0.8
2,105,723	+		MPMX19_02015	0.69	-1.0
2,105,723	+		MPMX19_02015	0.69	-0.7
2,105,723	+		MPMX19_02015	0.69	+0.3
2,105,723	+		MPMX19_02015	0.69	-0.4
2,105,723	+		MPMX19_02015	0.69	-0.7
2,105,723	+		MPMX19_02015	0.69	-0.7
2,105,724	-		MPMX19_02015	0.69	-1.2
2,105,724	-		MPMX19_02015	0.69	-0.2
2,105,724	-		MPMX19_02015	0.69	-0.9
2,105,724	-		MPMX19_02015	0.69	-0.2
2,105,724	-		MPMX19_02015	0.69	-2.1
2,105,724	-		MPMX19_02015	0.69	-0.7
2,105,804	+		MPMX19_02015	0.74	+0.0
2,105,804	+		MPMX19_02015	0.74	-0.6
2,105,804	+		MPMX19_02015	0.74	-2.9
2,105,805	-		MPMX19_02015	0.74	-1.6
2,105,805	-		MPMX19_02015	0.74	-1.4
2,105,805	-		MPMX19_02015	0.74	+0.0
2,106,122	+				-1.0
2,106,122	+				-1.0
2,106,122	+				+0.6
2,106,122	+				-0.2
2,106,122	+				-1.0
2,106,122	+				+0.9
2,106,122	+				+0.6
2,106,123	-				-0.8
2,106,123	-				+1.6
2,106,123	-				+1.0
2,106,158	+				-1.3
2,106,158	+				-0.2
2,106,158	+				-0.7
2,106,158	+				+0.7
2,106,158	+				+0.0
2,106,158	+				+1.0
2,106,158	+				-2.0
2,106,158	+				+1.3
2,106,158	+				+1.3
2,106,158	+				+0.0
2,106,158	+				-0.9
2,106,158	+				-0.4
2,106,158	+				+1.0
2,106,158	+				+1.0
2,106,158	+				-0.7
2,106,158	+				+1.0
2,106,158	+				-0.7
2,106,158	+				+0.3
2,106,159	-				-0.6
2,106,159	-				+0.0
2,106,159	-				+0.4
2,106,159	-				-1.7
2,106,159	-				+0.0
2,106,159	-				-2.8
2,106,159	-				-2.5
2,106,159	-				+0.6
2,106,159	-				-1.6
2,106,159	-				+0.0
2,106,159	-				-1.9
2,106,159	-				-1.2
2,106,159	-				+0.7
2,106,159	-				+0.3
2,106,159	-				-0.4
2,106,159	-				-1.0
2,106,159	-				-0.3
2,106,207	-				-1.4
2,106,207	-				-0.4
2,106,238	-				-1.0
2,106,329	+				+0.1
2,106,329	+				+0.5
2,106,330	-				-0.3
2,106,330	-				+0.8
2,106,330	-				-0.4
2,106,330	-				+1.0
2,106,330	-				-0.7
2,106,330	-				-2.2
2,106,330	-				-0.7
2,106,330	-				-1.1
2,106,425	+				-1.2
2,106,425	+				+0.0
2,106,425	+				-1.0
2,106,426	-				-0.7
2,106,426	-				-0.4
2,106,438	+				-0.4
2,106,438	+				-0.4
2,106,438	+				+0.4
2,106,438	+				+1.0
2,106,438	+				-0.9
2,106,438	+				-0.9
2,106,438	+				-1.3
2,106,438	+				-1.1
2,106,438	+				-1.7
2,106,439	-				-0.4
2,106,439	-				+1.6
2,106,439	-				-0.2
2,106,439	-				-0.4
2,106,439	-				-1.7
2,106,439	-				-0.4
2,106,439	-				+0.8
2,106,439	-				+0.0
2,106,470	+				+1.1
2,106,470	+				+1.6
2,106,470	+				-2.0
2,106,470	+				-2.3
2,106,470	+				-0.8
2,106,470	+				-0.7
2,106,471	-				-0.3
2,106,471	-				-2.0
2,106,471	-				+0.3
2,106,471	-				-0.6
2,106,471	-				-0.6
2,106,471	-				+1.0
2,106,471	-				-0.2
2,106,471	-				-1.0
2,106,471	-				-0.2
2,106,517	+				-1.5
2,106,548	+				-1.2
2,106,548	+				+0.2
2,106,548	+				-0.9
2,106,548	+				-2.1
2,106,548	+				+0.0
2,106,548	+				-0.4
2,106,548	+				+0.0
2,106,548	+				-0.7
2,106,548	+				+0.0
2,106,548	+				+1.6
2,106,548	+				-0.7
2,106,548	+				-2.6
2,106,548	+				-0.5
2,106,548	+				+0.0
2,106,548	+				+0.9
2,106,548	+				-0.5
2,106,548	+				-0.7
2,106,548	+				-1.4
2,106,548	+				+0.8
2,106,548	+				-1.0
2,106,548	+				+0.3
2,106,548	+				-2.1
2,106,548	+				+1.6
2,106,548	+				-1.9
2,106,548	+				-0.5
2,106,548	+				-0.6
2,106,548	+				+2.0
2,106,548	+				-1.6
2,106,548	+				-1.4
2,106,549	-		MPMX19_02016	0.10	-0.7
2,106,549	-		MPMX19_02016	0.10	-0.2
2,106,549	-		MPMX19_02016	0.10	-1.1
2,106,549	-		MPMX19_02016	0.10	-1.4
2,106,549	-		MPMX19_02016	0.10	-0.4
2,106,549	-		MPMX19_02016	0.10	-0.6
2,106,549	-		MPMX19_02016	0.10	-0.3
2,106,549	-		MPMX19_02016	0.10	-1.6
2,106,549	-		MPMX19_02016	0.10	+1.9
2,106,549	-		MPMX19_02016	0.10	-2.0
2,106,549	-		MPMX19_02016	0.10	-0.4
2,106,549	-		MPMX19_02016	0.10	-0.7
2,106,549	-		MPMX19_02016	0.10	+2.3
2,106,549	-		MPMX19_02016	0.10	-0.3
2,106,549	-		MPMX19_02016	0.10	+0.6
2,106,549	-		MPMX19_02016	0.10	-1.0
2,106,549	-		MPMX19_02016	0.10	-0.4
2,106,549	-		MPMX19_02016	0.10	+0.0
2,106,549	-		MPMX19_02016	0.10	-0.9
2,106,549	-		MPMX19_02016	0.10	+0.3
2,106,549	-		MPMX19_02016	0.10	-0.7
2,106,549	-		MPMX19_02016	0.10	-1.0
2,106,549	-		MPMX19_02016	0.10	-1.4
2,106,549	-		MPMX19_02016	0.10	+0.3
2,106,549	-		MPMX19_02016	0.10	+1.0
2,106,549	-		MPMX19_02016	0.10	+0.1
2,106,549	-		MPMX19_02016	0.10	+3.2
2,106,557	+		MPMX19_02016	0.11	-0.4
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	-0.7
2,107,076	+		MPMX19_02016	0.66	+0.2
2,107,076	+		MPMX19_02016	0.66	-1.7
2,107,076	+		MPMX19_02016	0.66	-0.6
2,107,076	+		MPMX19_02016	0.66	-1.4
2,107,076	+		MPMX19_02016	0.66	-0.4
2,107,076	+		MPMX19_02016	0.66	+0.1
2,107,076	+		MPMX19_02016	0.66	-0.7
2,107,076	+		MPMX19_02016	0.66	+1.1
2,107,077	-		MPMX19_02016	0.66	-0.7
2,107,077	-		MPMX19_02016	0.66	-0.9
2,107,077	-		MPMX19_02016	0.66	+0.2
2,107,077	-		MPMX19_02016	0.66	-1.9
2,107,077	-		MPMX19_02016	0.66	-0.2
2,107,077	-		MPMX19_02016	0.66	-0.7
2,107,077	-		MPMX19_02016	0.66	-0.7
2,107,077	-		MPMX19_02016	0.66	-1.0
2,107,077	-		MPMX19_02016	0.66	+1.6
2,107,077	-		MPMX19_02016	0.66	-1.4
2,107,077	-		MPMX19_02016	0.66	-0.6
2,107,077	-		MPMX19_02016	0.66	+0.0
2,107,077	-		MPMX19_02016	0.66	-1.2
2,107,077	-		MPMX19_02016	0.66	-0.3
2,107,077	-		MPMX19_02016	0.66	-1.7
2,107,140	-		MPMX19_02016	0.72	-0.3
2,107,172	+		MPMX19_02016	0.76	-0.4
2,107,172	+		MPMX19_02016	0.76	-1.1
2,107,172	+		MPMX19_02016	0.76	+0.4
2,107,172	+		MPMX19_02016	0.76	-0.5
2,107,172	+		MPMX19_02016	0.76	-1.2
2,107,172	+		MPMX19_02016	0.76	+0.0
2,107,172	+		MPMX19_02016	0.76	-1.0
2,107,172	+		MPMX19_02016	0.76	-0.4
2,107,172	+		MPMX19_02016	0.76	+0.5
2,107,172	+		MPMX19_02016	0.76	-1.6
2,107,172	+		MPMX19_02016	0.76	+0.0
2,107,173	-		MPMX19_02016	0.76	-0.3
2,107,173	-		MPMX19_02016	0.76	-1.3
2,107,173	-		MPMX19_02016	0.76	-1.4
2,107,173	-		MPMX19_02016	0.76	-1.4
2,107,173	-		MPMX19_02016	0.76	+0.2
2,107,173	-		MPMX19_02016	0.76	+0.9
2,107,173	-		MPMX19_02016	0.76	-1.6
2,107,173	-		MPMX19_02016	0.76	+0.0