Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01769 and MPMX19_01770 are separated by 71 nucleotides MPMX19_01770 and MPMX19_01771 are separated by 16 nucleotides MPMX19_01771 and MPMX19_01772 are separated by 13 nucleotides
MPMX19_01769: MPMX19_01769 - Cell shape-determining protein MreC, at 1,855,928 to 1,856,797
_01769
MPMX19_01770: MPMX19_01770 - hypothetical protein, at 1,856,869 to 1,857,381
_01770
MPMX19_01771: MPMX19_01771 - Peptidoglycan D,D-transpeptidase MrdA, at 1,857,398 to 1,859,284
_01771
MPMX19_01772: MPMX19_01772 - putative inner membrane transporter YedA, at 1,859,298 to 1,860,218
_01772
Position (kb)
1857
1858
1859
1860 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.434 kb on + strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.435 kb on - strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.485 kb on + strand, within MPMX19_01772 at 1859.486 kb on - strand, within MPMX19_01772 at 1859.486 kb on - strand, within MPMX19_01772 at 1859.486 kb on - strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.490 kb on + strand, within MPMX19_01772 at 1859.491 kb on - strand, within MPMX19_01772 at 1859.491 kb on - strand, within MPMX19_01772 at 1859.491 kb on - strand, within MPMX19_01772 at 1859.491 kb on - strand, within MPMX19_01772 at 1859.689 kb on + strand, within MPMX19_01772 at 1859.689 kb on + strand, within MPMX19_01772 at 1859.689 kb on + strand, within MPMX19_01772 at 1859.690 kb on - strand, within MPMX19_01772 at 1859.936 kb on + strand, within MPMX19_01772 at 1859.936 kb on + strand, within MPMX19_01772 at 1860.118 kb on + strand, within MPMX19_01772 at 1860.118 kb on + strand, within MPMX19_01772 at 1860.118 kb on + strand, within MPMX19_01772 at 1860.118 kb on + strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772 at 1860.119 kb on - strand, within MPMX19_01772
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 1,859,434 + MPMX19_01772 0.15 -0.6 1,859,434 + MPMX19_01772 0.15 -0.8 1,859,434 + MPMX19_01772 0.15 -0.3 1,859,434 + MPMX19_01772 0.15 +0.1 1,859,434 + MPMX19_01772 0.15 -0.2 1,859,434 + MPMX19_01772 0.15 +1.1 1,859,434 + MPMX19_01772 0.15 +0.1 1,859,435 - MPMX19_01772 0.15 -1.1 1,859,435 - MPMX19_01772 0.15 -0.9 1,859,435 - MPMX19_01772 0.15 -0.1 1,859,435 - MPMX19_01772 0.15 -1.9 1,859,435 - MPMX19_01772 0.15 -1.6 1,859,435 - MPMX19_01772 0.15 -1.3 1,859,435 - MPMX19_01772 0.15 -2.0 1,859,485 + MPMX19_01772 0.20 -0.9 1,859,485 + MPMX19_01772 0.20 -0.4 1,859,485 + MPMX19_01772 0.20 -0.3 1,859,485 + MPMX19_01772 0.20 +0.7 1,859,485 + MPMX19_01772 0.20 +1.1 1,859,485 + MPMX19_01772 0.20 -1.6 1,859,486 - MPMX19_01772 0.20 -0.3 1,859,486 - MPMX19_01772 0.20 +0.7 1,859,486 - MPMX19_01772 0.20 +0.1 1,859,490 + MPMX19_01772 0.21 -0.9 1,859,490 + MPMX19_01772 0.21 -0.0 1,859,490 + MPMX19_01772 0.21 +0.9 1,859,490 + MPMX19_01772 0.21 +1.7 1,859,490 + MPMX19_01772 0.21 -0.3 1,859,490 + MPMX19_01772 0.21 -0.9 1,859,490 + MPMX19_01772 0.21 -0.4 1,859,490 + MPMX19_01772 0.21 -1.0 1,859,490 + MPMX19_01772 0.21 -0.9 1,859,490 + MPMX19_01772 0.21 -0.3 1,859,490 + MPMX19_01772 0.21 -1.2 1,859,490 + MPMX19_01772 0.21 +1.7 1,859,490 + MPMX19_01772 0.21 +0.4 1,859,491 - MPMX19_01772 0.21 -0.8 1,859,491 - MPMX19_01772 0.21 -0.3 1,859,491 - MPMX19_01772 0.21 -0.6 1,859,491 - MPMX19_01772 0.21 -0.5 1,859,689 + MPMX19_01772 0.42 -0.5 1,859,689 + MPMX19_01772 0.42 -0.9 1,859,689 + MPMX19_01772 0.42 +0.1 1,859,690 - MPMX19_01772 0.43 -0.9 1,859,936 + MPMX19_01772 0.69 -0.3 1,859,936 + MPMX19_01772 0.69 -0.8 1,860,118 + MPMX19_01772 0.89 -1.1 1,860,118 + MPMX19_01772 0.89 +2.1 1,860,118 + MPMX19_01772 0.89 -0.3 1,860,118 + MPMX19_01772 0.89 -1.1 1,860,119 - MPMX19_01772 0.89 -0.3 1,860,119 - MPMX19_01772 0.89 +0.3 1,860,119 - MPMX19_01772 0.89 +0.4 1,860,119 - MPMX19_01772 0.89 +0.4 1,860,119 - MPMX19_01772 0.89 -0.6 1,860,119 - MPMX19_01772 0.89 -0.8 1,860,119 - MPMX19_01772 0.89 +0.1 1,860,119 - MPMX19_01772 0.89 -1.3 1,860,119 - MPMX19_01772 0.89 -0.6 1,860,119 - MPMX19_01772 0.89 -0.3
Or see this region's nucleotide sequence