Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01771

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01769 and MPMX19_01770 are separated by 71 nucleotidesMPMX19_01770 and MPMX19_01771 are separated by 16 nucleotidesMPMX19_01771 and MPMX19_01772 are separated by 13 nucleotides MPMX19_01769: MPMX19_01769 - Cell shape-determining protein MreC, at 1,855,928 to 1,856,797 _01769 MPMX19_01770: MPMX19_01770 - hypothetical protein, at 1,856,869 to 1,857,381 _01770 MPMX19_01771: MPMX19_01771 - Peptidoglycan D,D-transpeptidase MrdA, at 1,857,398 to 1,859,284 _01771 MPMX19_01772: MPMX19_01772 - putative inner membrane transporter YedA, at 1,859,298 to 1,860,218 _01772 Position (kb) 1857 1858 1859 1860Strain fitness (log2 ratio) -2 -1 0 1 2at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.434 kb on + strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.435 kb on - strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.485 kb on + strand, within MPMX19_01772at 1859.486 kb on - strand, within MPMX19_01772at 1859.486 kb on - strand, within MPMX19_01772at 1859.486 kb on - strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.490 kb on + strand, within MPMX19_01772at 1859.491 kb on - strand, within MPMX19_01772at 1859.491 kb on - strand, within MPMX19_01772at 1859.491 kb on - strand, within MPMX19_01772at 1859.491 kb on - strand, within MPMX19_01772at 1859.689 kb on + strand, within MPMX19_01772at 1859.689 kb on + strand, within MPMX19_01772at 1859.689 kb on + strand, within MPMX19_01772at 1859.690 kb on - strand, within MPMX19_01772at 1859.936 kb on + strand, within MPMX19_01772at 1859.936 kb on + strand, within MPMX19_01772at 1860.118 kb on + strand, within MPMX19_01772at 1860.118 kb on + strand, within MPMX19_01772at 1860.118 kb on + strand, within MPMX19_01772at 1860.118 kb on + strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772at 1860.119 kb on - strand, within MPMX19_01772

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,859,434 + MPMX19_01772 0.15 -0.6
1,859,434 + MPMX19_01772 0.15 -0.8
1,859,434 + MPMX19_01772 0.15 -0.3
1,859,434 + MPMX19_01772 0.15 +0.1
1,859,434 + MPMX19_01772 0.15 -0.2
1,859,434 + MPMX19_01772 0.15 +1.1
1,859,434 + MPMX19_01772 0.15 +0.1
1,859,435 - MPMX19_01772 0.15 -1.1
1,859,435 - MPMX19_01772 0.15 -0.9
1,859,435 - MPMX19_01772 0.15 -0.1
1,859,435 - MPMX19_01772 0.15 -1.9
1,859,435 - MPMX19_01772 0.15 -1.6
1,859,435 - MPMX19_01772 0.15 -1.3
1,859,435 - MPMX19_01772 0.15 -2.0
1,859,485 + MPMX19_01772 0.20 -0.9
1,859,485 + MPMX19_01772 0.20 -0.4
1,859,485 + MPMX19_01772 0.20 -0.3
1,859,485 + MPMX19_01772 0.20 +0.7
1,859,485 + MPMX19_01772 0.20 +1.1
1,859,485 + MPMX19_01772 0.20 -1.6
1,859,486 - MPMX19_01772 0.20 -0.3
1,859,486 - MPMX19_01772 0.20 +0.7
1,859,486 - MPMX19_01772 0.20 +0.1
1,859,490 + MPMX19_01772 0.21 -0.9
1,859,490 + MPMX19_01772 0.21 -0.0
1,859,490 + MPMX19_01772 0.21 +0.9
1,859,490 + MPMX19_01772 0.21 +1.7
1,859,490 + MPMX19_01772 0.21 -0.3
1,859,490 + MPMX19_01772 0.21 -0.9
1,859,490 + MPMX19_01772 0.21 -0.4
1,859,490 + MPMX19_01772 0.21 -1.0
1,859,490 + MPMX19_01772 0.21 -0.9
1,859,490 + MPMX19_01772 0.21 -0.3
1,859,490 + MPMX19_01772 0.21 -1.2
1,859,490 + MPMX19_01772 0.21 +1.7
1,859,490 + MPMX19_01772 0.21 +0.4
1,859,491 - MPMX19_01772 0.21 -0.8
1,859,491 - MPMX19_01772 0.21 -0.3
1,859,491 - MPMX19_01772 0.21 -0.6
1,859,491 - MPMX19_01772 0.21 -0.5
1,859,689 + MPMX19_01772 0.42 -0.5
1,859,689 + MPMX19_01772 0.42 -0.9
1,859,689 + MPMX19_01772 0.42 +0.1
1,859,690 - MPMX19_01772 0.43 -0.9
1,859,936 + MPMX19_01772 0.69 -0.3
1,859,936 + MPMX19_01772 0.69 -0.8
1,860,118 + MPMX19_01772 0.89 -1.1
1,860,118 + MPMX19_01772 0.89 +2.1
1,860,118 + MPMX19_01772 0.89 -0.3
1,860,118 + MPMX19_01772 0.89 -1.1
1,860,119 - MPMX19_01772 0.89 -0.3
1,860,119 - MPMX19_01772 0.89 +0.3
1,860,119 - MPMX19_01772 0.89 +0.4
1,860,119 - MPMX19_01772 0.89 +0.4
1,860,119 - MPMX19_01772 0.89 -0.6
1,860,119 - MPMX19_01772 0.89 -0.8
1,860,119 - MPMX19_01772 0.89 +0.1
1,860,119 - MPMX19_01772 0.89 -1.3
1,860,119 - MPMX19_01772 0.89 -0.6
1,860,119 - MPMX19_01772 0.89 -0.3

Or see this region's nucleotide sequence