Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00878

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00876 and MPMX19_00877 are separated by 78 nucleotidesMPMX19_00877 and MPMX19_00878 are separated by 237 nucleotidesMPMX19_00878 and MPMX19_00879 are separated by 18 nucleotidesMPMX19_00879 and MPMX19_00880 are separated by 247 nucleotides MPMX19_00876: MPMX19_00876 - Transcription-repair-coupling factor, at 908,670 to 912,311 _00876 MPMX19_00877: MPMX19_00877 - hypothetical protein, at 912,390 to 912,713 _00877 MPMX19_00878: MPMX19_00878 - Guanidinium exporter, at 912,951 to 913,268 _00878 MPMX19_00879: MPMX19_00879 - hypothetical protein, at 913,287 to 913,826 _00879 MPMX19_00880: MPMX19_00880 - hypothetical protein, at 914,074 to 914,361 _00880 Position (kb) 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 912.082 kb on + strandat 912.082 kb on + strandat 912.083 kb on - strandat 912.199 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.412 kb on + strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.859 kb on + strandat 912.859 kb on + strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.944 kb on + strandat 912.944 kb on + strandat 912.945 kb on - strandat 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.015 kb on - strand, within MPMX19_00878at 913.015 kb on - strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.937 kb on + strandat 913.966 kb on + strandat 913.966 kb on + strandat 913.967 kb on - strandat 913.967 kb on - strandat 913.967 kb on - strandat 913.967 kb on - strandat 914.072 kb on + strandat 914.073 kb on - strandat 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.153 kb on + strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.154 kb on - strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.234 kb on + strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880at 914.235 kb on - strand, within MPMX19_00880

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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912,082 + -0.3
912,082 + -1.1
912,083 - -2.3
912,199 + +1.9
912,301 + +2.7
912,301 + -0.7
912,301 + -1.5
912,301 + -1.1
912,301 + -1.7
912,301 + -0.8
912,301 + -0.3
912,301 + +0.7
912,301 + -0.7
912,301 + -0.8
912,301 + -0.3
912,301 + -3.7
912,302 - -2.9
912,302 - -0.7
912,302 - -0.3
912,302 - -2.0
912,302 - -1.3
912,302 - -1.5
912,302 - +2.3
912,412 + -2.1
912,413 - -0.2
912,413 - -0.3
912,413 - -1.6
912,413 - -1.1
912,859 + +0.3
912,859 + -2.1
912,860 - -0.9
912,860 - -0.7
912,860 - -1.9
912,860 - -0.7
912,860 - -0.3
912,860 - -0.3
912,944 + +0.7
912,944 + +0.3
912,945 - -0.7
913,014 + MPMX19_00878 0.20 -0.9
913,014 + MPMX19_00878 0.20 +0.1
913,014 + MPMX19_00878 0.20 -1.7
913,014 + MPMX19_00878 0.20 -0.1
913,015 - MPMX19_00878 0.20 -1.0
913,015 - MPMX19_00878 0.20 -1.1
913,125 + MPMX19_00878 0.55 -0.5
913,125 + MPMX19_00878 0.55 -0.3
913,125 + MPMX19_00878 0.55 -1.0
913,126 - MPMX19_00878 0.55 +0.1
913,126 - MPMX19_00878 0.55 -2.4
913,126 - MPMX19_00878 0.55 -0.9
913,126 - MPMX19_00878 0.55 -0.3
913,126 - MPMX19_00878 0.55 +0.5
913,399 + MPMX19_00879 0.21 -1.1
913,399 + MPMX19_00879 0.21 -0.1
913,399 + MPMX19_00879 0.21 -2.1
913,399 + MPMX19_00879 0.21 -1.8
913,399 + MPMX19_00879 0.21 +0.3
913,399 + MPMX19_00879 0.21 -1.1
913,399 + MPMX19_00879 0.21 -0.5
913,399 + MPMX19_00879 0.21 -0.2
913,399 + MPMX19_00879 0.21 -1.9
913,399 + MPMX19_00879 0.21 +1.1
913,399 + MPMX19_00879 0.21 -0.3
913,399 + MPMX19_00879 0.21 +0.9
913,399 + MPMX19_00879 0.21 -0.7
913,399 + MPMX19_00879 0.21 -0.3
913,399 + MPMX19_00879 0.21 +0.3
913,399 + MPMX19_00879 0.21 -0.6
913,399 + MPMX19_00879 0.21 -2.0
913,400 - MPMX19_00879 0.21 -0.1
913,400 - MPMX19_00879 0.21 -0.3
913,400 - MPMX19_00879 0.21 -0.9
913,400 - MPMX19_00879 0.21 -2.3
913,400 - MPMX19_00879 0.21 +0.1
913,400 - MPMX19_00879 0.21 -0.9
913,400 - MPMX19_00879 0.21 +0.3
913,400 - MPMX19_00879 0.21 +0.1
913,400 - MPMX19_00879 0.21 -1.1
913,400 - MPMX19_00879 0.21 +0.1
913,400 - MPMX19_00879 0.21 -1.1
913,400 - MPMX19_00879 0.21 -1.3
913,937 + -1.5
913,966 + +0.7
913,966 + +0.1
913,967 - +0.9
913,967 - -0.1
913,967 - +0.1
913,967 - -0.9
914,072 + -0.7
914,073 - +0.7
914,153 + MPMX19_00880 0.27 -0.9
914,153 + MPMX19_00880 0.27 -1.2
914,153 + MPMX19_00880 0.27 +0.9
914,153 + MPMX19_00880 0.27 +0.7
914,153 + MPMX19_00880 0.27 -0.5
914,153 + MPMX19_00880 0.27 -2.3
914,153 + MPMX19_00880 0.27 +1.7
914,153 + MPMX19_00880 0.27 -0.9
914,153 + MPMX19_00880 0.27 -0.7
914,153 + MPMX19_00880 0.27 -0.8
914,153 + MPMX19_00880 0.27 -0.3
914,153 + MPMX19_00880 0.27 -1.3
914,154 - MPMX19_00880 0.28 -1.8
914,154 - MPMX19_00880 0.28 -0.3
914,154 - MPMX19_00880 0.28 -1.5
914,154 - MPMX19_00880 0.28 +0.1
914,154 - MPMX19_00880 0.28 -0.2
914,154 - MPMX19_00880 0.28 -0.7
914,154 - MPMX19_00880 0.28 -0.1
914,154 - MPMX19_00880 0.28 -0.7
914,154 - MPMX19_00880 0.28 -0.9
914,154 - MPMX19_00880 0.28 -0.9
914,154 - MPMX19_00880 0.28 +0.9
914,154 - MPMX19_00880 0.28 +0.9
914,154 - MPMX19_00880 0.28 +1.3
914,234 + MPMX19_00880 0.56 -1.1
914,234 + MPMX19_00880 0.56 +0.1
914,234 + MPMX19_00880 0.56 -0.7
914,234 + MPMX19_00880 0.56 +0.3
914,234 + MPMX19_00880 0.56 +1.1
914,234 + MPMX19_00880 0.56 -1.5
914,234 + MPMX19_00880 0.56 -1.0
914,234 + MPMX19_00880 0.56 -0.7
914,234 + MPMX19_00880 0.56 -0.3
914,234 + MPMX19_00880 0.56 -0.8
914,235 - MPMX19_00880 0.56 -0.5
914,235 - MPMX19_00880 0.56 -0.7
914,235 - MPMX19_00880 0.56 +1.7
914,235 - MPMX19_00880 0.56 -0.9
914,235 - MPMX19_00880 0.56 -1.8
914,235 - MPMX19_00880 0.56 +0.7
914,235 - MPMX19_00880 0.56 +1.5
914,235 - MPMX19_00880 0.56 +0.1
914,235 - MPMX19_00880 0.56 -0.9
914,235 - MPMX19_00880 0.56 +0.1
914,235 - MPMX19_00880 0.56 -1.7
914,235 - MPMX19_00880 0.56 -0.1

Or see this region's nucleotide sequence